>input_sequence_86537
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-------------------------------------------------------------ATGAGCTCTACTTTTAAAG
ATGCATTGAAGACAACCGATCCACTTCCCCTGCGAAAGGCTACTGCTCCTTCTGATATACTGGTTGCACTTCAGTTGATA
TCAAATTTGGCAGAAGTGGACATGTTGCGCTCTTATGGGAAGTTGATTCTTAATGAGCGTTTGTTTGAAGCTCTAATGCA
GTTTCCCATGAAGATGAGGAAGACTTGGCTGCCATTGTTGCCTTG-A---------------------------------
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------------------------------------------------------------
>chr3B_1_TraesCS3B01G572300
TAGGCAACATATGATGCATGATTTATTGCTACAAGAAGTTGACAATGATCTAGCAGATTTGGAACATGAGCATGTGGATG
AAGCTAACTTAATTAAGTCTGGTCAAGTCACAAATGAATGGACTAACTTTAAGAAACAATTATCGGAAGACATGTATGTT
GAATACCTTCTTAGGCATGGTGAACTAGAGAT------------------------------------------------
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----------------------------------GGAGTAACT----AGGTGATGATGGTCTCAT--TTT-GCGCAGTAC
CTATGTGATGTTGGTCTCATTTTGTGTAGTACCTGGGCGATGGTGGTCTCATTTTGTATAGTACCTAGGTTATGTTGGTC
GCTTGTTGATTTGTTTTTTGTGTGATAGCATAGTTGACAGTG--ATGGTGTGTTGTGTGTTCCTTTGTACATGGATCATC
TTGATATTAATATATATG--ATAGGTTGAAA-AAAACTTACTATGTGATGAACCATTTAT-TGATCAAGCATACTCTCTT
TGTGGGTGCAATTTTTC-----TT-TTCTTTGTAGCAACATGGCTGAAAGTATTGCACCAACTGCAAGGAGGAATTACGT
CGCAAGGTATAATGACATGGACATTGCATTTCTTGAGGTGCTTGTTCATAATCACAACATGGGTGACCATTAACAAAATG
GATGGAAAGCACATGTGTACATTGCAGCTATAAAGAATGTGAAGGAGAAGTGCAATAAGGATATATACATGTGTACAC--
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-----------------------------------------------------------------------TGCATTGTT
TTATTTGT-TTTTCCTTATATAAGA--ATATATATGGGGCAACAACTAT--ACTCTTCT-ATCTGTGTGTATGGTGCGGA
CAAATAAAGGAAAAGCGAAAGGGATACATTCTTACAAGACTAAAGTAGTGAAGCACTGACATTTCATATCTACCATATAT
TCAAAAGATCATA-CAACGGCGAAGGTGCCAAGATGGGTGCTGAGAATGGTGCATATCCAGAAGAACCAAGTGAAATCTC
TCCGGAAATGCCACCAAAGAGAGCCCGAACACGTGAGGCCATTATGTGCATGATTGGAGAAATGAGCTCTACTTTTAAAG
ATGCATTGAAGACAACCGATCCACTTCCCCTGCGAAAGGCTACTGCTCCTTCTGATATACTGGTTGCACTTCAGTTGATA
TCAAATTTGGCAGAAGTGGACATGTTGCGCTCTTATGGGAAGTTGATTCTTAATGAGCGTTTGTTTGAAGCTCTAATGCA
GTTTCCCATGAAGATGAGGAAGACTTGGCTGCCATTGTTGCCTTG-ATGTT-TGCAAATTATGCTTTCCTTTAAGTCTTG
TTGAATTTGAACCTATCTAGACTATTGTTTTCC--TACATTTGGAACCATGTCATGCTGAACTTGAACTTATCTGAAGTA
TTGTGTTGATAAATTTGGAACTATGC---CT------------------TGCTGTTGT---GAAATTGGAACACCTATTT
AAACTAT----------GTGTTGTACTTTGTTGGTGCAAGAAATTTGTTGTTGTTTTTGCA-TCA-------CTATTGCA
TGATGTTGTCGTCGATTTCTAGAATATTTGGATAGTATATATTTT-TTGCTATATGATCATCCAATTGTATTCACATATT
GTACAAATT----TTGTTTTGATGCACATATACTAATGTTGCTATGCAACTTCATGGTTTGCCATCCAAACATGATTCTG
TATTGAAACCTCA-TAAGATTCCATGAGCCAATTCAACAAACACCCAAAGAACCAAATTCGTATTCATGTCCATTACAGT
TTCCTGAGTGAATTGGAACTGAAACCAGTTCAACATAGAGGACTCCAATACAGACACCAAACG-TAGCGGATGAGAACTC
ATCATTAATTTCAGGGCATGGACTTCCAAATTTTGGAGAATTCAATTTGTTGAACTTGAAGTATT-TATCTCTTCTTTCT
TCGTACTCTTGCAGCACCGAAGCTTCAAGTTCCCAGGGCGTTCAAAATATTTGAGGCTGGCCATAGTGGTGGTATCTTAG
CTACTATCATGCACTTGGAAATAACAAACACACTTATGTGGCAGGGAATTAAAGAAGAGGGAGGGTTAGAGTAACATAGG
TAGACACCGTATCATATTAAATGATATGCTACTTTGTGTCATGCATGGCAATAAATAAGATCATTTACAATACTAGTCTA
TAATACTATGCACTATAAAAATACGTAATATCATAAATTAGTATTGTCATATGCATGATACTAGTATATGATACTCCCCC
ACTATGAGTAGTTCGATATACATGATACTACCTCCATCTAGGTGAATAAGTCATTCACGT
>chr3B_1
TAGGAAGCATATGATGGATGATTTATTGCTACAAGAAGTTGACAATGATCTAGCAGAGTTGGAACATGAGTATGTGGATG
AAGCTAACTTAATTAAGTCTATTCAAGTCACTAGTGGATGGACTAACATTAAGAAACAATTATCAGAAGACATGTATGTT
GAATACCTTCTTAGGCATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGAACGGAGGGGCCCCCACCGAGGGATGTGTGCTTAGGGCCAGCTACTGCATGGACTGAAAAAAC
GATGCTGCCATTCTGGCCCAAGTTACTGCGTATGAAGAAAGAGTTTGGCTAATAACACACATGAATATTAGCGATCGTGG
ATTGAGTAAACCTCACAATAGACAGATGCATCAGTTATAGGGTTGCTGGTTGCGGCTTCACGCATGCTTGAGGCAGGGCG
TGGCGGCGGCGGCGGCTCCCGCGGATGCTTTTTTACCTGTTCATCTCGCGGGTCAGGCTGCACTCTCTCGCTTGATCGAT
AATCGCCATCACCTCCTCGTCCATAGGCACCTCGACCGCGAGACTATCACCAAGCCGATAAACAGATTTTAGAGAAGAAG
GTACATATGCCCTAGCTATTTTGCGGGATCGTTGTTCCCATGCATAGCGATTGATAATCGATTGATTGGCCGTTGGTAGG
GATAGACGATATGATTAGGCTTTCTCATTTGTGAGTTCAGTGTGATGATTAGTATGATATTATCGAGTTGATTTAGCATC
TTGATAGCTTTGCTACCAGCCAATTTTTTTTATAGCTTTGCATTAATTCTCAAATTCAAGGGCACGTCCAACTGAGAGAC
CTTGATGCGATGCTTAGGGGAATACATAAATTCTAATAACAATTACATAGGATCTGTCAAAGAATCCCTGCTTGTTGTGC
TAATTGCAATTTATTGATGCTTTCCTATTAATAAATTGATTTGACTGCGTCCGTTTTTTGCAATGTTTTCTGGAACATAG
AGATGCAAGCACTCGTCGCCTAAAAGAAGACATTCCTTCATTTTCTTGTTAGATGGTTAATCTTTTTCTTCGAATGCATT
GGATCTGAATCATTTGATAGCTCTTCGAGTTCTGCCACCTCTTAGTAAATAATTTGTTGGGCACAAGATTGAATCCTCGG
ATCAAATTGAAAGTAGGGGGAAAACCACTAATTTTTTTGGGTCTTGATGACATACTCTAAGGGCCCCGAGCTCTAGTTTC
GCCCTGGGCCCCTAAAATCTCAGGACCGGCCCTGGGAGTAACT----AGGTGATGATGGTCTCAT--TTT-GTGTAGTGC
CTAGGTGATGGTGGTCTCATTTTGTGCAGTACCTGGGCGATGGTGGTCTCATTTTGTATAGTACCTAGGTTATGTTGGTC
GCTTGCTGATT-GTTTTTTGTGTGATAGCATA-TTGACAGTGATATGGTGCGTTCTGTGTTCCTTTGTACATGGATCATC
TTGATATTAATATATATG--ATAGGTTGCAA-GAAATTTACTATGCGATGAACCATTTAT-TGATCAAGCATACTATTTT
TGTGTGTGCAATTTTTC-----TT-TTCATTGTTGCAACATGGCTGAAGGTATTGCACCAAATGCAAGGAGGAATTACCT
CACATAGGATGATGACATGGACGTTGCATTTCTTGAGGTGCTTATTCATCATCACAACATGGGTGACCATTAACTAAATG
GATGGAAAGCACATGTGTACACTGCAGCTATAAAGAACTTGAAGGAGAAGTGTAATAATGATATATACATGTGTACAC--
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-----------------------------------------------------------------------TGCATTATT
TATCTGTT-TTTTCTTTATATAAGAATATATATATGGGGCAACAACTAT--ACTCTTCCTATGTGTGTGTATGGTGCGGG
CTAATAAAGCAAAAGAGAAAGGGATACATTCTTACAAGACTAAACTAGTGAAGGACTGGGATTCCATATCTACCATATAT
TCAAAAGATCATA-CAACGGTGAAGGTGCCAAGATGGGTGCTGAGAATGGTGCATATCCAGAAGAACCAATTGAAATCTC
TCCAGAAATGCCACCAAAGAGAGCACGAACACGTGAGACCATTATGTGCATGATTGGAGAAATGAG--------------
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------------------------------------------------------------
>chr1B_1
TAGGTAGCATATGATGGATGATTTATTGCTGCAAGAAGTTGACAATGATCTAGCAGATTCGGAACATGAGCGTATGAATG
AAGCTAACTTAATTACGTGTGTTGAAGTCACTAATGAATGGACCAACTTTAGGCAACAATTATCGAAATACATGTATGCT
AAATACTTTCTTAGGCATGCTGAACTGGAGAT------------------------------------------------
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----------------------------------GGAGTAACT----AGGTGGTGGTGGTCTCAT--TTT-GTGCAGTAC
CTAGGTGATAGTGGTCCCATTTTGTGCATTACCTAGGTAATGGTGGTCTCATTTTGTATAGTACCCAGGTGATGTTGGTC
ACTTGCTGATT-GTCTTTTGTGAGATAGCATAGCTGACCATG--ATGGTGCGTTGTGTGTTCCTTTGTATATG-------
--------------------ATAGGTTTGCTTAAAATTTACTATGTGATGAACCATTTGT-TGATCAAACATACTATTCT
TCTGTGTGC-ATTTTTC-----TT-T-TTTTGTAGCACCATGGCTGAAGGTACTGCACCACCTCCAAAGAGGAATTACGT
CACTTGGGATGATGACATGGACACTGCTATGCTTGAGGTGCTTGTTCATCATCACAACATGGGTGACCATTCACAAAATG
TATGGAAAGCACATGTGTACACTGCAGCTATAAAGAATGTGAAGGAGAAGTGTAATAAGGATATCGAAAAGGAAAACATC
TTGGGAAGGCTTAGGACTTTCGACAAGCAATTTGAAGTCATAAGCAAGATACTTTCTCAAAGTGGTTTTGGGTGGGATTG
GGTCAACCGTAAGCTATCCATTGATAGTGACGATGTCTAGACTAAATATGTGGAGGTAACTTCTATATATTTGCATTGTT
TTATTTGAGTTTTTCCTTATATAAG--A---ATATGGGGCAACAACTAT--TCTCTTCTTATGTGTGTTCATGGTGCAGG
TGAATAAAGCAAAAGAAAAGGGGACATGTTCTTACAAGGCCAAAGTAGTGAAGCACTGGGTTTCCATATCTACCATATAT
TCGAAAGATCATGCCAACATGAAAGGTGCCACGATGGGTGCTGAGAATGCTGCAGAGCCAGAAGCACCAATTGAAATCTC
TCAAAAAATGGTACCAAAGAGAGCACGAACAGGTGAGGCCATTATGTGCATGATTGGAGAGATGATGACTACTTTTAAAG
ACGCTTTGAAGACGGCTGATCCACTTCCATTGCCAAAGGCTACTACTCCTTCTGAAATACTTGCTGCACTTCAATTGATA
CCAGATTTGGCAGAAGTGGATATGTTGCGCTCTTATGGGAAGTTGATTCTTAATGAGTGTTTGTTTGAAGTTCTAATGGA
GCTGCCCATGCACATGAGGAAGACTTGGCTGCTATTGTTGCCTTG-AAGTTATGCAAATTATGCTTTCCTATTTGTCTGG
TTGAACTTGAACCTATCTAGACTATTATTTTGC--TACATTTGGGACCA-GTCGTGTTGAACTTCAACTTATCTGAACTA
TCGTGTTGTTTAATTTGGAACTATGT---GT------------------TGTTGT------GAATTTGGAATATCTAT--
------T----------GTGTTGTACTTTGTTGGTGCAAGAAATTTGTTGTTGTTGTTGCA-TCAATATTATATGATATA
TAATGTTGTCACCAATTTCTAGAATATTTGATAG-----TATTTT-TTGCTATATATCCATCCAATTGTATTCACACATT
GTACAACTT----TTTGTTTTATGTACATACT---ATGTTGCTATGCAATTCCATAGTTTGACATCCAAACAAGATTCCA
TATTGAAACCTCAGTAAAATTCCATGAGCCAATTCAACAAACACCTAAACAATTGAATTCATATTCATTGTC--------
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------------------------------------------------------------
>chr1A_1
TAGGCAACATATGATGGATGATTTATTGCTGCAAGAAGTCGACAATGATCTAGCAGATTCGGAACATGAGCCTATGGATG
AAGCTAACTTAATTACATGTGTTGAAGTCACTAATGAATGGACCAACTTTAGGCAACAATTATCGGAAGACGTGTATGCT
AAATACCTGCTTAGGCATGCTGAACTAGAGAT------------------------------------------------
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----------------------------------GGAGTAACT----AGGTGGTGGTGGTCTCAT--TTT-GTGCAGTAC
CTAGGTGATAGTGGTCTCATTTTGTGCATTACCTAGGTGATGGTGGTCTCAATTTGTATAGTACCTAGGTGATGTTGGTC
ACTTGCTGATT-GTCTTTTGTGAGATAGCATAGTTGACCATG--ATGGTGCGTTGTGTGTTCCTTTGTGCATGCATCATC
TTGATATTAATATATATG--ATAGGTTTGCTTGAAATTTACTATGTGATGAACCATTTAT-TGATCAAACATACTATTCT
TCTGTGTGC-ATTTTTC-----TT-TCTTTTGTAGCACCATGGCTAAAGGTACCGCACCACCTCCAAAGAGGAATTACGT
CACTTGGGATGATCACATGGACACTGTTATGCTTGAGGTGCTTGTTCATCACCACAACATGGGTGACCATTCACGAAATG
GATGGAAAGCACATGTGTACACTGCAGCTATAAAGAATGTGAAGGAGAAGTGTAATAAGGATAT----------------
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>chr7A_1
TAGGCAGCATGTGATGGATGATTTATTGCTACAAGAAGTTGATGCTGACCTAGCAAATTTGGAACATGAGCCCATGGACG
AAACTGACTTGATTACATCTATTCAAGTCACTAATGAATGGACCAACTTTAGGCAACAATTATCGCAAGACATGTATGCT
GAATACCTTCTCAAGCATGCTGAATTAGAGAT------------------------------------------------
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----------------------------------GGCGTAGTT----AGTTGATGGTGGATTAGT--TAG-TGGATGTTC
CTTGGTGGTGGTTGTCTCATTTTGTGTAGTGCCTGGGTGGTGGTTGTCTCATATTG-GTAGTGCCTAGGTGATGATGGTA
GCTTGCTGATT-GTCTTTTGTGTGATAGCTTGGCTGACCATG--ATGGTGCCTTGTGTGGTCTTTTGTACATGCATCATC
TTCATATTAATATATATGTGATGGATTTTCTCGAAATTTGCACTCTCATTCAACATTTATTTGGCCCGAAATACTTCTTT
CCTTTGTGC-AAAATTG-----TTATTCTTTGTAGCAGCATGGCTGAAGGAACTGAT---ACTGGAAAGAGGACTTATGT
CACATGGGATGATGAGATGGACACTGCCTTGCTTGAGGTACTTGTTCATCATCACAACATGGGTGACCATTCACAAAATG
GATGAAAATCACATGTGTACAGTGCAGCTATCAAGAATGTGAAGGAGAAGTGCAATAAGGATAT----------------
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>chr1D_4
---GCAGCATATGATGGATGATTAATTGCTGCAAGAAGTTGACAATGATCTAGCAGATTTGGAACATGAGCCTATGGATG
AAGCTAACTTAATTACGTGTGTTGAAGTCACTAATGAATGGACCAACTTTAGGCAACAATTATCAGAAGACATGTATGTT
GAATACCTTCTTAGGCATGCTGAACTAGAGAT------------------------------------------------
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----------------------------------GGAGTAACT----AGGTGGTGGTGGTCTCAT--TTTTTTGCAGTAC
CTAGGTGATAGTGGTCTCAT-TTGTGCATTACCTAGGTGATGGTGGTCTCATTTTGTATAGTACCTATATGATGTTGGTC
ACTTGATGATT-GTCTTTTGTGAGATAGCATAGCTGACCATG--ATGGTGCGTTGTGTGTTCCTTTGTACACGCATCATC
TTGATATTAATATATATG--ATAGGTTTGCTTGAAATTTACTATATGATGAACCATTTAT-TGATCAAACATACTATTCT
TCTGTGTGC-ATTTTTC-----TT-TCTTTTGTAGCACCATGGCTGAAGGTACTGCACCACCTCCAAAGAGGAATTACGT
CACTTAGGATGATGACATGGACACTGCTATGCTTGAGGTGCTTGTTCATCATCACAACATGGGTGACCATTCACAAAATG
GATGGAAAGCACATGCGTACACTGCAGCTATAAAGAATGTGAAGGAGAAGTGTAATAAGGATATCAGAAAGGAAAACATC
TTGGGAAGGCTTAGGACTTTCGACAAGCAATTTGAAGTCATAAGCAATATACTTTCTCAAAGTGATTTTGGGTGGGATTG
GGTCAACCATAAGCTATCCATTGATAGTGACGATGTCTGGACTAAATATGTGGAGGTAACTTCTATATATTTGCATCGTT
TTATTCGA-TTTTTCCTTATATAAG--A---ATATGGGGCGACAACTAT--TCTCTTCTTATGTGTGTTCATGGTGCATG
CAAATAAAGCAAAAGAGAAGGGGATAAGTTCTTACAAGACCAAAGTAGTGAAGCATTGGGATTCCATATCTGCCATATAT
TCGGAAGATTGTGCCAATGGGGAAGGTGCCATGACGGGTGCTGAGAATGCTGCAGACCCAGAAGAACCAATTGAAATCTC
TCCAGAAAATGGCACCAAGCGAGCACGAACAAGTGAGGCCATTATGTGCATGATTGGAGAAATGAGGACTACTTTTAAAG
ATGCTTTGAAGACAACCGATCCACTTCCATTGCGAAAGGCTACTACTCCTTCTGAAATACTTGCTGCACTTCGGTTGATA
CCAGATTTGGCAGAAGCGGATATGTTGCGCTCTTATGGGAAGTTGATTCTTAATGAGCGTTTGTTTGAAGCTCTAATGGA
GCTGCCAATGCACATGAGGAAGACTTGGCTGCTATTGTTGCCTTG-AAGTTATGCAAATTATGCTTTCCTATTTGTCTTG
TTGAACTTGAACCTATCTAGACTATTATTTCGC--TACATTTGGGACCATATCATGTTGAACTTCAACTTATCTGAACTA
TTGTGTTGTTTAATTTGGAACTATGT---GT------------------TCTTGT------GAATTTGGAATATCTAT--
------T----------ATGTTGTACTTTGTTGGTGCAAGAAATTTGTTGCTGTTGTTGCA-TCAATATTATATGACATA
T-ATGTTGTCATCAATTTCTAGAATATTTGATAG-----TATTTT-TTGCTATATATTCATCCAATTGTATTCACACATT
GTACAATTT----TTTTATG------TACATACTAATGTTGCTATGCAATTCCATAGTTTGACATCCAAACAAGATTCTG
TATTGAAACCTCAGTAAGATTCCATGAGCCAATTCAACAAACACCCAAACAACTGAATTCGTATTCATGTCCATTAG-GT
TTGCTGGCTGAATTGGAATTGAAACCAATTCAATACAGAGGTCTCCAATATGGACATCTAAAC-----------------
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------------------------------------------------------------
>chr2B_21
--------------------ATTTATTGCTTCAAGAAGTTGATGTTTCCCTAGCAAATTTGGAACATGAGCATGTGTATG
GCCCTGACTTGATACATT---TTCAAGTCACTAATGAATGGGCCAACTCTAGGCAACAAATATTGGAAAACATGTATGAT
AAATACCTTCTCAGGCATGTTGAACTAGAGAT------------------------------------------------
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----------------------------------GGCATAGTT----AGTTGATGGTGGAGTAGT--TAG-TGGATG---
----------GTGGAGT-AGTTTGTATGGTGGCTAGGTGGTGGTCGTCTCATTTAATGTAGTACCTAGGTGATGATGGTC
GCTTGCTAATT-GTCTTTTGTGA--TAGCTTAGCTGATGATG--ATGGTGCCTTGTGTGGTCTTCTGTACATGCATCATC
TTGATATTAATATATATG--ATAGCTTTTCTCAAAATTTGAACCCTCATGCACCATTT-T-GGATCCAACATACTTTTTT
CCTTTGTGC-ATTTTTC-----TT-T-----GTAGCAACATGGCTAATGAAACTGCT---CCTACAAGGAGGAATTACAT
CACAC-GGATGATGAGATGGACGATGCAATGCTTTAGGTACTTGTTCATCATCACAACGTGGGTGATCATTCGCAAAATG
GATGGAAAGCACATGTGTACATTGGAGCTATCAATAATGTGAAGGAGAAGTGTAATAAGGATAT----------------
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>chr4B_75
--------------------------------------------------------------------------TGGATG
AAGCTAACTTAATTATGTTTGTTGAAGTCTCTAATGAATGGACCAACTTTAGGCAACAATTATCGGAAGACATGTATGAT
GAATACCTTCTTAGACATGTTGAACTAGAGAT------------------------------------------------
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----------------------------------GGAGTAACT----AGGTGGTGGTGGTGGTCTCATTTTGTACAGTAC
CTATGTGATAGTGGTCTCATTTTGTGCATTACCTAGGTGATGGTGGTCTCATTTTGTATAGCACCTAGGTGATGTTGGTC
ACTTGTTGATT-GTATTTTGTGAGATAGCATAGCTGACCATG--ATGGTGCATTGTGTGTTCCTTTGTACATGCATCATC
TTGATATTAATATATATG--ATAGGTTTTCTCAAATTTTACTATGTGATAAACCATTTAT-TGATCAAACATAATATTCT
TTTATGTGC-ATTTTTCA-TTCTT-T-----ATAGCACTATGGCTGAAGGTACTGCACCACCTCCAAAGAGGAATTACGT
CACATGGGATGATGACATGGACGCTGCTTTGCTTGAGGTGCTTGTTCATCATTACAATATGGGTGGCCATTCGCAAAATG
GATGGAAAGCACATGTGTACACTGCAGCTATAAAGAATGTGAAGGAGAA-------------------------------
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------------------------------------------------------------
>chr2D_103
--------------------------------------------------------------------------------
----------------------TCAAGTTACTAATGAATGGACCAACTCTAGGCAACAATTATCAAAAAACATGTATGCT
GAATACCTTCTCAGGCATGCTGAACTAGAGAT------------------------------------------------
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----------------------------------GGCATAGTTAATTAGTTCATGGTGGAGTAGT--TAG-TGGATG---
----------GTGAACTCATTTTGTGTAGTGCCTTGGTGGTGATTTTCTCATTTTGTGTAGTACCTAGGTGATGATGCTC
GCTTGCTGATT-GTCCTT--TGTGATAGCTTAGCTGACGGTG--ATGGTGCCTTGTGTGGTCTTCTGTACATGCATCATC
TTGATATTAATATATATG--ATAGCTTTTCTCAAAATTTGCATTCTCATACACCATTTGTTTGAAGCAACATACTCTTTT
CCTTTGTGC-AAAATTGTTTTCTT-T-----GTAGCAACATGGTTGATGGAACTTCT---CCTGCAAGGAGGAATGACAT
CACATGGAATGATGTGACGGACGATGCAATGCTTGAGGTACTTGTTCATCATCAAACCATGGATGACCATTCACAAAATG
GATGGAAAGCACATGTGTACATTGCAACTATCAAGAATGTGAAGGAGAAGTGTAATAAGGATATCACAAAGGACAACATA
TTAGGAAGGCTTAGGACTTTCGACAAGCAATATGAAGTCATTAACAAGATCCTTTCTCAAAGCGGTTTTGGTTGGGATTG
GGTCAACCATAATCTATCCATTAATAGTGACAATGTGCGGACTAAATTTGCATAGG------------------------
----TTTT-TTTTTCATATGTAACG--A---AACATGG-CAACAACTTT--ACTCTTCTGTTGGGTGTT----GTGCAGG
CTAATAAG---AAATAGAAAGGTTTAGCTTCTTACAATACCAAAGTAGTGAAGCACTGGGAAGCCATATCTACCATATAT
TCAAAAGATCTTTTCAATGGTGAAGGTGCCAAGATAGGTGCTGAGACTATTGTAGATCTAGAAGAACCAATTGAAATCTC
TCTAGA--TGGTACCAAAGAGGTAACGAATATGTGATGCCATTATGTGCATGATTGGAGAAATGATGACTACTTTTAAGG
ATGCTTTGTAGACAATTGATCTACTTCCATTGCCAAAGGTTACTACTTT---TGAAATACTTGCCGCACTTGAGTTGATA
GCAGAGTTGGCAGAAGCAGACATGTTGCG-TCTTATAGGAAGTTGATTCTTAACGAGCGTTTGCTTGAAGCTCTAATCGA
GTTGCCCATGCACATGAGGAACGTCTGGTTGCTATTGTTGCCTTGAAAGTTATGAAATTTATGCTTTCCTGTTTAT-TGG
TTGAACTTGGTCCTATATGAACTATTTGTTG-TGTTACATCTGGAACTATGTAAACTTCAACTTCAACTTATTTGAACAA
TTGTGTTGTTGAATTTGGAACTATGT---CT------------------TGTTGTCGTCGAGAATTTGGAACACCTATTT
AAACTAT--------ATGTGTTGCACTTTGTTAATGTAAATAATTTTTGTTTGTTTTGTGA--CAATATTGTATGATGTT
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>chr3D_686
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----------------------------------------------------------ACATCTATACATTTGCATTGTT
TTAATTAT-TTTTTTATACGTAACA--A---AACAGGG-TAGCAACTTT--ACTTCTCTCATGGGTGT--ATTGTGCAGG
CTAATAAG---AAGGAGAAAGCATTAGCTTCTTACAAGACCAAAGTCGTGAAGCACTGGGAAGCCATCTCTACCATATAT
TCAAAAGATCATGCGGACGGTGAAGGTGCCAAGACAGGTGCTGAGACTGCTGCAGATCTAGAAGAAACAATTGAAGTCTC
TCCAGAAACGGTACCAAAGAGACAACAAACAGGTGATGCCATTATGTGCATGATTGGAGAAATGAGGACTACTTTGAAGG
ATGCTTTGAAGACAACTGATCCACTTCCATTGCCAAAGGTTACTACTCCTTCTGAAATACTTGCTGCACTTGAGTTGATA
CCGGAGTTGGCAGAAGTAGACATGTTGCACTCTTACGGAAAGTTGATTCTTAATGAGCGCTTGTTTGAAGCTCTAATGGA
GCTTCCCATGCACATGAGGAAGGCTTGGCTGCTATTATTGCCTTG-AAGTT-----------------------------
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>chr4B_698
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-----------------------------------------------------------------------TGCATTGTT
TTATTCGT-TTTTTCCTTATATAAG--A---ATATGGG-AAACAACTAT--ACTCTTCTTATGTGTGTTCAAGGTGCATG
CTAATAAAGCAAAAGAGAAAGGGATAGGTTAATACAAGACCAAAGTAGTGAAGCACTGAGATTCCATATCTACCATATAT
TCAAAAGATCATGCCAATGGGGAAGGTGCCGTGATGGGTGCTGAGAATGCTGCAGAG-CAGAAGAACCAATTGAAATCTC
TCCAGAAATGGCACCAAGGAGAGCACGAACAGGTGAGGCCATTATGTGCATGATTGGAGAAATGATGACTACTTTTAAAG
ATGCTTTGAAGATAACCTATCCACTTTCATTGCCAAAGGCTACTACTCCTTCTGAAATACTTGTCGCACTTCAGTTGATA
CCAGATTTGGCATAAGCTGACATGTTGCGCTCTTATGGGAAGTTGATTCTTAATGAGTGTTTGTTTGAAGCTCTAATGGA
GTTTCCCATGCAAATGAGGAAGACTTGGCTCCTATTGTTTCCTTG-AAGTTATGCAAATTATGCTTTCCTGTTTGTCTTG
TTCAACTTGAACTTATCTGGACTATTATTTTCC--TACATTTGGGACCATGTCATGTTGGATTTGAACTTATCTGACCTA
CTGTGTTGTTACATTTGGAACTATGT---CT------------------TGTTGT------GAATTTGGAATACCTAT--
------T----------GTGTTGTACTTTGTTGGTGCAAGAAATTTGTTGCTGTTGTTGCA-TCAATATTACATGATATA
TAATGTTGTTGTCGATTTCTAGAATATTTGATAG-----TATTTTTTTGCTATATAATTATCCAATTGTATTCACACATT
GTACAAATTGCGGTTTTATG------CACATACTAATGTTGCTATGCAATTCCATAGTTTGACATCCAAATAAGATTCTG
TATTGAAACCTGAGTAAGATTCTATGAACCAATTCAACAAACACCCAAACAGCCGAATTCATATTCATGTCTATTACAGT
TTCCTGGCTGAATTGGAATTGAAACCAATACAATACATAGGCCTCCAATACAAACATCCAAA------------------
--------------------------------------------------------------------------------
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>chr2B_698
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------TGCATTGTT
TTAATTGT-TTTTTTGTATGTAACA--A---AACAGGG-AAGTAACTTTACACTTCTCTGATTGGTGT--ATTGTGCAGG
CTAATAAG---AAAGTGAAAGCATTAGCTTCTTACAAGACCAAAGTAGTGAAGCACTGGGAAGCCATCTCTACCATATAT
TCAAAAGATCATGCAGACGGTGAAGGTGCTAACACTGCTACTGAGACTGCTGAAGATCTGGAAGAACCAATTGAAATCTC
TCCAGAAACGGTACCAAACAGACAACGAACAGGTGATGCCATTATGTGCATGATTGGAGAAATGAGGACTACTCTTAAGG
ACGCTTTGAAGACAGCTGATCCACTTCTATTGTCAAACGTTACTACTCCTTCTGAAATACTTGCTACACTTGAGTTGATA
ACAGAGTTGGCACAAGTAGACATGTTGCACTCTTACGGAAAGTTGATTCTTAATGAATGCTTGTTTGAAGCTCTAATGGA
GCTTCCCATGCACATGAGGAAGGCTTGACTGCTATTATTGCCTTG-AAGTTATAATAGTTATGACTCC---TGTGTATTA
TTAAACTTGGACCTATTTGAACTATTTGG-TTTGTTACATTTGGAACTATGTATTGTTCAACTTCTACTTATTTGAACAA
TTGTAATGTTACATTTGGAACTATGT---GC------------------CGTTGA------GAATTTGAGACATCCAC--
------TTAGACTATATGTGTTGTATTGTGTTGGTGTAAAATTATTTTTGATTATTTTTGTGTCA-------ATATTATA
TGATGTCATCCTTGATTTCTAGAATAATTGATGAT---AA----TTTTACTATATAATCATCCTATTATAGTCATACAAC
TAC-------TATTTTAATT------CATATAGTAATGTTGCTATGCAATTCCAGTGTTTGACATCCAAACATGATTCTA
TATTGAAACCTCAGGACGATTCCGTGAGCCAATTCGATATACATCCAAACAACCAAATCCCTATTCATGTCCATTACAGT
TTCCTGTTTGAATTGGAATTGAAACCAATACAATAAAGAGGCCCCCAATACAGACATCCAAAC-----------------
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>chrUn_698
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-----------------------------------------------------------------------TGCATTGTT
TTAATTAT-TTTTTTGTATGTAACA--A---AACAGGG-CAGCAACTCT--ACTTCTCTGATGGGTGT--ATTGTGCAGG
CTAATAAG---AAGGAGAAAGCATTAGCTTCTTACAAGACCAAAGTAGTGAAGCACTGGGAAGCCATCTCTACGATATAT
TCAAAAGATCATGCGGACGGTGAAGGTGCCAAGACAGGTGCTGAGACTGCTGCAGATCTAGAAGAAACAATTGAAGTCTC
TCCAGAAACGGTACCAAAGAGACAACGAACAGGTGATGCCATTATGTGCATGATTGGAGAAATGAGGACTACTTTCAAGG
ATGCTCTGAAGACAACTGATCCACTTCCATTGCCAAAGGTTACTACTCCTTCTGAAATACTTGCTGCACTTGAGTTGATA
CCAGAGTTGGCAGAAGTTGACATGTTGCGCTCTTACGGAAAGTTGATTCTTAATGAGCGCTTGTTTGAAGCTCTAATGGA
GCTTCCCATGCACATGAGGAAGGCTTGGTTGCTATTATTGCCTTG-AAGTTATGATAGTTATGATTCC---TGTGTCTTG
TT------------------------------------------------------------------------------
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>chr2B_706
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-------------------------------------------------------------------------------T
TTGTTTGT-TTTTTCCTATGTAACA--A---AACATGG-CAACAACTTT--ACTCTTCTGTTGGGCGTT----GTGCAGG
CTAATAAG---AAATATAAAGGTTTAGCTTCTTACAAGACCAAAGTAGTGAAGCACTGGGAAGCCATATCTACCATATAT
TCAAAAGATCTTACCAATGGTGAAGGTGCCAAGACAGGTGCTGAGACTGTTGTAGATCTAGAAGAACCAAATGAAATCTC
TCCAAA--TGGTACCAAAGAGGCAACGAACATGTAATGCCATTATGTGCATGATTGGAGAAATGAGGACTACTTTTAAGG
ATGTTTTGAGGACAACTGATCCAGTTCCATTGCCAAAGGCTACTA---CTTCTGAAATACTTGCCGTAGTTGAGTTGATA
CCAGAGTTGGCAGAAGCAGACATGTTACGCTCTTATAGGAAGTTGATTCTTAACGAGCGCTTGCCTGAAGCTCTAATCGA
GTTGCCCATGCACATGAGGACGGTTTGGTTGCTACTGTTGCCTTGAAAGTTATGCAAATTATGCTTTCCTGTTTGTCTGG
TTGA-CTTGGTCCCATGTGAACTATTTGTTTTTGTTACATTTGGAACTATGTAATGTTCAACTTCAACTTATTTAAACAA
TTGTGTTGTTAAATTTGGAACTATGTCTTGT------------------TTTCGT---CGAGAATTTGGAACACCTAT--
------TTAAAATATACGTGTTTCACTTTGTTGATGTAAAATAAGTTTGGTTTGTTTT-GTGACA-------ATATTATA
TGATGCCGTCCACCATTTCTAGAATATCTGATGAGAAGAA----ATTTACTATATAATCATCCAATTGTAGTCACACATT
ATACAACTTTTGTATTGATG------CATATATTAATGTTGCTATGCAATTCCATAGTTTGACATCCAAACATGAATCTA
TATTGACACCTCAGGATGATTCTACGAGCCAATTCAATAAACATGCAAACAATCAAATCCATATTCATGTCCATTACAGT
TTCCACGTTGAATGGGAATTGAAACCAATACAATACAGAGGCCTCCAATACAGACATCCAAACACAGCGTGATAGAA---
--------------------------------------------------------------------------------
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>chr5D_799
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------------------AAGGGATAGGTCCTTACAAGACCAAAGTAGTGAAGCACTGGGATTCCATATCTACAATATAT
TCAAAAGATCATGCCAATGGGGAAGGTGCTGTGATGGGTGCTGAGAATGCTGCAGAGCCAGAAGAACCAATTGAAATCTC
TCCAAAAATGGCACCAAAGAGAGCACGAACATGTGAGTCCATTATGTGCATGATTGGAGAAATGAGGACTACTTTTAAAG
ATGCTTTGAAGACAACCGATCCACTTCCGTTGCCAAAGGCTACTACTCCTTCTGAAATACTTGCCGCACTTCAGTTGATA
CCAGATTTGGCAGAAGCGGACATGTTGTGCTCTTATGGAAAGTTGATTCTTAATGAGCGCTTGTTTGAAGCTCTAATGGA
GCTGCCCATGCACATGAGGAAGACTTGGCTGCTATTGTTGCCTTG-AAGTTACACAAGTTATGCTTTCCTGTTTGTCTTG
TTGAACTTGAACCTATCTAGACTATTATTTTCC--TACATCTGGGACCATGTCATGTTGGACTTGAACTTATCTGAACTA
CTGCGTTGTTAAATTTGAAACTATGTCTTGTTGTGAATTTGGAACTATGTCTTGT---TGTGAATTTGGAATGCCTAT--
------T----------GTTCTGTACTTTGTTGGTGCAAGAGA-TTGTTGCTGTTGTTGCA-TCAATATTATATGATATA
TAATGTTGTTGTCAATTTCTAGAATATTTGATAG-----TATTTTT-GGCTATATATTCATCCAATTGTATTCACACATT
GTACAAATTTTGGTTTTATG------CACATACTATTGTTGCTATGCAATTCCATATTTTGACATCCAAACAAGATTCTG
TATTGAAACCTTAGTAAGATTCCATGAACCAATTCAACAAACACCCAAACAGCCGAATTCGTATTCATGTCCATTACAGT
TTCCTGACTGAATTGGAATTGAAACCAATTCAATACATAGGCCTCCAATACAGACATCCAAAC-----------------
--------------------------------------------------------------------------------
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------------------------------------------------------------
>chr2D_1114
--------------------------------------------------------------------------------
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--------------AGCGGACATATTGCGCTCTTATGGGAAGTTGATTCTTAATGAGCGTTTGTTTGAAGGTCTAATGGA
GCTGCCCAGCCACATGAGGAAGACTTGGCTGCTATTGTTGTCTTA-AAGTTATGCAAAT-----TTTCCTGTTTGTCTTG
TTGA-CTTGGACCTATCTAGACTATTGTTTTCC--TACATTTGGGACCATGTCATGTTGAGCTTGAACTTATCTGAACTA
TTGTGTTGTTAAATTTGGAACTATATCTTGT------------------TGTTGT------GAATTTGGAATACCTAT--
------T----------GTGTTGTACTTTGTTGGTGCAAGAAATTTTTTGTTGTTGTTGCA-TCAATATTATATAACATA
TAATGTTGTCATCGATTTCTAGAATATTTGATAG-----TA-TTTT-TGGTATATATTCATCCAATTGTATTCACACATT
GTACAAATTTTAGTTTTATG------CACATACTAATGTTGCTATGCAATTCCATAGTTTGACATCCAACCAAGATTATG
TATTGAAACCTCAGTAAGATTCCACGAGCCAATTCAACAAACACCCAAACACCCGAATTCGTTTTCATGTCCATTACAGT
TTC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr3B_1305
--------------------------------------------------------------------------------
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-------------------------------------------------TGTCTTGTTGAATTTGAACCTATCTAGACTA
TTGTTTCC-TACATTTGGAACTATGCCTTGC------------------TGTTGT------GAAATTGGAACACCTAT--
------TTAAAC--TAGGTGTTGTACTTTGTTGGTGCAAGATATTTGTTGTTGTTGTTGCA-TCA-------CTATTGCA
TGATGTTGTCGTCGATTTTTAGAATATTTTGATAGTATATATTTTT-TGCTATATGATCATCCAATTGTATTCACATATT
GTACAAATT----TTGTTTTGATGCACATATACTAATGTTCCTATGCAATTTCATGGTTTGCCATCCAAACATGATTCTG
TAATGAAACCTCAGTAAGATTCTATGAGCCAATTCAACAAACACCCAAACAACCAAATTCGTATTCATGCCCATTACATT
TTCCTGAGTGAATTGGAACTGAAACCAATTCAATATAGAGGACTCCAATACAGACATCCAAACATAGCGGATGAGAACTC
GTCATTAATTTCGGGGCATGGACTACCAAATTTTGGAGAATTTGATTTGTTGAACTTGAAGTATTTTATCCCTTCTTCCT
TTGTACTCTTGCAGCACCACAGCTTCAAGTTCCCAGGGGCGTTCAAATATTTGAGGCTGACCATAGTGGTGGTATCTTAG
CTACTATCATGCACTTGGAAATAGCAAACACGCTTATGTGGCAGAGAATTAAAGAAGAGAGAGGGTTAGAATAGCATAGG
TAGAT-CCGTATCATATTAAATGCTATGCTATTTTGTGTCATGCATTACAATAAATAAGATCATTTACAATACTAGTCTA
TACTACTATGCACTATAAAAATACGTAATATGATAAATTAGT--------------------------------------
------------------------------------------------------------
>SNPs
----------------S---------------------------------------------------------------
---------------------S---------S------------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------S-------
----------S---------------------------------------------------------------------
-----------S--------------------------------------S-----------------------------
----------------------------S-------S----------------------------------------S--
----S-------------------------------------------S-------------------------------
-S--S--S--S--------------------------------------S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S----------------S
---------S-----S-------------------------------------------S---S----------------
--------------------S-------------------------------------------------S---------
---S--------------------S-----------------------------------------SS------------
----S-----------------------SS--------------S----------S-----S------------------
S--S--------------------------------------------------------------------------S-
----------S-S-------------------S--------------S----------------------S-SS------
-----S--------------------------------------------------S--------------------S--
--------S------------------------------------------S---S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
-------------------------------------------------S------------------------------
---------------------------S-----S----------------------S-S--SS-----------------
S-----------S-----------S-----------------SS--------------------------S------S--
-S----------------SS------------------SSS-SS---------------S--------------------
-----------------------S-------S------------S--------------S----------S--S------
----SS-----------------S-------S--------------SS--------------------------------
--S----------------------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2240
--------------------------------------------------------------------------------
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------------------------------------------------------------ATCTGTGTGTATGGTGCGGA
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>reverse_3380
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------AAGCTTCAAGTTCCCAGGGC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
