>input_sequence_86506
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-----------------------------------------------------------------------ATGGAGCGG
GCGAACACGGAGCTGTACCTGGAGAACCTGCGCATCATGCAGGCGAACGAGCGGCTCCGGAGGACAGCGCAGCTGCTGGA
CCAGGAGAACAAGCAGCTCCTCGCCGATGTCAAGCGCAAGCAGCAGCACATGGCGGCCTCCTCCAAGGCGGCGGC-----
-GGCGAAGGGCGGCGGACCGTCCG---------------------GCGCGGCGCCGTCCAAGTCCGGCAAGCAGCAGCCC
CAGTGA--------------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G371500
CGGCGCGCCTGACGACGTTTGCGAACAAGGACGTCACGCCGGCCTGGCCCTGGATCAGTCCAAGACCACTTTCATCTGTT
TAGACTAAATTTTGTCAGAATTTGTGTTTGAAACATTTGAAATGGCCAGACATCTCGTGACTACGGTTGGATGGTTGGCG
CCCCGTCCGCTGTCCACGAACTCATTTAGTGTCATCGAATCATTTAGTGTCATCCATTCGGTGATCAGTGTTGGAGTTGC
CCTTTCTCATTTTCCCCAAGGATAATGCTAGTACTCCAAGGAAATCTTACCAATTCGTGGAGAATGCATGCACCTGGTTT
ACGAATTCTTTGGTGCACTGTGTAAGCTCCAAGTTTGACCGTTTGTGAA-----GGGA-GAGAGAC--TGGGATGAA---
-----------TGCG-------TTGGAAATGCTGTCAGCCGGGAGAAGCGCGCGGCACGGCCGAGAATAAGAATGATTGC
GTATCTTTGGACGGAG---AACCAGAAGTGCGTCATCAATTCATCACCATCATCACACTTTCTCATTGACAGCTAACCAC
AACCATGAATGTACACTGTACACATCCTTG------AGAGCCCTAGGCAG--CTCGGCCTGCATTCAAGCTGTGCAGGAG
AACACTGGAGTAGTAACTGGAGTA---------------------CACATTGCGATCCACTGCTGCTTTGCT-CGGGCGG
GCCTATAAATTCGCACCCTCGCCTGTGCTCTCCCCGCACC----ACAAGTTCTTCCTCACTCGAGCTATAGCTAGCTAGC
CTTCTTCTTCCTC--TCTGCTACCAGTGCCATTGTCTGTCCGTGCCTTCC-----AGGCCCAAGTACTGCCATTTCAC--
-----------GG--TATGGAGAAGC------GGCGCTGCATTTCTCAATCCTTTCCTTGGTGCATTTCTTGCCTTCTTT
CTTGAATCTTGAGTGCTGCTAGGTGCTAGTTGTTC-TTAAATCAAGCGCAAACATATATTTGGAGTATGTTTTAGTTTGA
ACACTG-----------ACCATGGATGGATGTGAATGTGCTGCAGGTTGCTAGC-----TGGAAGTGGAGGATGGAGCGG
GCGAACACGGAGCTGTACCTGGAGAACCTGCGCATCATGCAGGCGAACGAGCGGCTCCGGAGGACAGCGCAGCTGCTGGA
CCAGGAGAACAAGCAGCTCCTCGCCGATGTCAAGCGCAAGCAGCAGCACATGGCGGCCTCCTCCAAGGCGGCGGC-----
-GGCGAAGGGCGGCGGACCGTCCG---------------------GCGCGGCGCCGTCCAAGTCCGGCAAGCAGCAGCCC
CAGTGATCGCGCCGGAGATGCGCGCGCGCGTGCATGCATGCAGTCGTGGAAGCTCTAGTCATCTTTGCCAAAAACTAGCT
AGTAGTAGTACCAGTAGTATGGAGGACAGGGCGTCGACCAGTTGGCTGGGCAGCTGAGGTTTCTGCCAGCCCGCCCAAGT
TCGAGTCTCGGCACGAACACGCGGTGCTCACGGAGTTTCTCCTATAAAGAAAAGCCAACAAGGGTTAGCCTTTGGGTTGG
TCTCATTTTTTTGTAGTACCAGTAGTATGTAGTGTACGTACTAGATAGGTCCATTAGAGCTGGCATGGATGGTTTAGTTC
TAC-TTTGGTTATGTAGCTA---------------------------------TATATTTGCATGGCTTTTCTTGTTGCG
GTGTGATGGCCTGAGCCCTCATGGGTACGAAAGA-----------------TAGTTCACGTTATTCCAGTATTGTACTTG
CGAAATCTGCAGTTTAACGTGAACAATTTGCGAAAATCCATC-TTTTACAAACACGGCGTCATGTTTATGCAATGCCACA
CAGGTGAATGCGTTTCAACAAGTGAGGCTCCTTGACTGAT------------------------------TTTCTTTTCT
TTTCA-AAAAGGGGTGCCTCACAGGATGCATGCACACAACCATTCTTTGACTGAAATAGGTTCCGAGTTTGCTGGATATT
ACTTCAATCAGACCACACT----ATAAACACTAAAAAAAACTCTGAGGAGGATTCCAACAT-TAGTACTATAAATACAAC
TCAATTCCACCAAAAAAAGGGGGTTTATATTGTTTGTTTTTCTTGCAACAGAGGTACTCAGATGTGGCATATA-TTCCTG
GCTTTCCGATGACAGTAAAGCAGGAAATGAG---GAGTATAGAACAGTATTCTGATCATGATCTCTTGGGTGGACGTGGT
ACAACACGATCGGTTGAACTCGTGAATTGAATTGCAATGGATGTAGCGCTTGACTCGAGGTTGCATGCAATGCAATTGAC
CCTCAACTGCAGACTACGTCACCAGCACTCGAGTGAGCCCATGTCCAGTCCAATTAAT
>chr6A_65
ACT----------------------------------------------------------------ACTTTCATCTGTT
TAGACTAAATTTTGTCAGAATTTGTGTTTGAAACATTTGAAATGGCCAGACATCTCGTGACTACGGTTGGATGGTTGGCG
CCCCGTCCGCTGTCCACGAACTCATTTAGTGTCATCGAATCATTTAGTGTCATCCATTCGGTGATCAGTGTTGGAGTTGC
CCTTTCTCATTTTCCCCAAGGATAATGCTAGTACTCCAAGGAAATCTTACCAATTCGTGGAGAATGCATGCACCTGGTTT
ACGAATTCTTTGGTGCACTGTGTAAGCTCCAAGTTTGACCGTTTGTGAA-----GGGA-GAGAGAC--TGGGATGAA---
-----------TGCG-------TTGGAAATGCTGTCAGCCGGGAGAAGCGCGCGGCACGGCCGAGAATAAGAATGATTGC
GTATCTTTGGACGGAG---AACCAGAAGTGCGTCATCAATTCATCACCATCATCACACTTTCTCATTGACAGCTAACCAC
AACCATGAATGTACACTGTACACATCCTTG------AGAGCCCTAGGCAG--CTCGGCCTGCATTCAAGCTGTGCAGGAG
AACACTGGAGTAGTAACTGGATT------------CGGTCACATGCACATTTCCATCCACTGCTTTGCTGGGGCGCGCGG
GCCTATAAATACGCCCTCTCCCGTCTCCTCTCCCCACACC----ACAAGTTCTTTCTCCCCCACTCG--AGCTAGCTAGC
CTTCTTCTTCCTC--T--GCTACAAGTGCCAGT------------CTTCC-----GAGCCCGAGTACTACCATTTCAGCA
CCTCAGAAAGAGGTATATGAAGAAGT------AGCACTGCATTTTCACAATCCATCTTTGGTGCATTTCTTGCCTTCTTT
CTTGAATCTTGAGTGCTGCTAGGTGCTAGTTGTTC-TTGAATCAAGCACAAACAT----TTGGAATGTGTTTGTGTTTGA
ATACTATCTAGTATCTAACTATAGATGGATGTGAATGTGGTGCAGGTGGCTAGC-----AGGGCGTGGAGGATGGAGCGA
GCGAACACGGAGCTGTACCTGGAGAACCTGTGCATCATGCAGGAGAACGAGCGGCTCCGGAGGAAAGCACAGCTGCTGGC
CCAGGAGAACGAGCAGCTCCTCGCCGATCTCAAGCGCAAGCAGCAGCACATGGCGGCCTCCTCCAAGACGGCGCCCCAGA
TGGCGAAGGGCGGCGAGCCGTCCG---------------------GCCT---------CAAGTCCGGCAAGCAGCAGCCC
CAGTGATCGCGCCGGAGT----CGCGCGGGTGCGTGAATGCAGCCGTGGAA-----------------------------
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>chr6B_280
GGAAAGCT------------------------------------------------------------------------
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----------------------------------------------TTACAAATTCGTCGAGAATGGATGCAC-TAGTTT
GCAAATTCTTCAGGGCTGTGTAACTCCAT-AAGTTTGACTGTTTCTGGTTTCTGGAGA-GAGAGAG--TGAGAGACTGAA
GGGATGGGTACTACG-------TTGGAAATTCTGCCGGCCGGGAGAAGCGCACGGCAGGGCCGAGAATAAGAATGATTGC
GTATCTTTGGACCGAG---AACCAGAAGTGCGTCATCAATTCATCACCATCATCACACTTTCTCATTGACAGCTAACCAC
CTCCATGAATGTACACATCC-------------TGCAGAGCCCTAGGCAG--CTCCGCCCGCATTGAAGCTGTGCAGGAG
AGGAGAACACACTCTTTG-----------------------------------GATCCA---CTGCTTTGCT-GGAGCCT
GCCTATAAATACGCACTCTCGCGTCTCCTCTCC-----------ACAAGTTCTTCCTCACTCC------AGCCAGCTAGC
CTTCTTCTTCCTC--T--GCTACTAGTACCAGTGCCTGTCCGTGCCTTCC-----AAGCCCGAGTACTACCATTTCACTA
CCTCAGAAAGAGGTAC--GAAGAAGTAGCACTAGCACTGCATTTTCACAATCCATCCCTAGTGCATTTCTTGCCTTCTTT
CTTGAATCTTGAGTGCTGCTAGGTGCAAGTTGTTTCCTAAATCAAGCGCA--------------GTATGTTTTAGTTTGA
ACTG----T-------AACCATAGGTGGATGTGAATGTGGTGCAGGTGGCTAGC-----AGGGCGCGGAGGATGGAGCGG
GCGAACACGGAGCTGTACCTGGAGAACCTGTGCATCATGCAGGCGAACGAGCGGCTCCGGAGGAAGGCACAGCTGCTGGC
CCAGGAGAACGAGCAGCTCCTCGCCGATCTCAAGCGCAAGCAGCAGCACATGGCGGCCTCCTCCAGGGCGGCGCCCCAGA
TGGCGAAGGGCGGCGAGCCGTCTGGCCATAACGCGGCCA------GCCT---------CAAGTCCGGCAAGCAGCAGCCC
CAGTGACCGTGCCGGAGT----CGCGCGCGTGCGTGCATGCAGTCGTGGAAGCCGTACTCGTCTCTGTGAAAAAACTAGT
AGGAGTAGTA----------------------------------------------------------------------
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>chr6D_281
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----------------------------------------GAAAGCTTACCAATTCGTCGAGAATGCATGCGCCTGGTTT
GCAAATTCTTCAGGGCTGTGTAACTCCAT-AAGTTTGACCGTTTCTGGA-----GAGA-GAGAGAGACTGAGAGACTGGA
GGGATGGGTACTACG-------TTGGAAATGCTGCCGGCCGGGAGAAGCGCACGGCACGGCCGAGAATAAGAATGATTGC
GTATCTTTGGAC-GAG---AACCAGAAGTGCGTCATCAATTCATCACCATCATCACACTTTCTCATTGACAGCTAACCAC
CTCCATGAATGTACACTGTACACATCCTCCAGCCCT------------AG--CTCGGCCCGCATTGAAGCTGTGCAGGAG
AGGAGAACAC-------------------------------------CATTTCGATCCA---CTGCTTTGCT-GGGGCCT
GCCTATAAATACGCACTCTCGCGCGTCTCCTTCCCACA---------AGTTCTTC--------------------CTAGC
CTTCTTCTTCCTC--T--GCTCCTAGTGCCAGTGTCTGTCCGTGCCTTCC-----AAGCCCGAGTACTACCAT-------
---CAGAAAGAGG--TATGAAGAAGT------AGCACTGCATTTTCACAATCCATCCTTACTGCATTTCTTGCCATCTTT
CTTGAATCCTGAGGGCTGCTAGGTGCTAGTTCTTC-TTAAATCAAGCGCAGACAT----TTGGAATGTGTTTGAGTTTGA
GTACTATCT-------AACTATAGATGGATGTGAATGTGCTGCAGGTGGATAGC-----AGTGCGTGGAGGATGGAGCGG
GCGAACACGGAGCTGTACCTGGAGAACCTGTGCATCATGCAGCAGAACGAGCGGCTCCGGAGGAAGGCACAGCTGCTGGC
CCAGGAGAACGAGCAGCTCCTCGCCGATCTCAAGCGCAAGCAGCAGCACATGGCGGCCTCCTCCAAGACGGCGCCCCAGC
TGGTGAAGGGCGGCGAGCCGTCCGGCCATAACGCGGCCA------GCCT---------CAAGTCCGGCAAGCAGCAGCCC
CAGTGATCTCGCCGGAGT----CGCGCGCGTGCGTGCATGCAGTCGTGGAAG----------------------------
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>chr6D_283
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------------------------------------------AAGCTTACCAATTCGTGGAGAATACATGCACCTGGTTT
ACAAATTCTTTGGTGCACTGTGTAAACTCCAAGTTTGACCGTTTGTGAA-----GGGA-GAGAGAC--TGGGATGAA---
-----------TACG-------TTGGAAATGCTGCCAGCCGGGAGAAGCGCGCGGCAGGGCCGAGAATAAGAATGATTGC
GTATCTTTGGACCGAGAGAAACCAGAAGTGCGTCATCAATTCATCACCATCATCACACTTTCTCGTTGACAGCTAACCAC
CACCATGAATGTACACATCC-------------TGCAGAGCCCTAGGCAG--CTCGGCCTGCATTGAAGCTGTGCAGGAG
ACT------------ACTGGAGTA---------------------CACATTGCGATCCACTGCTGCTTTGCT-GGGGTGG
GCCTATAAATTCGCACCCTCGCCTGTGCTCTCCCCCCACC----ACAAGTTCTTCCTCACTCGAGCTATAGCCAGCTAGC
CTTCTTCTTCCTC--T--GCTACTACTGCCATTGTCTGTCCGTGCCTTCC-----AGGCCCAAGTACTGCCATTTCAC--
-----------GG--TATGAAGAAGC------AGCACTGCATTTCTCAATCCTTTCCTTGGTGCATTTCTTGCCTTCTTT
CTTGAATCTTGAGTGCTGCTAGC-------TGTTT-CTAAATCAAACGCACGCAT-TTGTCCGAATATGTTTTGGCCTGA
GTACTA---C-TAACTTGCTATCGATGGATGTGAAGGTGCTGCAGGGGGCTAGCTTAGCAGGGCGTGGAGGATGGAGCGC
GCGAACACGGAGCTGTACCTGGAGAACCTGTGCATCATGCAGGCGAACGAGCGGCTCCGGCGGACAGCACAGCTGCTGGC
CCAGGAGAACGAGCAGCTCCTCGCCGATCTCAAGCGCAAGCAGCAGCACATGGCGGCCTCCTCCAAGACGGCGGCCCAGC
TGGCCAAGGGCGGCGGGCCGTCCGGCGCTAACGTGGCGTCGGCGCGCGCGGCGCCGTCCAAGTCCGGCAAGCAGCAGCCC
CAGTGATCGCGCCGGAGATGCGCGCGCGCGTGCATGCATGCACTCGTGGAAGCTGTAGTCATCTTTGCGAAACACTAGCT
AGTAGTAGTA----------------------------------------------------------------------
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---------------------------TGTAGTGTACGG----GATAGGTCCATCAGAGCTGGCATGGATGGTTTAGTTC
TACTTTTGGTTATGT--------GTAGCAGCTAGCGCTTTGGCCTTTGGGGGTTATATTTGCATGGCTTTTCTTGTTGCA
GTGTGATGGCCTGAGCCCTGATGGGTACGTAGGTACCAGAGTACGAAAGATTAGTTCACGTTATTCCAGTAATGTACTTG
CGAAATCCGCGGTTTAACGTGAACAATTTGCGAAAATCCATC-TTTTACAAACACGGCGTCATGTTTATGCAATGCCAGA
CAGGTGAATGCGTTTCAACAAGCGAGGCTCCTTGACTGAT------------------------------TTTCTTTTCT
TTTTCGAAAAGGGGTGCCTCACAGGA----GGCACACAACCATTCTTTGACTGAAATAGGTTCCGAGTTTGCCGGATATT
ACTTCAATCAGACCACACT----ATAAACACTAAAAAAAACTCTGAAGAGGATTCCAACAT-TAGTACTATAAATACAAC
TCAATTCCACCAAAAAGAA-GGGTTTATATTGTTTGTTTTTCTTGAAACAGAGGTAGTCAGATGTGGTACATT-TTCCTG
ACAGT------------AAGCAGGAAATGAA------TATAGGACAGTATTCTGATCATGGTCTCTTGGGTGGACGTGGC
ACAACACGATCGGTTGAACTCGTGAATTGAATTGCAATGGAGGTAGCGCATGACTCGAGGTTGCATGCAATGCAATTGAT
CCTCAACTGCAGACTACGTCACCAGCACTCGAGTGAGCCTAAGTCCAGTCCAATTAAT
>chr6B_306
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-----------------------------------------------------------------GCATGGACCTGGTTT
ACAAATTCTTTGGTGCACTGTGTAAACTCCAAGTTTGACCGTTTGTGAA-----GGGGGGAGTGAC--TTGGATGAA---
-----------TACGTTGGAACTTGGAAATGCTGCTAGCCGGGAGAAGCGCGCGGCACGGCCGAGAATAAGAATGATTGC
GTATCTCTGGACCGAGAGAAACCAGAAGTGCGTCATCAATTCATCACCATCATCACACTTTGTCATTGACAGCTAACCAC
CACCATGAATGTACACTGTACACATCCTCCATATGCAGAGCCCTAGGCAGCTCTCGGCCAGCATTGAAGCTGTGCAGGAG
AAC------------ACTGGAGTAGCAACTCGAGACGGTCACATGCACATTTCGATCCACTGCTGCTTTGCC-GGGGCGG
GCCTATAAATAAGCGCCCTCGCCTGTGCTCTCCCCCCACCCACCACAAGTTCATCCTCACTCGAGCTATAGCTAGCTAGC
CTTCTTCTTCCTCTCT--GCTACCAGTGCCTTTGTCTGTCCGTGCCTTCCGATCCAGGCCCAAGTACTGCCATTTCAC--
-----------GG--TATGAAGAAGC------GGCACTGCATTTCTCAATCCTTTCCTTGGTGCATTTCTTGCCTTGTTT
CTTGAATCTTTAGTGCTTCTAGC-------TGTTT-CTAAATCAAACGCATGCAT-TAGTTGGAATATGTTTTGGTCTGA
GTACTAGTAC-TAACTTGCTATCGATGGATGTGAAGGTGCTGCAGGGGGCT------------CGTGGAGGATGGAGCGG
GCGAACACGGAGCTGTACCTGGAGAACCTGTGCATCATGCAGGCGAACGAGCGGCTCCGGCGGACAGCACAGCTGCTGGC
CCAGGAGAACGAGCAGCTCCTCGCCGATCTCAAGCGCAAGCAGCAGCACATGGCGGCCTCTTCCAAGACGGAGGCCCAGC
TGGCCAAGGGCGGCGGGCCGTCCGGCGCTAACGTGGCGTCGGCGGGCGCGGCGCCGTCCAAGTCCGGCAAGCAGCAGCCC
CAGTGATCACGCCGGAGATGCGCGCGCGCGTGCATGCATGCAGTCGTGGAAGCTCTAGTCATCTTTGCGAAAAACTAGT-
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--------------------AGTAGTATGTATTC------CTAGATAGGTCAATTAGAGATGGCATGGATGGTTTAGTTC
TACTTTTGGTTATGTAGCTAGTGGTGGCAGCTAGCGCTTTGGGGGCTATATAT--------------TTTTCTTGTTGCG
GTGTGATGGCCTGAGCCCTGATGAGTGCTTGCGA----------------------------------------------
--AAATCTGCAGTTTAACGTGAACAATTTGCGAAAATCTGTCTTTTTACAAACACGGCGTGATGTTTATGCAATGGCT--
CAGGTGAAGACGTTTCAGCAAGTGAGGCTCCTTGACCGAATCACCGAAATAGGCTAGGCTCCTTGACTGATTTTTTTTCT
TCTGA-AAATGGTATTACTACCAGGA----TGCACACAACCATTCCTGTACTGAAATAGGTTTTGAGTTTGCTGGATATT
TCTTCAATCAGACCACACTACAAATAAACACTAAAAAAAACTCTGAAGAGGATTCCAAAATATAATACTATAAATGCAAC
TCAATTCTACAAAAAAAGG-----TTATATTGTTTGTTTTTCTTGCAACAGAGGTACTCATATGTGGTATATATTTCCTG
GCTTTCCGGTGATAGTAA-GCAGGAAATGAATATGAATATAGAACAGTATTGTGATCATGATCTCTAGGGTGGAGGTGGC
ACAACACGATCGGTTGAACTCGTGGATTGAATTGCAATGGAGGTAGCGCTTGACTCGAGGTTGCATGCAATGCAATTGAC
CCTGAGCTGCAGACTACGTCACCAGCACTCGAGTGAGCCCAAGTCCAGTCCAATTAAT
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
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-----------------------------------S--------------------------------------------
----------------SS--------------------------------------------------------------
-------------------S---------------S--------------------------------------------
-------------------------------------------------------S--S---------------------
-----S----------------S------------------------S-----------S--SS----------------
------------------------------S-------------------------------------S----------S
----------S-----------------S---------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------S-----------
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS------------------SS----------------------------------------
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-------------------S---------S-S---------------------------------------S--------
------------------------------------------------------------------------------S-
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---S----------------------SSSS--------------------------------------------------
----------------------------------------------S---------------------------------
-------------------S-----------------------------------------------S------------
--------S---S-----------------S-----S------------------------------------------S
-----------------------------------------S--------------------------------------
-----------------------------------------S----------------
>forward_28
--------CTGACGACGTTTGCGAACAA----------------------------------------------------
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>reverse_1200
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-------------------------------------------------------------------------------A
CCAGGAGAACAAGCAGCTC-------------------------------------------------------------
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>forward_30
----------GACGACGTTTGCGAACAAGG--------------------------------------------------
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>reverse_1582
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-------------------------------------------------------------GGGTTAGCCTTTGGGTTGG
T-------------------------------------------------------------------------------
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