>input_sequence_86504
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-------------------------------------------ATGGGACGGGTCTA----CTTCGAAACAGACTGTATG
AGTCTTCACCAGGCGCTGTCAAGCACTGCCATGGACCGGGGTTCGCTTGGTTTTCTCTTCCGCGAGGCAAAATACCTCAT
GCATTTAGGTTTCTTTGAGTATAAAACCATGTACTGCTCTCTGGTCTGTAATCTCCCAGTGCATGTGTTGGCTAAGGCTG
GGGTGTGTGGAGTTCCTGATAGCGAGCAAATCTAG---------------------------------------------
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>chr6A_1_TraesCS6A01G087900
AGCGATCGATCGATCGATCCCCTCTCCGCCCCTCTCCTCTGCTTGGATGGAACTATACTAAAGCTATTTCCTGGTATATC
CTCAGTTTTGGTGCTTGCCTAATTATTCACTCAGGCTGTTTTCGGGTCGGTTTATTCTTGGGTGGGTGACAAATTG---A
GGCGGAGGTGGAGAAACGGTGCAGGGAGGCCGGAAGACGGCCCCGTGACCGCCGGAGAAATAGGAGGAGTTAGCTTTGGC
TTAGGTCTGCTTAGCTTTTATCCATTCATGGCGTGCATGCAGACGCGCGGATGGAAATTGTTTTGGAAACGGACGCGTAC
AAGGAAACTATCTCAACAGTTGGCCAGGGACGGATTCAGGGGAGAAAATAAATAAATGGGAACGCTGTTGTGCTGACGTT
CCTGGGAAGGCATGGCAAAATGGACGTTTCTCATTTACATTGTCTATTTTCTTTTTGCGAGCTTGTAATTTACATTGTCT
CGAGGATGGCAAATTCCTTCTCAGAGCACGGTAAATCCTGGCAAAAA---AAATGAACTGGGCGGGTATGCCGTGCTCAA
GAGAATTGCCAAAT----AATCAAAATCAATGTCGACCAATCTTTCCTTACGGACACGGGATAAGGAGGGTGGGGTCTTA
---------TACAATGGTTGATAAGATAGTTTTATCTTAAGTCTTGCATGTAATTTAGAGATGACAAAAAAACATGTCTA
CAATGGGTTATCTTTTAGTCTTATCTTTAATAATTAGATATTCCTAAAAATATGATGAGACATATTGTGCTAAAAAATCA
TTTCTTAAATAAGAGAAGACAAGTCTTTTTTTATAATTTCTCTCCTTTCCACCTCATTATTTTCATCATTTATCCTAGGT
GGCACTCCTAAAATAGCACCATGCATTC--CCTAATGGGAACGGCGAGGTCGTTGCTGC---GGAAATTGCTGAACGAGG
GTACCGCTCTTCAGGCTCAAACT---------------------------------------------------------
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-AAAGCCTATGGAAGGCCATCCAAGTTGCGG-AAGTGCATGGTATGGGACGGGTCTA----CTTCGAAACAGACTGTATG
AGTCTTCACCAGGCGCTGTCAAGCACTGCCATGGACCGGGGTTCGCTTGGTTTTCTCTTCCGCGAGGCAAAATACCTCAT
GCATTTAGGTTTCTTTGAGTATAAAACCATGTACTGCTCTCTGGTCTGTAATCTCCCAGTGCATGTGTTGGCTAAGGCTG
GGGTGTGTGGAGTTCCTGATAGCGAGCAAATCTAGCTAACAAACTTCCTGTCCGATGTACTCCGTGTGCCCACCAATTTG
GTTGGTCCCCCGTAATCTGGAATGCGGGGTGTTCCATAAGG--------AAAAAGGAAAATTTCCATCCACGAAAAACAC
AAATGATCATGCAAAACATTCACATTTGTCATCCTCCTCAGCAAAATGTTCCCTGGTTAAGCCAGCCCAAAAAATAATCT
TGGGATAGGGCCTCATAGTCTTCCTCATGGCCCCCTCCTTAGAACATCTACATCCAGACTTAGCAAATCTGGCCTCCTAA
ATGTGCACGAACCCCCTGGTAGCGGCATACATGATGCTACAATGGGCGGGCAGCGGTGTTCGGACCGGCGCCTGGAGGTG
TTGGAACCGGTGCACAGGATGCTGGTACCGGCCACCGCGGGTGTTGGAACTGGCTACTACGGGTTCTACAAGCTGCTCAT
TGGCGGTGTTGGAACCGGCCTCGTGGGGAGCTACAACTGGCAAATTTTAGCGCTACAGTGGGCACCATCAGATGCTGGAA
CCGATCGATTGTTTTGCTACAACCATGAGGAGGTGGCGCCGCTACGATGAACTGTGGTGCCGAGATGGCTACAACCAACA
ACGGTAGAAGCTGGAACTGGC--AAAAAAATGTTACAATTGATGACAATGA-GCTAGGGCGACGATGGGGGTGGTGTCGT
GATTGCCACGACCAGCAACCATAAAAGCTACGAAAGGTGAGTTGTTTTGCTACAATGGTGGAGGGTGGAAGTGATGACCA
GTAGATGACGATGATGTGAGCGATGCGCACCCGGTCGGCGGCCAGTCGGCGCTCCCGATGCTGCAATTGCTGGCGGCCGA
GGCTGCGTGGCGGGGATGTGACTGTCCATAGCAGGAGCTGCAAGCAACCACGACCGAGCCATGGCCTGTTGCAGGGGCAA
ACAACGATGGAGATAGACACCTTTGTGCCGCTGGAGCCGGGGGAGGGGG-TTTATTTCCCCTTCACCCACTAGTAGAAAA
AGGACCT
>chr6B_1
AGCGATCGATCGGTCGATCCCCTCTCCGGTCCTCTCCTCTGCTTGCAAGGGACTATACTAAAGCTATTTCCTGGTATATC
CTCAGTTTTGGTGCTTGCCTAATTATTCACTCAGGCTGTTTTCGGGTCGGTTTATTCTTGGGTGGGTGACAAATTAATAA
GGCGGAGGTGGAGAAACGGTGCAGGGAGGCCGGAAGACGGCCCCGTGACCGCCGGAGAAATAGGAGGAGTTAGCTTAGGC
TTAGGGTCTGCTAGCTTTTATCCATTCATGACGCGCATGCAGACGCGCAGATGGAAATTATTTCGGAAACGGACGCGTAC
AAGGATACTATCTCGCCACCTGGCCAGGGACGGATTCAGAGGAGGGGAA----AAATGAGAATGCTATTGTGCTGACGTT
CCTGGGAAGGCATGGCAAAATGGACGTTTCTCGTTTACATTGTCTT-----TTTTTTGGAACTTCTCATTTACATTGTCT
CGAGGTTGACAAATTCCTTCTCAAAGCACGGGAAATCCTGGCCAAAATAAAAATGAACTGGGCGGATATGCCATGCTCAA
GAAATTTACCAAATAATCAATCAAAATCAAGATCGACCCATCTTTCTTTGCAGACACGGGAGAAGGAGTGCGGGGTGATG
TAAGGCATGTACAATGGTTGATAAGATAGTCTTATCTTAAGTCATCCACGTAATTTAGAGATGATAAAAAAA-ATGTCTA
CAGTGGGTCATCTCTTAGCCATATCTTCAATAACTAGATATTCCTAAAAACGTGATGAGACATATTATGCTAACAGATCA
TCTCTTAAATA------------TCTTTTCTTTCAACTTTCCTCTCCTCTACC---------TCATCATTTATCCTAGGT
GGCACTCCTAAGATAGCACCATTATATATGCCCAATGGGAACGGCAAGGTCGTTTGCTGCTGGGAAATTGCTGAACCAGG
GTACCGCTCTTCGGGCCGAAACTAAGGGCATGTACAATGGTTGATAAGATAGTCTTATCTTAAGTCTTGCATGTAGTTTA
CAGATGACAAAAAATATATATACAATGGGTCATCTCTTAGCCTTATCTTCAATAACTAGCCATTCCTAAAAACGTGGTGA
GACATATTGTGCTAAGAGATCATCTCTTGTCTTCTCTTAAATAAGTGAAGACAAAGCCTTTTCTTAGGGCATGTACAATG
GTTCTATCTTAGCAATGCCACGTAGGATAGATGTTGAGGTGGAGGAGAGAGAACTCATAAGAAAAGACGTGTCTTCTCTT
ATTTAAGAGAAGACAAGAGGTGATCTCTTAGCACAATATGTCTCACCACATTTTTAGGAATTACTAGTTATTGAAGAAAA
TGCTAAGATATGACCCATTGTAGACAATTTTTTTTGTCATCTCTAACTTAAGATAGGACTATCTTATCAACCATTGTACA
TGCCCTTATGAGTTATCTCTCCTCCATCTCATCATTTATCCTACGTGGCACTCCTAAGATAGCACCATTGTACATGCCCT
AAAGGCCTATGGAAGGCCATCCAACTTGCAGAAAGTGCATGGTATGGGACGGGTCTAGCTACTTCGAAAG-GACTGTATG
AGTCTTCACCAGGTGCTG-CAAGCACTGTCATGGACGGGG-TTCACTTGG-TTTCTCTTCCGCGAGTCAAAGTATCTCAT
GCATTTAGGTTTCTTTGAGTATAAAACACTGTACTACTCTCTGGTCTGTAATCTCCCAGTGCATGTGTTGGCTAAGGCTG
GGTGT---------------------------------------------------------------------------
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>chr6B_1191
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-----------------------------------------------------------------------------CTG
GGGTTTGTGGAGTTCCTGATAGCGAGCAAATATAGCTAACAAATTTCCCGCCTGATGTACTCCATGTGCCCACCAATTTG
GTGGCCCCCTCGTAATCTGGAATGCAGGGTGTTCCATCTCAAAGGAAAAAAAAATGAAATTTTCCATCCGCGAAAAACAC
AAATGATCATGCAAAACATTTACATTTGTCATCC---TCAGCAAAATGTTCCCTGGTTAGGCCAGCCCAAAAAATAAGCT
TGGGATAGGGCCTCATAGTCTTCCTCGTGGCCCCCTCCTTAGAACATCTACAACCAAACTTAGCAAATCTGGCCCCATAA
AGGTCCACGAACCCCCTGGTAGCGGCATACATGATGCTACAATGGGCAGGCAGCGGTGTTCGGACCGGCGCCCGGAGGTA
TTGGAACCGGTGCATAGGATGCTGGTACCGGCCACCGTGGGTGTTGGAACTGGCTACTACGAATTCTACAAGCTGCTCAC
CGGTGGTATTAGAACCGGCCTTGTGGGGAGCTACAACCGGCAAATTTCAGCGCTACAATGAGCACCATCAGATGCTGGAA
CCAACCGATTGTTTTGCTACAACCATGAGGAGGTGGCGCCGCTACGATGAACTATGGTGCCGAGATGGCTACAACCGACA
ACGGTAGAAGCTGGAACCGGTAAAAGAAATTGTTACAATTGATGACAGTGATGCTGGGGCGACGACGGGGGTGGCATCGT
GATTGTTGCGACCAGCAACCATAAAAGCTACGAAAGGTGAGTTGTTTTGCTACAATGGTGGAGGGTGGAAGTGATGACCA
GTAGAGGACGATCATGTGAGTGGTGCGCACCCGGTCGACGGCCAGTCGGTGCTCTCGGTGCTGCAATCGCTGGCGGCCGA
GGCTGCGAGGCGGGGATGTCC--GTCCGTAGCAGGAGCTGCATGCAACCACGACCGAGCCATGGCCTGTTGCAGGGGCAA
ACAACAACGGCAATAGACACCTTTGTGCCGCTGGAGACGGGGGAGGGGGATTTATTTCCCCTTCACC-------------
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>SNPs
------------S---------------SS---------------S-S--S-----------------------------
---------------------------------------------------------------------------S----
----------------------------------------------------------------------------S---
-----SSSSSS-------------------S--S--------------S----------S---S----------------
-----S--------SS--SS-------------------S----SSS-SSSSS-----S---S---S-------------
--------------------------------S------------SSSSSS-----SS--S---S-S-------------
-----S--S--------------S-------S----------S----------------------S------S-------
--S-S--S----------------------SS------S-------S--S-S---------S------S-S-----SS-S
------------------------------S------------S-S--S---------------S-------S-------
--S-----S----S----S-S------S-----S----------------SS--------------S------S-S----
-S---------SSSSSSSSSSSS------S--SS--S--SS---SSS--S---SSSSSSSSS------------------
-----------S----------SSSS-S----S------------S--------SSSSS-----------------S---
------------S---SS--------------------------------------------------------------
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---S--------------------S----S---------------------------------------SS---------
-------------S----S---------S-------S---S---S-----S---------------S----S--S-----
---------------------------SS------S--------------------------------------------
----S--------------------------S-----------S----S-S-S----------S----------------
--S-SS---S---------------S-----------SSSS-------------S----S---------S----------
--------------------S-------------SSS----------------------S-----------------S--
--------------------------S-------------------------S---S-----------------S-S---
-S--S------------------------------------------S------------------------S------S
--------------S----------------------S-----------------------SS----------------S
S--S---S--S----------S---------------S---------S---------S--S-------------------
--S-S------------------------------------------------S----------------------S---
-----------------S--S----S---S-----------------S-------S---------S--------SS----
-----SSS------------------------------------------------------------------------
-----S------S-------S-S--------------S-----------S----S--S---------S------------
-------S-----------SSSS----S--------------S-------------------------------------
-----S-S--SS------------------------S------------------------------SSSSSSSSSSSSS
SSSSSSS
>forward_638
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----------------------------------------------------------GGATAAGGAGGGTGGGGTCT--
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>reverse_2027
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--------------------------ATGGCCCCCTCCTTAGAACA----------------------------------
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