>input_sequence_86528
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---------------------------------------------ATGTCGCTGCAGGATGGCGACGGCGGCACGCTAGA
CCTGCCGCATTTGGTGCAATCCGTGGTATGCGCGGAGTGGACGGCCGAGGTGATTGGCGTGGAGCTGGTGCGACCAGGCG
TCGCGCCGTGGCGGAGGGAAGGAGGAGAAGGAGAGATGTTAGGGACGGCCAGTGTGGTTGCTCCGGTGATGGCGTCCTGC
GGGGGGCTTAGAAGCAACGGCTGCCATTGA--------------------------------------------------
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>chr2A_1_TraesCS2A01G220500
GGGAGTTAGGAATTCCTTCGTCGGCTCGCTGGTCGGTCAGGAGTTGGATGAGAGTCATCATGTAATCGAGTTAGTTTTGT
TGGGTTCGATCCCTGTATCCACTATATTCTAAGTTTGATGTTGCTATGACTTTGCCATGCTTAATGCTTGTCACTTTGGG
CCTGGGTGCCATGATTTCAGATCTGAACCATTTATGTTATCACCATTATATCCATGTTCTAGATCCGATCTTGCAAGTTA
TAGTCACCTACTACGTGTTATGATCCGGCAACCCCGGAGTGACAATAGTCAGGACCACTTCCAGTGATGACTGTAGTTTG
AGGAGTTCATGTATTCACCGTGTGGTATTGCTTTGTTCTGATTCTCTATTAAAAGGAGGCCTTAACATCCCTTAGTTTCC
AATAGGACCCCGCTGCCACGGGAGGGTAGGATAAAAGATGTCATGCAAGTTCTTTCCATAAGCACATATCTTCCCCTATA
TATATATATATATATATATATATATAATAATAAAGCACCTAATGCTTCTGGTCGTCCGTCGTCAGCAATTTTGCAAAACA
GTCCCCTAGTTTCTGAGAAATTAACCGGCACTCCTACT-AAAATGTGCTACCGATGAATAACGTTTCAAAT----TTTTT
GCAAAAAACCCCCTGCCACCACCGCCACTAAAGCATTGCCTGCCTCCACCATCGGGCACGCGCCGCCGCTTGCCTCCGGT
GTCCACGATGCAGAAGCCAAGGAAGGGGGATGCGTCGCGGCGGGCATCCGCGCCGCCCGAGCCCAGGAGCCAGCCGTAGT
CGGTACCTTTTACTCTATCTATCTTCCCTGCCCTCGGCATCAATGGACCAATGCGGCGCTACTGGATGAGGCGGAGCGCA
GAGGGGAAGGGCCAGAGGTTGGTCGCCGTCCAGCAGAGCAGCACCACGCGCCTCAGATGGCAAGGGCGGCCGCCGTAGGT
TGAGTACGTACTGCGGGCACCGGCGGCTACCGCTTCCCGACGCACATGTCGCTGCAGGATGGCGACGGCGGCACGCTAGA
CCTGCCGCATTTGGTGCAATCCGTGGTATGCGCGGAGTGGACGGCCGAGGTGATTGGCGTGGAGCTGGTGCGACCAGGCG
TCGCGCCGTGGCGGAGGGAAGGAGGAGAAGGAGAGATGTTAGGGACGGCCAGTGTGGTTGCTCCGGTGATGGCGTCCTGC
GGGGGGCTTAGAAGCAACGGCTGCCATTGAGGGTGTGTGCTGCGTGGTAGACAGAGAGATGGGGAGAAAATATAGGAAGG
GAATCGGGAGGATGCGGAAGAAGAAGGCACGGGGGAGAGACGAGGATGAGAACGGGTGAGACGATAAGGTTGGAGGTTAG
TGGCGAGCGGCTGAGACGAGGACGTGGATACTGGAACATCGGTGCGTGGGGCCATGTGACAGGCGTCGCTCAAGACGGGT
TTGTCAACAGCTGGAGCTCTTTGTTTGCCACATTGCACTCACCCACGGAGGTCACTGCTGACCAGGCGAGGTATTTTTAC
TAACTGCACCAAAGTACTGGAAGCTTGTGAATTTGCTGTCCATGCTTAACCTGGTTCATGTTAATGT-GTAGG-------
TGGTGCTGACTCTCATACCTGCAATGATGGAGCCTTTGGTCAGTTTGCAACCGGAATTGGAAACGGTGATGCAGGTTTTG
TGATGGGAACTGGAAAGGGTCTTCTTAAGTTATGCAAGCATGTTAAATTACTTCCGGATAGAATTTGAAAGTG-GTCTTA
CCATGAAAACCGATGGGACATATCTTTCTCTGTCTGAGCAATCTTTGGTTCTGTATCTCAGT-------CAGGGTTTCTT
CATTTGTTTCTCACATTCTGTACATTATTATATCATATTG-------------------------------TACTAAACT
GCA---GTTTATTGCACAAATATGGAAACTTAAGATGTGCATTTGATAGTAACGCTCTATAAGTTCCTTTTTGTTTATAA
ATTATATGGTGTGCCATCCAAAAATACTCCATCCAATGTGCTGTATTGTGTTAAAAAATAGTTTGATTCTCGTCGTGCAT
GCATTTGATTGCTTCTCCGAATCTACATGCATATGCCGGTCTGGTATTACATTTTTCTTCTTTTTCTTGAAGATTTGCAT
CTGTTTGTGTTTTTGACTGACTACATAGGTCAAGACACACATGGTGGAAACATATATGCCTGGATGCCCAGTGAAATAAA
TACATAAATTATCTCTGGGCATTGCTGATTCCGGTTTATA
>chr6A_504
ATAATA--------------------------------------------------------------------------
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----------------------------AATAAAGCAAATTAGGTTTCTGGTCGTCCGTCATCGGCCTTTTTGCAAAAAA
GTCCCCCAGTTTCTGAGAAATTAATCCGCACTCCTACTTAAAGTATGCTACTGATGGATAACGTTTCGTTTTTTCTTTTT
GCAGAAAACCCCCTGCCACCACCGCCACTAATCCAGTGCCTGCCTCCACCGCCGGGCACGCGCCGCCACTTGCCTACGAC
GTTCACGCCACAGAAGCCAACGAA-GGGGATGCGTCGCGGCGGGCATCCGCGCCGCTCGAGCCTAGGAGCCAGCCGCAGC
CGGCTCCCTTTACTCTATCCATCTCCCCTGCCCTCGGCTTCAACGGACCAATGCGGCGCTGCTGAATGAGGTGGAGTGCA
GAGGGGAACGGCCAGAGGTTGGTCGCCGTCCAGCAGAGCAGCAGCACGCGCCTCGGATGGCAAGGACGACCGCCGTGGGT
TGAGGACGTATTGCGGGCGCCGGCGGCTACCGCTCCCTGACGCACATGTCGCTGCGGGATGGCGACGGCGGCACGCCGGA
CCTGCCGCGGTTGGTGCCGTCGGTTGTGTGCGAGGAGTGGACGGCCGAGGTGATTGGCATGGAGCTGGTGCG--------
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>chr6A_1457
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---------------------TGTTTGCCACATTGCGCTCGCCCAAGAAGGTCACTGCCGACCAGGCGAGGTATTTTTTC
TGCCTACATG-AAGTACTGGAAGCTTGAGGTTTTGCTGTACAGGTTTAACCTGGTTCCCCTTGATGTAATAGGTTCTCCT
TGGTACTGATTCTCATACCTGCAATGCTGGAGCCTTTGGTCAGTTTGCAACTGGAATTGGAAACACTGATGCAGGTTTTG
TGATGGGAACTGGAAAGGCTCTTCTCAAGGTGTGCAAGCATGTTAAATTACTTCCGGATGGAATTTGAAAA-TAGTCTTG
CCATGAGAACAGATGGGACATATCTTTCTCAGTCTGAGCAATCTTTGGTTCTGTATCTCAGTGATGTGTCAGGGTTTCTT
CATTTGTTTCTCACATTCTGTACATTATTCTATCATGTTTCTCATATTCTGTACATTATTCTATCATACTATACTAAACT
ACA---GTTTATTGCACAAATATGGAAACTTAAGATATGCATTTGATAGAAGTGA-CTATAAGTTCCTTTTTGTTTATAA
ATTATATGCTGGTCCATCCAAAAATACTC---------------------------------------------------
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>chr6D_1457
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---------------------TGTTTGCCACATTGCGCTCGCCCAAGAAGGTCACTGCCGACCGGGCGAGGTATTTGAG-
TGACTATACT-AATTATTCGAAGCTTGT-GTTTTGCTGTACAGGCTTAACCTGGTTCCTATTGATGT-ATAGGTTCTGCT
TGGCACTGATTCTCATACCTGCAATGCTGGAGCATTTGGTCAGTTTGCAACTGGAATCGGAAACACTGATGCAGGTTTTG
TGATGGGAACTGGAAAGGCTCTTCTCAAGGTATGCAAGCATGCTAAATTACTTCCGGGTCGAATTTGAAAA-TAGTCTTA
CCATGGAAACAGATGGGACATATCTTTCTCAGTCTGAGCAATCTTTGGTTCTGTATCTCAGTGATGTGTCAGGGTTTCTT
CATTTGTTTCTCACCTTCTGTACATTTTTATATTATATTG-------------------------------TACTAAACT
ACA---GTTTATTGCACGAATATGGAAAATTAAGATGTGCATTTGATAGAAGTAA-CTATAAGTTCCTTTCTGTTTATAA
ATTATATGCTGGACCATCAAAAAATACTCCATCCAATG------------------------------------------
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>chr6B_1457
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---------------------TGTTTGCCACATTGCGCTCGCCCAAGAAGGTCACTGCCGACCAGGCGAGGTATTTTTAC
TGACTACACC-AAGTACTGGAAGCTTGTGATTTTGCTGTACATGCTTAACCTGGTTCATGTTCATGT-GTAGGTTCTCCT
TGGTACTGATTCTCATACCTGCAATGCTGGAGCCTTTGGTCAGTTTGCAACTGGAATCGGGAACACTGATGCAGGTTTTG
TGATGGGAACGGGAAAGGCTCTTCTCAAGGTATGCAAGCATGTTAAATTACTTCCGGATAGAATTTGAAAAATAGTCTTA
CCATGAAAACAGATGGGACATATCTTTCTCAGTCTGAGCAATCTTTGGTTCTGTATCTCAGTTATGTGTCAGGGTTTCTT
CATTTGTTTGTCACATTCTGTACATTATTATATCATACTG-------------------------------TATTATACT
CCGTATGTTTATCGCGCAAATATGGAAACTTAAGATGTGCATTTGATAGAAGTAA-CTATAAGTTGCTTTTTGTTTATAT
ATTATATGTTGGACCATCCAAAAATACTCCATCCAATG------------------------------------------
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>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SS-S-S-S---------------S--S--SS----------S-
------S-----------------S-S---------------S-S------S----S----------SSS----------
---S---------------------------SS--S--------------SS---------------S-------S--SS
--S----SSS----------S---S-------------------------------S------S------------S--S
---SS--S-----------S----S-------------S----S----------------S---S------S----S---
--------S----------------------------------S----------S----------S--S-------S---
----S-----S-------S---------------S--S-----------------S--------------------SS--
--------SS-------SS--S--S--S----S-------------------------S-------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS---------------S---S----S-S----------S---------------------
-S---S----S-------------------S--------S----------------------S-----------------
----S----S----------------S------------------------S------------SS--------------
------------------S------S---S----------------------------------------SSS-------
----------S-------------------S-------------------------------------------------
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S------------------------------------------------S-SS-SS------------------------
--------S--SS-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_287
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---------------------------GCAACCCCGGAGTGACAATA---------------------------------
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>reverse_1346
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-----------------------------------------------------------------AAGGTTGGAGGTTAG
TGGCG---------------------------------------------------------------------------
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