>input_sequence_86507
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-------------ATGAGCAGATCCGGAGGCACCAACGGTCCTGGGGAGTGGCCGTTTCTAGTGGGCGTCCCGGCGGTGA
CGGCCATGAGGAAGATCCGCCACGACAGGCCGGATGTCACGGTGGAGGTTATCCCGGACGGCACCCCGGTGCCCGGAGAG
TACAACCCCGACCGTGTACGCGTCTTCTATGACTCGCAAGAGCCCGACGCGCCCGTCGCCAAGATCCCCGTCATCGGCTA
G-------------------------------------------------------------------------------
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-----------------------------------
>chr6B_1_TraesCS6B01G090700
TGATTTCTCCCGACCCAAACACCCACCACCACCCCGGACAATCC-AAGTGTACCGCCCAACCTGCCGCCCACCAGCCTGT
GCCACCACGATCACCGAACCAACTTCGCGTCTCACTGAGGCCACCGAC-ACGAGACCTGGAGGACGGGAGAGGAGACAAT
GGGCTTAGGGCATCCGCAACA-----------------------------------------------------------
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-------------------------------------------CCACCACGCCGCCCCGCGACCAACGGTCGCGCCGTCA
CATCAAAGGCACCTGAGGCCCGCGGAATCCGTGCCACCGAGCCAC-ACCCCCGACGGCCGAGCAGCACCGCCGCCATCAA
GAGGCCCTTGCGCCCCCTACGCGCGCGCGGGAAAAAACCGGCCTGCGCAGGGCCCGGCGGACCACGGCGGCGGTGACGGT
AGGGAAGAATGGCGAGAAGGGGGCTGGAGGAGAGGTGGGGATCGAGGGGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGAGGGTATCATGCGCTTTTTCAC
GAGTCTCTCGTGATTGTCGATGGCTCAATTTGTCCTACCTAGGTAAAACGATGAACCCAATGATGGATTAACTAGCCCAT
GAACAAACAAGCAAAGTTCAGCTGACTAAACGAGGCAACCAAAGTTGATCGGGCGGCAAATCCAACGACGCTTCAGGGAG
CGTATGTATATATAGG----------AGTACGTATGTGGGTGAACGG------------------ATCCACAGCCATAAC
TGAGCGGATCAAGATGAGCAGATCCGGAGGCACCAACGGTCCTGGGGAGTGGCCGTTTCTAGTGGGCGTCCCGGCGGTGA
CGGCCATGAGGAAGATCCGCCACGACAGGCCGGATGTCACGGTGGAGGTTATCCCGGACGGCACCCCGGTGCCCGGAGAG
TACAACCCCGACCGTGTACGCGTCTTCTATGACTCGCAAGAGCCCGACGCGCCCGTCGCCAAGATCCCCGTCATCGGCTA
GCTGGC----CCGGACCGATCACCAGTGCATGCTTTTCCTCTTGAGAGCTCAATAAATAAAGCTAGCAGCGTGTTATACC
TGCATAGCATAATCC---------------------GCCAGCATTATTT-TTTTTCAAATGATAAGTGACATACGTGTGG
CACGAAGTAACACCGTCTGACATTTTTTACACTAAAGTTGTCATCCGAAAAGAAAATTGAACGTATCATCCAAACAGAAA
GTTGCCATGCTTCACAACTAAACTTGTCATACTCTTGTAACTAAACTTGCCATAAAAAACATAAGGACAGAATTGCTTCG
TGCCACATGTGTGACACTTATCAGGGACCATTTTTCCTTGTTCACAAGGCACACCAGGCCTGCATAAAAAGAGACAGGTT
CTCCAGT---GGCCATCAAAATGCAGTGGTAGAGGA--ATCGACAAATCGAGTTGATCAAAGGGTGCCTACGGTTTGGCG
GAGCCTGCGGCCAGTCATGCGTATGTAG-GTAGGAGAGGTCCTATTT-GGCGCCTTCTGCACTATAGATACGGAAGAGGC
ACTCATGTGCCTGATCTGATGGGCTGGCCCAGTGCGAGAGTTTCTCACTCACTCGGTTTCACTGCTTGATCAGTCGACCG
TTGACGAGTTGAACGTTGACTTTTGAAACAAATCATTGATATGAAAAAATCATAAAATTCAAAAAGTTCATGAATTGGAA
AAAA-GGTTTGTGAATTTGAAAAAAGTTCGTAAATTTGAAAAAGTTCACGGCACTAAAAAAAGATGTGATTGACCGCCTA
AAG---------------------------------------GTAGCAAACCATGTGCTAGTCCTAAGCCTAATGGCAAG
TAGCACATTACTCCGACCTTCACCATCCTCAACAAAGCATGCACCAAAAATCAAACACCTTCAAATGGATTGACGAGATA
ATAGACTACATATATGGGTGCACGTACTTATA-TTCATTGGTTCCTACTGTGGGTATCAACAAGTTATCATGAATCAAGA
GGATGGGGGGAAATGTTCTTCAAGGCCCCCTGTAG
>chr6B_13
------------ACCCAAACACCCACCACCACCCCAGACGATCCGAAGTGTACCGCCCAACCTGCCGTCCACCAGCCTGT
GCCACCACGGTCACCGAACCAACTTCGCGTCTCACTAAGGCCACCGACCACGAGACCTGGAGGACGGGAGAGGAGACAAT
GGGCTTAGGGCATCCGCAACGCAACCGACGGGAGGGGACAGCCTCCACCGCTGTCGCGGAGCCGACTGGACGCGACGACA
GGGACCTACCAGACCCCTATTGGCCCAGCCGGACCCAAACAGGTCCGGACAGCCCCTGTCGCACACTGCGGCTCGCCGGC
CGACGAAGCCACCACCGCCTCCTTTCCACCACCATGAGGGAGCAACACCGCAGCATGCCAACTCACCGGCCCACCCGAAC
CCAGATGGACCCCAAAAGGGCACAGACCTAGGCCACGCGGGCGCCACCACGCCGCCCCGCGACTAACGGTCGCGCCGTCA
CATCAAAGGCACCCGAGGCCCGCGGAGTCCGCGCCACCAAGCCACAACCCCCGTCGGCCGAGCAGCACCGCCGCCATCAG
GAGGCCCTCGCGCCCCCTACA--CGCGCGGGAAAAAACCGGCCTGCGCAGGGCCCGGCGGATCACGCCGGCGGCGATTGT
AAGGAAGTATGGCGAGGAGGGGGCTGGAGGAGAGGTGGGGATGGAGGGGGTTCGCCCGTCGCCCGC--------------
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---------------------------------------------------------------ATCATGCGCTTTTTCAC
CAGTCTCTCATGATTGTCGATGGCTCAATTTGTCCTACCTAGGTAAAACGATGAACCCAATGATGGATTAACTAGCCCAT
GAACAAACAAGCAAAGTTCAGCTGACTAAACTAGGCAAGCAAAGTCGATCGGGCGGCAAATCCAGCGACGCTTCACCACT
GGGGTACGATATATAATTTTCACACAAGTACGTATGTGGGTGAATATATTTTTCACACAAGTTACATCCATAGCCATAAC
TAAGCGGATCAAGATGAGCAGATCCGGAGGCACCAACGGTCCTGGGGAGTGGCCGTTTCTAGTGGGCGTCCCGGCGGCGA
AGGCCATGAGGAAGATCCTCCACGACAGGCCGGACGTCACGGTGGAGGTTATCCCGGACGGCACCCCGGTGCCCGGAGAG
TACAACCCCGACCGTGTCCGCGTCTTCTATGACTCGCAAGAGCCCGACGCGCCCGTCGCCAAGATCCCCGTCATCGGCTA
GCTGGC----CCGGACCGATCACCAGTGCATGCTTTTCCTCTTGAGAGCTCAATAAATAAAGCTAGCAGCGTGTTATACC
TGCATAGCATAATCC---------------------GCCAGCATTATTTCTTTTTCAAATGATAAGTGACATACGTGTGG
CACGACGTAACACCGTCTGACGTTTTTTATACTAAAGTTGTCATCCGAAAAGAAAATTGAACGTATCATCCAAACAAAAA
GTTGCCATGCTTCACAACTAAACTTGTCATACTCTTGTAACTAAACTTGCCATAAAAAACATAAGGACAGAATTGCTTCG
TGTCACACGTGTGACACTTATCAGGGACCATTTTTCCTTGTTCACAAGGCACACCAGGCCTGCATAAAAAGAGACAGGTT
CTCCAAT---GGCCATCAAAATGCAGTGGTAGAGGA--ATCGACAAATCGAGTTGATCAAAGGGTGCCTACGGTTTGGCA
GAGCCTGCGGCCAGTCATGCGTATGTAG-GTACGAGAGGTCCTATTTTGGTGCCTTCTGCACTATAGATACGGAAGTGGC
ACTCATGCGCCTGATCTGATGGGCTGGCCCAGTGCGAGAGTTTCTCACTCACTCGGTTTCACTGCTTGATCAGTCGACCG
TTGACGAGTTGAATGTTGACTTTTGAAACAAATCATTGATATGAAAAAATCATAAAATTGAAAAAGTTCATGAATTGGAA
AAAA-GGTTTGTGAATTTGAAAAAAGTTCGTAAATTTGAAAAAGTTCACGACACTAAAAAAAGATGTGATTGACCGCCTG
AAG---------------------------------------GTAGCAAACCATGTGCTAGTCCTAAGCCTAATGGCAAG
TAGCACATTACTCCGAACTTCACCATCCTCAACAAAGCATGCACCAAAAATCAAACACCTTCAAATGGATTGACGAGATA
GTAGACTACATATATGGGTGCACGTACTTATG-TTCATGGATGCCTACTGTGGGTATCAACAAGTTATCATGAATCACGA
GGATGGGGGGAAATGTTCTTCACGGCCCCCTGTAG
>chrUn_979
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-----------------------------------------------------------------------AGCCATAAC
TAAGCGGATCAAGATGAGCAGATCCGGAGGCACCAACGGTCCTGGGGAGTGGCCGTTTCTGGTGGGCGTCCCGGCGGCGA
CGGCCATGAGGAAGATCCGCCACGACAGGCCGGACGTCACGGTGGAGGTTATCCCGGACGGCACCCCGGTGCCCGGCTAG
TACGACCCCAAGCGCGTCCGCGTCTTCTACGACTCGCAAGAGCCCGACGCGCCCGTCGCCAAGATCCCTGTCATCGGTTA
GCTAGCTAGGCCGGACTGATCAACAGTGGATGCTATTCCTCTTGAGAGCTCAATAAATAAAGCTGGCAGCGTGTTACACA
TGCATTGCAAATTGCATGATCCGTTTACTCGATCGAGCCAGCATTGT---------------------------------
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------------------------------TTTTTCCTTGTTCACAAGGCACACCAGGCCTGCATAAAAAGAGGCAGGTT
CTGGCACACAGGCCATCAAAATGCAGTAGGTAGAGAGGATGGATAAATCGAGTCGATCAAACAGTGCCTACGGTTTCTCC
TAGTCGCGCGCA--------------AG-GTAGGAGAGGTCCTATTA-TGCGCCTTCTGCGCA--AGGTACCGAAGTTGC
GCTCACGTGCATCCTCTGATGGGCTGGCCCAGTATGAGAGCTTCTCACTCGCTCGGTTTCACGGTTTGATTGGTCGACCG
TTGACCACCTGACCGTTGACTTTTGAAACAAATCATTGATCTTGAAAAA-CATAAATTTGAAAAGGTTCATAAAATGGAA
AAAA-GGTTTGTGAATGTGAATTTTTTTCATAAATTTGAAAAAGTTCATGAAATTGGAAAAAGATATGATTGACCGCCTG
AAGGTGACCGTAATGATTCGGGATGTCAAACATCTCGACTGTGTAGCAAACCATGTGCTAGTCCTAAGCCTAATGGCAAG
GAGCACATTACTCCGAACTTCACCAACCTCAACAAAGCATGTCCCAAAAATCAAACACCTTGACATGGATTAATGAGATA
ATAGACTACACATATGGGTGCACGTACTTATAATTCTTTGACGCCTACTGTGGGTATCAATAGGTTATCATGAATCATGA
GGATGGGGGGAAATGTTCTTCAAGGCCCCCTATAG
>chr6A_1166
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------------------CGCGTCTTCTACGACTCGCAAGAGCCCGGCGCGCCCGTCGCCAAGATCCCTGTCATCGGCTA
GCTAGCTAGGCCGGACTGATCAACAGTGCATGCTATTCCTCTTGAGAGCTCAATAAATAAAGCTGGCAGCGTGTTACACA
TGCATTGCAAATTGCATGATCCGTGTACTCGATCGAGCCAGCATTGT---------------------------------
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------------------------------TTTTTCCTTGTTCACAAGGCACACCAGGCCTGCATAAACAGAGACAGGTT
CTGGCACACAGGCCATCAAAATGCAGTAGGTAGAGA--ATGGATAAATCTAGTCGATCAAACAGTGCCTACGGTTTCTCC
TGGTCGTGCGCA--------------AATGTAGGAGAGGTCCTATTA-TGCGCCTTCTGCGCA--AGGTACCGAAGTTGC
GCTCATGTGCCAGCTCTGATGGGCTGGCCCAGTATGAGAGCTTCTCACTCGCTCGGTTTCACGGTTTGATTGGTC-----
----------GACCGTTGACTTTTGAAACAAATCATTGATCTGAAAAAA-CATAAATTTGAAAAAGATCATAAAATGGAA
AAAAAGGTTTGTGAATGTGAAAAAAAATCATAAATTTGAAAAAGTTCATGAAATTGAAAAAAGATGTGATTGACCGCCTG
AAGGTGACAGTAATGATTCGGGGTGTCAAACATCTCGAATGTGTAGCAAACCATGTGCTAGTCCTAAGCCTAATGGCAAG
GAGCAGATTACTCCGAACTTCACCAACCTCAACAAAGCATGTCTAAAAAATCAAACACCTTGACATGGATTAACGAGATA
ATAGACTACACATATGGGTGCACGTACTTATAATTCTTTGACGCCTATTGTGGGTATCAATAGGTTATCATGAATCACGA
GGATGGGGGGAAATGTTCTTCAAGGCCCCCTATAG
>SNPs
SSSSSSSSSSSS-----------------------S---S---------------------------S------------
---------S--------------------------S-------------------------------------------
--------------------S-----------------------------------------------------------
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---------------------------------------------------------------S----------------
-------------S------------S----S------S--------------S-------------------------S
--------S-----------SSS--------------------------------------S----S------S--SS--
-S-----S--------S-------------------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
S--------S----------------------------------------------------------------------
-------------------------------S------S------S------------------S----------SSSSS
S-SS-SSSSSSSSSSS----------------------------SSS-----------------------S---------
-S---------------------------------------------------------------------------S--
----------------------------------S---------------------------------------------
-----------------S--------------------------------------------------------------
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-----S---------------S-------S----------------------------------------------S---
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--S----S------------------------------------------------------------------------
-----S-------------------------------------------------------------------------S
----------------------------------------------------------------------------S---
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-----------------------------------------------------------S--------------------
--------------------------------------------------S----------------------------S
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----------------S---------------------------------------------------------------
----------------------------------------S-S----------------------------------S--
-----------------------------------
>forward_117
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-----------------ACCAACTTCGCGTCTCACTG-------------------------------------------
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>reverse_1358
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-----------------------------------------------------------------------------TGA
CGGCCATGAGGAAGATC---------------------------------------------------------------
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>forward_494
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--------------------------------------------------------------------------CCGTCA
CATCAAAGGCACCT------------------------------------------------------------------
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>reverse_1395
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----------------------------------TGTCACGGTGGAGGTTATCC--------------------------
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>forward_1198
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----------------------------------------------------------AATCCAACGACGCTTCAGGG--
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>reverse_2417
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----------------CCTTCACCATCCTCAACAAAGC------------------------------------------
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-----------------------------------
