>input_sequence_86502
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---------ATGGCTGGGGTGGTCGGCGTCTGGTTCGCTAAGTTCGGCCGGGAGGCGGCGCCGGCGGCAGAGGCCGAGGC
CGAGGTCGTCGGCCGGCGACACCAGGGCGACGGCCTGCTCGAGGTGGAGGCCGTGAAGACG------GTGCAGATCCAGG
AGAGGAGGAGGAGGAACAGCGCCGTCCTCGCCAACTCCGAGGACACGGTGTGCATGCTCATGGACCGCTTCGCCCCGGCC
TGA-----------------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G413000
TTTTTGCTTCTTATACATTACCAAGAAGTCGGAGGTTTTTGGAACGGACGAGAAACTCAAACTTGACATAAAGAAATATC
TCGTTTCACTGAGATATTTTGCTTCAATTCTTACCAGAAACTAAGACATGAAGTACAGAAGTTGCATCGTGTGTTAGCCA
GTGCAAACGTTTTCTCTCATGTCTGAACTTCACCTGCCCATGCATACTGAACGTTTTCTCTGAACCTCAACGTTCCCGCT
GCTGCTGCACCTCACAAAACGTTCCGACCTCTGGCGCGCTCCGCGGACCGCGGATCGGGCATAAACCTTGGTCAGATTCT
TCGATCCCCCGGATCAAATACTACGTCCGCGTGGTGCAGGCGTGCAGCGAACCTGGACGGCACAACCATGCGGGCACGGG
GCGCGGTGAGCACGTACGTGAGGGCGACGGTCCGCGTCGCCGGCCGCTGCACTTGCACCCGCCCCCGGGGCAGCCAGTAG
TCAC--CGCGCGCGCAGCATCCTGGCAGCGGCATCTCTCTCCGGATCCGCCCGCGCGCGGAATCAATCGTACGCGCGAGG
ATATCC-----CCTCTCCACCGCGCGCGCGACGGCAGCCTCACGTTCATTAGCTTGGCCTCCGATCGCGCGTCTCGCCGC
GCCGTGCGTCACATGGCAAATGCACGGCGCGGCATGGGCCTGCGCCGCAACGGACAAAGCCGATAAGCTGTGGCCGCTCG
CCCGCCACTCGGCGGCACCCAAACAAAACACCGGCCCGACGTGGACCA--------GGCCCCGCGCGCAGTTTCCTCCAC
TTTTCCCACTGGCAG-------CAGCTCGCGAGTCGTGAGTGCCAATG---GGTGCCTTCCTTCACACCTGCGAGCTGTA
TAAGTAGAGCCGGGCACCCAGAGTAAAAGGAACATCCACCCAACACCAACACCCAAGCAGTGAAAGAGAGGAAGCCGGAG
CTACCTCAAGAGCCTTCTTTTCCAGCGAGTGTGCTGTGTACGTAGCAGAGCGAAGAGTTAGAG-----------------
-------CAATGGCTGGGGTGGTCGGCGTCTGGTTCGCTAAGTTCGGCCGGGAGGCGGCGCCGGCGGCAGAGGCCGAGGC
CGAGGTCGTCGGCCGGCGACACCAGGGCGACGGCCTGCTCGAGGTGGAGGCCGTGAAGACG------GTGCAGATCCAGG
AGAGGAGGAGGAGGAACAGCGCCGTCCTCGCCAACTCCGAGGACACGGTGTGCATGCTCATGGACCGCTTCGCCCCGGCC
TGATGCGCCGGTGAACCGGCGGTGTCCGTCCGTACGTGTAAATTCCAGGGCACGTA----CGTAGGGGCGCGGGCACAAG
GGAGGAGTCTATGCCTTGTGCTGTGGTTGTGTGGGTTCCTCTTGTACATAAGCTCTTTTTCATCGCTAATCGAGTGATCG
TA--------GTAGTAGTGCTCATGCCTTTCGTTAAAAAAAGGATAATAAATAAATTATGCGGCCAGTTGAATCAACTGT
ATCATATCATGTACTCTTAT---GTATGACTGTATCCTTTGAATGGATTCGTTTGGTTTCTATGGCATCTCTGTTGCTG-
--CTGCTTTTTCTTAGTTGGTGTTGGTGCTGCTTTTGGTGAT--------------------------------------
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ACATTTGCTATTGTGGTTTTGTTCAATCTTTTTCCATTTCTTTCTTTTTAAGAACGACGGGGAGTTTATACTTCTTGCAG
CATTTTGTCAAGAGCTGTTTATTGTCAGCTGGCATG---ATCCAACCTATGTTTTCCGTTGTTGAACTACTCACTAAAAT
TGGGGGAAATGTTAATTGGCCAAATGATAAATAAGTATCGCACGAGATGCTCCAACGACAGACTCCCTCCGTCCCTAGTG
TCAAAAACGTCTTACATTATGGGACGGAGTGAATAGAAGATACCACGAGGATTTGGCAACACATCGGCATCATCCCCACC
CTCACCTTCGACGATCCATAGGATTGT--ATTGCCCCTGGAGTCGAACACTCTACTTGAACTTATATCCTACTGGAAATG
GCTATTCTTTGAATGATCTGGGATGCACGAAACGCCAAGACTTTTGGGGGCGAGGACATCCATACTGCGGCGACCTTCAT
CTTTGGTATCACCGTCTCTCCAAACAACACGATAAGGTGGTTGTTTTCTCGTGGCAACTTTACCTTTCTTCGTGCGTGAA
GATGCCCTTGTAATTCACCTTGCTTCTCCAAAGAGTGGCGATGTGTTAACTTGT-TTGTGTTTGGCACAAGTGCGGAAGT
GCCACTCTTAAAGAAATCCATCAAA
>chr5B_35
----------------------------------GTTTTTGGAACGGACGGGAAACTCAAGCTTGACATAAAGAAATATC
TCACTTCGCTGAGATATTTTGCTTCAATTCTTACCAGAAACTCAGACATGAAGTACAGAAGATGCATCGTGTGTTAGCCA
GTGC-AACGTTTTCTCTGAAGTCTGAACTTCACCTGCCCATGCATACTGAAAGTTTTCTCTGAACCTCAACGTTCCCGCT
GCTGCTGCACCTCACAAAACGTTCCGATCTCTGGCGCGCCCCGCCATCGGC------GGCATAAACCTTGCTCAGATTCT
TCGATTCCCCGGATCAAATACTACGTCCGGGTGGTGCAG--------CGAACCTGGACTGCACAACCATGCGAGCACGGG
GCGCGGTGAGCACGTACGTGAGGGCGACGGTCCGCATCGCCGGCCGCTGCACTTGCACCCGCCCCCGGG-CAGTCAGTGG
TCACCGCGCGCGCGCAGCATCCTGGCAGCGGCATCTCTCTCCGGATCCGCCCGCGCGCGGAATCAATCGTACGCGCGAGG
ATATCC-----CCTCTCCACCGCGCGCGCGACGGCAGCCTCACGTTCATTAGCTTGGCCTCCGATCGCGCGTCGCGCCGC
GCCGTGCGTCACATGGCAAATGCACGGCACGGCATGGGCCTGCGCCGCAACGGACAAAGCCGATGAGCTGTGGCCGCTCG
CCCGCCACTCGGCGGCACCCAAACAAAACACCGGCCCGAGGAGGCGCCTACCATTCGGCCCCGCGCGCAGTTTCCTCCAC
TTTTCCCACTGGCAG-------CAGCTCGCGAGTGCCG---GCCGATT---GGTGCCTTCCTTCACACCTGCGAGTTGTA
TAAGTAGAGCCGGCAACTCAGAGTTAAAGGAACACCCACTCAT---------CCAAGCAGTGAAAGAGAAGAGGCTAATC
AAG-CTCAACAGCCTTCTTTTCCAGAGAGTGTGCTGTGTACGTAGCAGAGCGAAGAGTTAGAG-----------------
-------CCATGGCTGGGGTGGTCGGCGTCTGGTTCGCCAAGTTCGGCCGGGAGGCGGCGCCGGCGGTAGAGGCAGAGGC
CGAGGTCGTCGGACGGCGACACCAGGGCGACGGCCTGCTCGAGGTGGAGGCCGTGAAGACG------GTGCAGATCCAGG
AGAGGAGGAGGAGGAACAGCGCCGTCCTCGCCAACTCCGAGGACACGGTGTGCATGCTCATGGACCGCTTCGCCCCGGCC
TGATGCGCCGGTGAACCGGCGGTGTCCGTACGTACGTGTAAATTCCAGGGCACGTA----CGTAGGGGCGCGGGCACAAG
GGAGGAGCCATACCTTGATGTGC---------GGGTTCCTCTTGTACATAAGCTCTTTTTCATCGCTAATCGAGTGATAG
TA--------GTAGTAGTGCTCATGCCTCCCGTTAAAAAAAAG---ATAAATAAATAAAGCGCCCAGTCGAATCAACTGT
ATCATATCATGTACTCCTATGTAGTATGACTGTATCCTTTGAATGGATTCGTTTGGTTTCTATGGCATCTCTGTTGCTGC
TGCTGCTTTTTCTTAGTTGGTGTTGGTGCTGCTTTTGGTGAT--------------------------------------
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ACATTTGCTATTGTGGTTCTGCTCAATCTTCTTCCATTTCC-----TTTTAGAAAAGTGCGGAGTTTACAGTTCTTGCAG
CATTTTGTCAAGAGCAGTTTATTGACACCTGGCATAATAATCCAATCTATGTTTTCCGTTGTTGAACTACTCACTAAAAT
TGGGGGAAATGTTAATTGGCCAAATGATAAATAAGTACTGCACGAGATGCTCCAATGAC---------------------
--------------------------------ATAGAAGATACCACGAGGATTTGGCAACACATCGCCATCATCCCCACC
CCCACCTTCGATGATCTATAGGATTGTGTATTACCCATGGAGTCGAACACTCTACCTGGACTTACATCCTACTGAAAATG
GCTATTCTTTGAAAGATATGGGATGCACGAAGCGCCACGACTTTTAGGGGCGAGGACATCCATACTGCGACAACCTTCAT
CTTTGGCATCACCGCCTCTCCAAACAAGACGATAAGGTGGTTGTTTTCTCGTAGCAACTTTACCTTTCTTCGTGCGTGAA
CATGCCCTTGTAATTCACCTTGCTTCTCCAAAGAGTGGTGACGTGTTAACTTGG-TTGTGT--------AGTGCGGAAGT
GCCACTCTTAAAAAATCCA------
>chr5A_198
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-------------------------------------CCATGCATACTGAACGTTTTCTCTGAACCTCAACGTTCCAGTT
GCTCCTGCACCTCGCAAAACGTTC-GACCTCTGGCGCGGCCCGCGATCCGGA------GCATAAACCTTGCTCAGATTCT
TCGATTCCCCGGATCAAATGCTACGTCCGGGTGGTGCGG--------CGAACCTGGATGGCAGAACCATGCGGGCACGGG
GCGCGGTGAGCACGTACGTGAGGGCGATGGTCCGCGTCGCCGGCCGCTGCACTTGCACCCGCCCCAGGG-CAGTCAATAG
TCAC--CGCGCGCGCAGCATCCTGGCAGCGGCATCTCTCCCCGGATCCGCCCGCGCGCCGAATCAATGGTACGCGCGAGG
ATATCCCCTCCCCTCTCCACCGCGCGCGCGACGGCAGCCTCACGTTCATTAGCTTGGCCTCCGATCGCGCGTCGCGCCGC
GCCGTGCGTCACATGGCAAATGCACGGCACGGCATGGGCCTGCGCCCCAACGGACAAAGCCGATGAGCTGTGGCCGCTCG
CCCGCCACTCGGCGGCACCCAAACAAAACACCGGCCCGAGGAGGCGCCTACCGTTCCGCCCCGCGCGCAGTTTCCTCCAC
TTTTCCCACCGGCAGTGGCAGGCAGCTCGCGAGTGCAT---GCCAATAGCCGGTGCCTTCCTTCACACCTGCGAGCTGTA
TAAGTAGAGCCGGGCACCCAGAGTTAAAGGAACGCCCACTCAT---------CCAAGCAGTGAAAGAGAAGAAGCTAATC
AAG-CTCAACAGCCTTCTTTTCCATCGAGTGTGTG-----CGTAGCAGACCCAAGAGTTAGAGAATCCAAGAAGAGTGTG
GACCTAGCCATGGCTGGGGTGGTCGGCGTCTGGTTCGCCAAGTTCGGCCGGGAGGCGGCGCCGGCGGCAGAGGCAGAGGC
CGAGGTCGTCGGCCGGCGACACCAGGGCGACGGCCTGCTCGAGGTGGAGGCCGTGAAGAAGGGCGGCGTGCAGATCCAGG
AGAGGAGGAGGAGGACCAGCGCCGTCCTCGCCAACTCCGAGGACACGGTGTGCATGCTCATGGACCGCTTCGCCCCGGCC
TGATGCGCCGGTGAACCGGCGGTGTCCGTACGTACGTGTAAATTCCAGGGCACGTACGTCCGTAGGGGCGCGGGCACAAG
GGAGGAATCTATACCTTGTGCTGTGA---------------TTGTACATAAGCTTTTTTTCATCGCTAATCGAGTGATCG
TAGTAGTACTGTAGTAGTGCTCATGCCTTCCGTTAAAAAAAAGG--ATAAATAAATTATGCGGCCAGTTGAATCAACTGT
ATCATATCATGTGCTCCTAT---GTATGACTGTATCCTTTGAATGGATT-GTTTGGTTTCTATGGCATCTCTGTTGCTGC
TGCTGCTTTTTCTTAGTTGGTGTTGGTGCTGCTTTTGGTGATTGTTCGACTATGTATAGCTTCTGTACCTATGTACGTAT
ATGGTACATATTGTAACACAACCATTATATATAATGAGATAAGCCACCCCTAGAGGGTTGTGCTGGTTCCCCAAAACTTA
TTGTCTTACATGGTATCAGAGCAACCAGGCGGCTGTTTCATATAAACCTCTTCCTCCAAAAATCCATGTAGAAAAGCATT
CTGCACATCAAGTTGACGAAGTGACCAACCACGAGAAACAGCAATGGAGAGAAGAAGCCGAATAGTGGTAGGCTTGACGA
CAGGACTGAAGGTGTCCTCATAGTCAAGACCATGACGCTGCCGAAAACCGCGAGCAACAAGTCGCGCTTTGTAACGCTTA
ATAGATCCATTTTGAGTCAATAACATTTACCCGTGGTGGTGGAGGAACGAGAGTCCATGTCTTGTTACGAAGAAGAGCAT
GAAACTCCTGCTCCATAGCCTCTCCGTCACAGTGGCATGCTCGTCTTGGTCACCCGGCCACACCTATTGTCCGTCATATT
TTGCGTCGTCATGAGCTTCCTAGTTTGTCTAGTCATAAAGATGTAGCAGTGTGTGATGCTTGTCAGCAGGGGAAGAGTCA
TCAACTTCCTTTTTCGGAGTCCAGTCGTGAGGTGAAACATCCTTTAGAACTTGTGTTTTCAGATGTATGGGGTCCTGCTC
AGACTTCTGTCAGTGGTCATAATTACTATATCAGTTTCGTTGATGCTTATAGTCGCTTTACCTGGCTTTACCTTATTAAA
CGCAAATCTGATGTGTTTGATATTTTTGTTCAGTTTCAAAAACATGTTGAACGTCTTTTCAAGCACAAAATTGTTCATGT
CCAGTCAGACTGGGGGGGGGGGGCGAGTATCGCAACCTCAACTCTTTCTTTCAGTCGCTTGGGATAGCTCATCGTTTAGC
ATGTCCACATACACATCAGCAGAATGGTTCAGTCGAACGTAAGCATCGTCATATTGTTGAAGCTGGTCTTACTCTTTTGG
CCCATGCATCTGTTCCGTTTCGGTTTTGGAGTGATGCTTTCACCACTGCATGCTTTCTCATCAACCGTACTCCTACTCGT
GTTTTAAACATGAAGACTCCCATTGAGGTTCTCCTTAATGAACAACCTGATTATACCTTTCTCAAGGTATTTGGGTGTGC
TTGCTGGCCGCATCTTCGTCCATATGACAAGCGCAAGCTTGAGTTTCGTTCTAAGAAGTGTGTTTTTCTTGGCTATAGCT
CTCTTCATAAAGGTTACAAATGTCTTCATGTTCCCACTAATCGTGTCTATATATCTCGGGACGTCGTGTTTGATGAGCAT
GTTTTTCCCTTTGCCAACCTTCCTGTGTCCACTGTCGAACCACCATCCCTGCATTCATCCTCTGTTGCTTCTGACCAATT
TGATGATGTTGCATACTCTCCTTTGCTGTTACCTAACCATGGTGCAGGAACCGGACGTGAAGCTCGTTTGGAGCTGTTGG
AGGATTCACCATCATCATCGTCGTCTTCTGGTGGGCACGTCGATCGCCCTATGTTGCATGGCATCGATTCGCGTGCCCAT
GCATGGTCACCCGACGAGCCCGTCGCGCCGAGCATCTCCACTGCTCGGTCCGTTTCGCTAGCGGCCGCCGAGTCACCCGC
GGCTCGGCCCGTCACGCCGTCTTCGCCTGCGGCTCGGCCCGTCACGCCGTCTTCGCCCGCGGCTCGGGTCCTCACGTCGC
CTTCATCAGCGGATCGGCCCGCGACACCGGCCGCGCCACGGCCCACTATGCCGAGCTCGCCATCGGCCCGGTCTGTGATG
CCGGAGTCGCCAGCTGCTTTGTCTGCTCTGCCGGTTTCGCCGGTGGGAAACAGCCGCCTGGTTTCTCTGATCCTGATCGT
CCTGACTATATCTGTCGTCTTTCCAAAGCACTATATGGTTTGAAGCAAGCTCCTCGTGCCTGGCATGCCCGCCTTGCCTC
TGCCCTTCGTGCTCATGGGTTTGTGCCGTCTACTGCTGACACTTCGTTATTTCTTCTACAGAAGCCAGAAGTCACTATGT
ATCTTTTGGTATATGTCGATGATATTATCCTTGTCAGCTCTTCTCAGTATGCTGCTGATGCTCTTGTCTGCTCTCTTGGT
GCTGATCTTGCGGTCAAAGATCTTGGGAAGCTTCACTACTTTCTTGGAGTTGAGGTCACTTCTCGTGCTACTGGTCTTGT
CCTTACGCAGAAGAAGTACTCCTTGGAGTTGTTACAGAGAGCTGGCATGCTGAAGTGCAAACCGACCACCACACCCATGT
CGTCTACCGACAAGATAACAGCTGTTGATGGTGAGCTTTTGTCTCCTGCGGATGCCACAGAGTACAGGAGCATTGTTGGT
GGACTTCAGTACTTGACGATCACGAGACCAGATATCTCTTATGCTGTTAACAGAGTTTGTCAGTATCTTCAGGCTCCCAG
AGATACTCATTGGGCTGCTGTTAAACGCATTCTTCGTTATGTTCAGTTCACCCTGACATTTGGTATGCATATTCGGCCGA
CTTCCTCTCGGGTCCTTTCGGCCTTCTCTGATGCAGATTGGGCTGGTAGCCCAGATGACAGGCGATCCACGGGGGGTTAT
GCAGTATTCTTTGGCTCTAATTTGATCGCCTGGAGTGCTCGGAAACAGGCTACTGTGTCACGTAGCAGTACTGAAGCTGA
GTACAAGGTTGTGGCTAATGCTACTGCAGAGATTATTTGGGTGCAGTCTTTGCTTCAGGAGTTGGGTTTGTCTCAACCAC
AGCCTCCTATTCTTTGGTGTGATAACATCGGTGCTACATACCTTTCTGCAAATCCAGTATTTCATGCCCGAATGAAACAC
ATTGAAGTTGACTATCACTTTGTACGGGAACGTGTATCACAGAAGCAACTCCAGATCAAGTTTATCTCATCTAAGGATCA
ACTTGCAGACATCTTCACTAAGCCTTTACCGCTGCCACAGTTTGAGGCTTGTAGGCGCAATCTTACCCTTCTCAGTTCTT
TAGAAAGTGGCTAAGATTGAGGGAGGGTGTTAGACTATGTATAGCTTCTGTACCTATGTATGTATATGGTACATATTGTA
ACACAACCATTATATATAATGAGATAAGCCACCCCTAGAGGGTTGTGCTGGTTCCCCAAAACTTATTGTCTTACAGTGAT
ACATTTGCTATTGTGGTTCTGCTCAATCTTCTTCCATTTCTTTTTTTTTTAGAAAAACGGGGAGTTTACAGTTCTTGCAG
CATTTTGTCAAGGGCTGTTTATTGACAGCTGGCATG---ATCCAACCTATGTTTTCCGTTGCTGAACTACTCACTAAAAT
TGGGGAAAGTGTTTAGCAGCCAAATGATAAATAAGTACTGCACGAGATGCTCCAACGAC---------------------
--------------------------------ATAGAAGATACCATGAGGATTTGGCAACACATCGGCATCATCCCCACC
CCCACCTTCGGTGATCTATAGGACTGTGTATTGCCCTTGGAGTCGAACACTCTACTTTGAGTTACATCCTACTGGAAATG
GCTATTCTTTGAAAGATCTGAGATGCACGAAATG-CAAGACTTTTAGGGACGGGGACATCCATACTGCGACGACCTTCAT
CTTTGGTATCACCGTCTCTCCAAACAACACGACAAGGTGGTTGTTTTCTCATGGTAACTTTACCTTTCTTCGTGAGTGTT
CATGCCCTTGTAATTCAGTTTGCTTATCCAGAGAGTGGCGATGTGTTAACTTAGGTTGTGTTTGGCACAAGAGCGGAAGT
GCCACTCTTAAAGAAATCCACCAAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S---------S-------------------
--SS---S----------------------------------S------------------S------------------
----S------------S-S------------------------------------------------------------
---------------------------------------S-----SS----SSSSSS-------------S---------
-----S-----------------------S---------SSSSSSSS---------------------------------
---------------------------------------------------------------------S---S------
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-------------------------------------------------------------------------S------
----------------------------S-----------------------------------S---------------
---------------------------------------S-S--SS-S--------------------------------
----------------------------------SSS-SSS------S--------------------------------
------------------------S---------S----S--SSSSSSSSSS-----------------S-----SSSSS
SSSS-----S----------------------------------------------------------------------
--------S-----------------------------S-----------------------------------S-----
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-----------------------------S--------------------------------------------------
------------S------------SSSSSSS------------------------------------------------
-----------------------------S-----------S-SSS----------------------------------
----------------S---------------------------------------------------------------
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------------------S--S--------S------------S-----S----SS------------S-S---------
------------------------S-------------------------------------------------------
-------------------------------------SS--------------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------------
-S---------S----S-------------------S---------------------S-----S---------------
-------------S-------------------------------S-----------------------S----------
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S----------------------------------------------------S--------------------------
--------------------S----
>forward_165
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-----------------------------------------------------------------ATCGTGTGTTAGCCA
GTGCA---------------------------------------------------------------------------
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>reverse_4905
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------------------------TCAGCTGGCATGATCCAACC------------------------------------
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