>input_sequence_86508
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------------------------------------------------------ATGAGCAGATCCGGAGGCACCAACGG
TCCTGGGGAGTGGCCGTTTCTAGTGGGCGTCCCGGCGGCGAAGGCCATGAGGAAGATCCTCCACGACAGGCCGGACGTCA
CGGTGGAGGTTATCCCGGACGGCACCCCGGTGCCCGGAGAGTACAACCCCGACCGTGTCCGCGTCTTCTATGACTCGCAA
GAGCCCGACGCGCCCGTCGCCAAGATCCCCGTCATCGGCTAG--------------------------------------
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>chr6B_1_TraesCS6B01G090900
CCTGCAGGCATCGCCCCGTCGGAGCCGGATGAGCCGCCACCCAAACACCCACCACCACCCCAGACGATCCGAAGTGTACC
GCCCAACCTGCCGT-CCACCAGCCTGTGCCACCACGGTCACCGAACCAACTTCGCG-TCTCACTAAGGCCACCGACCACG
AGACCTGGAGGACGGGAGAGGAGACAATGGGCTTAGGGCAT-CCGCAACGCAACCGACGGGAGGGGACAGCCTCCACCGC
TGTCGCGGAGCCGACTGGACGCGACGACAGGGACCTACCAGACCCCTATTGGCCCAGCCGGACCCAAACAGGTCCGGACA
GCCCCTGT-CGCACACTGCGGCTCGCCGGCCGACGAAGCCACCACCGCCTCCTTTC-----------CACCACCATGAGG
GAGCAACACCGCAGCATGCCAACTCACCGGCCCACCCGAACCCAGATGGACCCCAAAAGGGCACAGACCTAGGCCACGCG
GGCGCCACCACGCCGCCCCGCGACTAACGGTCGCGCCGTCACATCAAAGGCACCCGAGGCCCGCGGAGTCCGCGCCACCA
AGCCACAACCCCCGTCGGCCGAGCAGCACCGCCGCCATCAGGAGGCCCTCGCGCCCCCTACA--CGCGCGGGAAAAAACC
GGCCTGCGCAGGGCCCGGCGGATCACGCCGGCGGCGATTGTAAGGAAGTATGGCGAGGAGGGGGCTGGAGGAGAGGTGGG
GATGGAGGGGGTTCGCCCGTCGCCCGC-----------------------------------------------------
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------------------------ATCATGCGCTTTTTCACCAGTCTCTCATGATTGTCGATGGCTCAATTTGTCCTACC
TAGGTAAAACGATGAACCCAATGATGGATTAACTAGCCCATGAACAAACAAGCAAAGTTCAGCTGACTAAACTAGGCAAG
CAAAGTCGATCGGGCGGCAAATCCAGCGACGCTTCACCACTGGGGTACGATATATAATTTTCACACAAGTACGTATGTGG
GTGAATATATTTTTCACACAAGTTACATCCATAGCCATAACTAAGCGGATCAAGATGAGCAGATCCGGAGGCACCAACGG
TCCTGGGGAGTGGCCGTTTCTAGTGGGCGTCCCGGCGGCGAAGGCCATGAGGAAGATCCTCCACGACAGGCCGGACGTCA
CGGTGGAGGTTATCCCGGACGGCACCCCGGTGCCCGGAGAGTACAACCCCGACCGTGTCCGCGTCTTCTATGACTCGCAA
GAGCCCGACGCGCCCGTCGCCAAGATCCCCGTCATCGGCTAGCTGGC----CCGGACCGATCACCAGTGCATGCTTTTCC
TCTTGAGAGCTCAATAAATAAAGCTAGCAGCGTGTTATACCTGCATAGCATAATCC---------------------GCC
AGCATTATTTCTTTTTCAAATGATAAGTGACATACGTGTGGCACGACGTAACACCGTCTGACGTTTTTTATACTAAAGTT
GTCATCCGAAAAGAAAATTGAACGTATCATCCAAACAAAAAGTTGCCATGCTTCACAACTAAACTTGTCATACTCTTGTA
ACTAAACTTGCCATAAAAAACATAAGGACAGAATTGCTTCGTGTCACACGTGTGACACTTATCAGGGACCATTTTTCCTT
GTTCACAAGGCACACCAGGCCTGCATAAAAAGAGACAGGTTCTCCAAT---GGCCATCAAAATGCAGTGGTAGAGGA--A
TCGACAAATCGAGTTGATCAAAGGGTGCCTACGGTTTGGCAGAGCCTGCGGCCAGTCATGCGTATGTAG-GTACGAGAGG
TCCTATTTTGGTGCCTTCTGCACTATAGATACGGAAGTGGCACTCATGCGCCTGATCTGATGGGCTGGCCCAGTGCGAGA
GTTTCTCACTCACTCGGTTTCACTGCTTGATCAGTCGACCGTTGACGAGTTGAATGTTGACTTTTGAAACAAATCATTGA
TATGAAAAAATCATAAAATTGAAAAAGTTCATGAATTGGAAAAAA-GGTTTGTGAATTTGAAAAAAGTTCGTAAATTTGA
AAAAGTTCACGACACTAAAAAAAGATGTGATTGACCGCCTGAAG------------------------------------
---GTAGCAAACCATGTGCTAGTCCTAAGCCTAATGGCAAGTAGCACATTACTCCGAACTTCACCATCCTCAACAAAGCA
TGCACCAAAAATCAAACACCTTCAAATGGATTGACGAGATAGTAGACTACATATATGGGTGCACGTACTTATG-TTCATG
GATGCCTACTGTGGGTATCAACAAGTTATCATGAATCACGAGGATGGGGGGAAATGTTCTTCACGGCCCCCTGT
>chr2D_44
AACAACCACT-------------------------------------------ACCACCCTGGACACTCCGTAGTGCACC
ACCCAACCTGCCGCCCCACCAGCCTGTGCCACCACGGTCACCGAACCAACATCGCCATCTCACTGGGGCCGCCAA-CACG
AGACCTGGAGGAAAGGAAAGGAGACAACAGCCACGGGAGCAACCACAACTCGAGCGGCAAGAGGGGACAGCCTCCACCGC
CCTCACGGAGCCGACCGGACGCGACGACAAGGACCTACCAGGCCCTGAC-GGCCCGGCCAGGCCCAAATGGGTCCAGACA
GTCCCTGCCCGCACATTGCAGCACGCCGGCCGACAAAGCCGCCACCGCCCGCAGATCGCCGTTGCCTCACCACCACCAGG
GAGCAACGCCGCCGCCGAAC----CACCGGCCCGCCCCAACCCAGATGGGGCCCAGAAGGGCCCAGATCTGGGCCGAGAA
GGG---------------CGCCGCCAACCACCGCGCCGCCGCGTCAAGGGAACCCGTGGCCCGCGGGATCGCCGCCGCCA
AGCCAC-ACCGCCGCCGGCCGAGCAGCACCGCCACCATCAGGGGGCCCCATGCCCTCCTACGCGTGCGCGGCTAAAAGCC
GGCCCGCCGCA---------------------------------------------------------------------
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>chr6B_470
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----CCACCACGCCGCCCCGCGACCAACGGTCGCGCCGTCACATCAAAGGCACCTGAGGCCCGCGGAATCCGTGCCACCG
AGCCAC-ACCCCCGACGGCCGAGCAGCACCGCCGCCATCAAGAGGCCCTTGCGCCCCCTACGCGCGCGCGGGAAAAAACC
GGCCTGCGCAGGGCCCGGCGGACCACGGCGGCGGTGACGGTAGGGAAGAATGGCGAGAAGGGGGCTGGAGGAGAGGTGGG
GATCGAGGGGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGGGGGAGGGTATCATGCGCTTTTTCACGAGTCTCTCGTGATTGTCGATGGCTCAATTTGTCCTACC
TAGGTAAAACGATGAACCCAATGATGGATTAACTAGCCCATGAACAAACAAGCAAAGTTCAGCTGACTAAACGAGGCAAC
CAAAGTTGATCGGGCGGCAAATCCAACGACGCTTCAGGGAGCGTATGTATATATAGG----------AGTACGTATGTGG
GTGAACGG------------------ATCCACAGCCATAACTGAGCGGATCAAGATGAGCAGATCCGGAGGCACCAACGG
TCCTGGGGAGTGGCCGTTTCTAGTGGGCGTCCCGGCGGTGACGGCCATGAGGAAGATCCGCCACGACAGGCCGGATGTCA
CGGTGGAGGTTATCCCGGACGGCACCCCGGTGCCCGGAGAGTACAACCCCGACCGTGTACGCGTCTTCTATGACTCGCAA
GAGCCCGACGCGCCCGTCGCCAAGATCCCCGTCATCGGCTAGCTGGC----CCGGACCGATCACCAGTGCATGCTTTTCC
TCTTGAGAGCTCAATAAATAAAGCTAGCAGCGTGTTATACCTGCATAGCATAATCC---------------------GCC
AGCATTATTT-TTTTTCAAATGATAAGTGACATACGTGTGGCACGAAGTAACACCGTCTGACATTTTTTACACTAAAGTT
GTCATCCGAAAAGAAAATTGAACGTATCATCCAAACAGAAAGTTGCCATGCTTCACAACTAAACTTGTCATACTCTTGTA
ACTAAACTTGCCATAAAAAACATAAGGACAGAATTGCTTCGTGCCACATGTGTGACACTTATCAGGGACCATTTTTCCTT
GTTCACAAGGCACACCAGGCCTGCATAAAAAGAGACAGGTTCTCCAGT---GGCCATCAAAATGCAGTGGTAGAGGA--A
TCGACAAATCGAGTTGATCAAAGGGTGCCTACGGTTTGGCGGAGCCTGCGGCCAGTCATGCGTATGTAG-GTAGGAGAGG
TCCTATTT-GGCGCCTTCTGCACTATAGATACGGAAGAGGCACTCATGTGCCTGATCTGATGGGCTGGCCCAGTGCGAGA
GTTTCTCACTCACTCGGTTTCACTGCTTGATCAGTCGACCGTTGACGAGTTGAACGTTGACTTTTGAAACAAATCATTGA
TATGAAAAAATCATAAAATTCAAAAAGTTCATGAATTGGAAAAAA-GGTTTGTGAATTTGAAAAAAGTTCGTAAATTTGA
AAAAGTTCACGGCACTAAAAAAAGATGTGATTGACCGCCTAAAG------------------------------------
---GTAGCAAACCATGTGCTAGTCCTAAGCCTAATGGCAAGTAGCACATTACTCCGACCTTCACCATCCTCAACAAAGCA
TGCACCAAAAATCAAACACCTTCAAATGGATTGACGAGATAATAGACTACATATATGGGTGCACGTACTTATA-TTCATT
GGTTCCTACTGTGGGTATCAACAAGTTATCATGAATCAAGAGGATGGGGGGAAATGTTCTTCAAGGCCCCCTGT
>chrUn_978
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-------------------------------TAGCCATAACTAAGCGGATCAAGATGAGCAGATCCGGAGGCACCAACGG
TCCTGGGGAGTGGCCGTTTCTGGTGGGCGTCCCGGCGGCGACGGCCATGAGGAAGATCCGCCACGACAGGCCGGACGTCA
CGGTGGAGGTTATCCCGGACGGCACCCCGGTGCCCGGCTAGTACGACCCCAAGCGCGTCCGCGTCTTCTACGACTCGCAA
GAGCCCGACGCGCCCGTCGCCAAGATCCCTGTCATCGGTTAGCTAGCTAGGCCGGACTGATCAACAGTGGATGCTATTCC
TCTTGAGAGCTCAATAAATAAAGCTGGCAGCGTGTTACACATGCATTGCAAATTGCATGATCCGTTTACTCGATCGAGCC
AGCATTGT------------------------------------------------------------------------
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-----------------------------------------------------------------------TTTTTCCTT
GTTCACAAGGCACACCAGGCCTGCATAAAAAGAGGCAGGTTCTGGCACACAGGCCATCAAAATGCAGTAGGTAGAGAGGA
TGGATAAATCGAGTCGATCAAACAGTGCCTACGGTTTCTCCTAGTCGCGCGCA--------------AG-GTAGGAGAGG
TCCTATTA-TGCGCCTTCTGCGCA--AGGTACCGAAGTTGCGCTCACGTGCATCCTCTGATGGGCTGGCCCAGTATGAGA
GCTTCTCACTCGCTCGGTTTCACGGTTTGATTGGTCGACCGTTGACCACCTGACCGTTGACTTTTGAAACAAATCATTGA
TCTTGAAAAA-CATAAATTTGAAAAGGTTCATAAAATGGAAAAAA-GGTTTGTGAATGTGAATTTTTTTCATAAATTTGA
AAAAGTTCATGAAATTGGAAAAAGATATGATTGACCGCCTGAAGGTGACCGTAATGATTCGGGATGTCAAACATCTCGAC
TGTGTAGCAAACCATGTGCTAGTCCTAAGCCTAATGGCAAGGAGCACATTACTCCGAACTTCACCAACCTCAACAAAGCA
TGTCCCAAAAATCAAACACCTTGACATGGATTAATGAGATAATAGACTACACATATGGGTGCACGTACTTATAATTCTTT
GACGCCTACTGTGGGTATCAATAGGTTATCATGAATCATGAGGATGGGGGGAAATGTTCTTCAAGGCCCCCT--
>chr6A_1163
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--------------------------------------------------------GTCCGCGTCTTCTACGACTCGCAA
GAGCCCGGCGCGCCCGTCGCCAAGATCCCTGTCATCGGCTAGCTAGCTAGGCCGGACTGATCAACAGTGCATGCTATTCC
TCTTGAGAGCTCAATAAATAAAGCTGGCAGCGTGTTACACATGCATTGCAAATTGCATGATCCGTGTACTCGATCGAGCC
AGCATTGT------------------------------------------------------------------------
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-----------------------------------------------------------------------TTTTTCCTT
GTTCACAAGGCACACCAGGCCTGCATAAACAGAGACAGGTTCTGGCACACAGGCCATCAAAATGCAGTAGGTAGAGA--A
TGGATAAATCTAGTCGATCAAACAGTGCCTACGGTTTCTCCTGGTCGTGCGCA--------------AATGTAGGAGAGG
TCCTATTA-TGCGCCTTCTGCGCA--AGGTACCGAAGTTGCGCTCATGTGCCAGCTCTGATGGGCTGGCCCAGTATGAGA
GCTTCTCACTCGCTCGGTTTCACGGTTTGATTGGTC---------------GACCGTTGACTTTTGAAACAAATCATTGA
TCTGAAAAAA-CATAAATTTGAAAAAGATCATAAAATGGAAAAAAAGGTTTGTGAATGTGAAAAAAAATCATAAATTTGA
AAAAGTTCATGAAATTGAAAAAAGATGTGATTGACCGCCTGAAGGTGACAGTAATGATTCGGGGTGTCAAACATCTCGAA
TGTGTAGCAAACCATGTGCTAGTCCTAAGCCTAATGGCAAGGAGCAGATTACTCCGAACTTCACCAACCTCAACAAAGCA
TGTCTAAAAAATCAAACACCTTGACATGGATTAACGAGATAATAGACTACACATATGGGTGCACGTACTTATAATTCTTT
GACGCCTATTGTGGGTATCAATAGGTTATCATGAATCACGAGGATGGGGGGAAATGTTCTTCAAGGCCCCCT--
>SNPs
SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------SS---SS----S----S---
S------------S------------------------------------S----S--------SS----S--S-S----
------------SS---S---------SS-S-SSS--SSSS---S----S-S-S--S-SS--------------------
SS--S----------S-------------S-----------S---SS-SS-----S---S-S------SS-----S----
-S-----S-------S---S--S-----------S-----S--------SS-SSSS-------------------SS---
-------S----S--SSSS-SSSS---------S---S-----------SS----S------S----S--S----SS-SS
--SS--------------------S------------------------------------------S------------
------S-------S----------------------------------S-----------S------------------
----------------------S----S------S--SS---S-----S--------S----------------------
---S----------SSSSSSSSSSSSS-----------------------------------------------------
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-----------------------------------------S--------S-----------------------------
------------------------------------------------------------------------S------S
------S------------------S----------SSSSSS-SS-SSSSSSSSSSSSSSSSSSSSS-------------
-----SSSSSSSSSSSSSSSSSSSSS------------------------------------------------------
-----------------------------------------S-----------------S--------------------
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----------S-----------------------------------S---------------S-------S---------
-------------------------------------S------------------------------------------
-------------------------------------------S----S-------------------------------
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----------------------------------------S--------------------------------S------
--------S--S------------------------------------S-------------------------------
------------------------------------------------------S-------------------------
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-----------------------------------------S------------------------------S------S
---------------------------------------------------------------S----------
>forward_156
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--------------------------------------------------------GTCTCACTAAGGCCACCGAC----
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>reverse_1727
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----------------------------------------------CGTAACACCGTCTGACGTTT--------------
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