>input_sequence_86493
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-------------ATGGCACGCACCACCGGCTTGGGGCTCTTCATCTGCGCCGTGCTGCTGCTCGCTGCCGCCGTGCCCT
TGGAGTCGGCTAGGGTCTTGAGAGAAGCGCCGTCCGCCACTGGTGGCGCTGGCGTCACTGAGGTATCCATGAAGGTGCCC
GGCGAGGGGCAGAGGCAGGTCGGCACGGCGGCAGAGTCCAAGCGCCTGAGCCCCGGGGGATCGGACCCTCAGCACCATTA
G-------------------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G328000
AGGGTAGGGTAGGGCCCCAAGTAGTCGAAGGTGGTGCTGGTGTGGAGGCTGTGGAGGAACCCATTGAGTATGGAAGGTTA
TTGCTGGAATTAAAAGAGGTTATCGCTATTTACGGCTTGATAGCTGAAG-------------------------------
-------CCACAAAAGCCAAAGCAATCTCGAGCAGCAATGGCTTTTCACATGGTTTGTCAGTCCTATTGGCTCAACCATA
CACCTACGGCCCTTCGCTTCGTTGTGACAACCGACGCCTAGCCTACCTTTCTCCTCCAATGTTGGACTCCCCTTTTCTTC
CATTCGTTGGATCATCAGCAAAAGGTTGAATGCGTGTATCGAATCATGGACGAGATTTTTTTTGAC-----GGAGATTGA
TATATCTACTCAAAAGTTGGGAGTAATTTGCTGAGTTCGATCG--------TCGTATCCGACCTATGGAGCTGCAAAGGC
GCCTGAACCAAAAAACACCGATAACCGTCCAAGCCGGCCTTTAGGCAGGTGATATCTGATAGGGAGGGGGGAGGCGCATG
CGTCCAAGCCGGCCGGTTGTGGTTGCGCCTTTGCTCCGTGCACGTACTATCGCCGGGCATACACACACATTGGTCGCCTC
TGATTGATCGAGAAGACAATGTGCGAGTGGTTGAAGCGCATGCACTCAGGAGATCGGCCTGGCTATTGGCCGGGTGCCAC
AATGGAGGCATTTTTTAGTGAACTTTTTGCTAAATGAGAACGGCCGCCGATGCAACTGTCTAACCGGTATATCCCACCGG
TGT-AGTGATTTATCAAAATCTCTTACGTGGAGTCCATAACG-CCCCGTGTATATAAGTCGGTCCATAGCTTAGGCATGA
TTCGTACTTCCTAGCTAGCTCCAGAACCCATTGCCTTGCAGAGTTGCAGTGTCGTTGCATCGACGACCCTGCGTGCACCA
GTTAGCTCATCTTTGCACGAAAGATAGGGGCATACATTGTCGCTGCGTCTCACAGCGGCCTCTGATCAAGCGCCAGCCTC
CCCGAAGCAATCGATGGCACGCACCACCGGCTTGGGGCTCTTCATCTGCGCCGTGCTGCTGCTCGCTGCCGCCGTGCCCT
TGGAGTCGGCTAGGGTCTTGAGAGAAGCGCCGTCCGCCACTGGTGGCGCTGGCGTCACTGAGGTATCCATGAAGGTGCCC
GGCGAGGGGCAGAGGCAGGTCGGCACGGCGGCAGAGTCCAAGCGCCTGAGCCCCGGGGGATCGGACCCTCAGCACCATTA
GGTGGCCATTGTGTTGAGCTCTCCCGTGCTCGCCGCGTCGAACGCCGTAGT-AGGAAGAAACAGAGGATGACGAGGTTGC
TCTTGGCGATACGAATAATTAAGGTTGACGAGGATAATGTTTTCTTACTGCCCATTCGTTCAGTGCTGTTACTGTGTGCT
TTCACTTTGCCTCTTAGCCTCTTAGGTGAGGGTGCTTTCCTACTACTATATATACTTACTATA------------TGTGT
GTTTTATAATGTCATCATGTCCACAGAAATATATTGGACCATGCACGTTTGGTGTGCACCCTTTCCGATCTACTGTCTAA
TTAACTAACCTCTGCATTGCCAACCGAACTTGCTTTCTAGCAGCCGCGGAAAGGGAGTGTCTGGTACTTTAGTTGC--TA
TAGCAGCATGGGCTTAAGTAACAACTCATTTCCGCTGTTTGGCATGATAGGCTAGCGCTACGCTAGCTAATACACAAAGT
CATCCACTACGTACCAACCTCTGTTCT-TAATTCCAAGCGATGTATTTGCTGCAAGGCATTCTTATAGCCCGTAGTGCAT
CTAGCGGCTGCTCTGCATGCACCAAAAACATCAACTTACCAGTGTAAACTCCCA-GCACACTCTGCTCCAAGAGTTGTGT
TATCACATGCATGGAAATACCAGCCGTGATGAGATTGATCAAGGCGTGTCTGCTGGGGCGGCAGCTATGATCTGAC-CCC
AAGATCTGGCCATGCCTAGCTCCGGAGCTAGCACCGGCCAAGGAGGAAACGGCATGATGACTTGATCGACACAGCTTCGC
AAAGCGCGGTGAGTGAGGCAAGGGGGTTGAATCCCTCGTGCCTCGAGGGGAAGTTGGAGATCGTGATATCTGATGGATGG
GGAAGGAGAAGACCGAGGTGGCTGGCTTGTGGCGGCGATGATACGACGTGGAGATGGTGATATCTTGCGTAAGAAGG-GA
TGCATGAGACTGCTCAAATGCAGCTGGCGGGAGAAAGAGAAGCGGGTGCATCACATTCTC
>chr3D_1
AGGGTAGGGTAGGGCCCCAGGTAGTCGAAGGTGGTGCTGGTGTGGAGGGTGTGGAGGAACCCATTGAGTGTGGAAGGTTA
ATGCTGGAATTAAAAGAGGTTATCGCTATTTACGGCTTGATAGCTGACACCGGCTAAGGCCACACCAACGTTGGTTTACT
TGTGAGTCCACAAAAGCCAAAGCAATCTCGAGCAGCAATGGCTTTTCACATGGTTTGCCAGTCCTATTGGCTCAACCATA
CACCTACGTCCCTTCGCTTCGTTGTGACAACCGACGCCTAGCCTACCTTTCTCCTCCAATGTTGGACTCCCCTTTTCTTC
CATTCGTTGTATCATCAGCAAAAGGTTGAATGCGTGTATCGAATCATGGATGAGATAACTAGCATCCAGAAGGAGATTGA
TATATCTACTC-AAAGTTGGGAGTAATTTGCTGAGTTCGATCGTCGT--ACTCGTATCCGACCTATGGAGCTGCAAAGGC
GCCTGAACCGAAAGACAACGATAACCGTCCAAGTCGGCCTTTAGGCAGGTGATATCTGATAGGGAGGGGGGAGGCGCATG
CGTCCAAGCCGGCCGGTTGTGGTTGCGCCTTTGCTCCGTGCACGTACTATCGCCGGGCATACTCACACATTGGTCGCCTC
TGATTGATCGAGAAGACAATGTGCGAGTGGTTGAAGCGCATGCACTCAGGAGATCGGCCCGGTTATTGGCCGGGTGCCCC
AATGGAGGCATTCTTTAGTGAACTTTTTGCTAAATGAAAACGGCCGCCGATGCAACTGTCTAACCGGTCTATCCCACCGG
CCGGAGTGATTCATCAAAA--TCTTACGTGGAGTCCATAACG-CCCCGTGTATATAAGTCGGTCGATAGCTTAGGCATGA
TTCGTACTTCCTAGCTAGCTCCAGAGTCCATTGCC--------TTGCGGTGCCGTTGCATCGACGACCCTGCGTGCATCG
GTTAGCTCATCTTTGCACGAAAGATTGGGGCATACATTGTCGCTGCGGCTCACCACAGCCTCCGATCAAGCGCCCGCCTC
TCCGAAGCAATCGATGGCACGCACCACCAGCCTGGGGCTCTTCATCTGCGCCGTGCTGCTGCTCGCTGCCGCCGTGCCCT
CGGAGTCAGCTCGGGTCTTGAGAGAAGCGCCGTCCGCCACTGATGGCGCTGGCGTCACCGAGGTATCCATGAAGGTGCCT
GGCGAGGGGCAGAGGCAGGTCGGGACAGCGGCAGAGTCCAAGCGCCTGAGCCCCGGAGGATCGGACCCTCAGCACCATTA
GGTGGCCACTGTGTTGAGCTCTCCCGTGCTCGCCGTGTCGAAGGCTGTAGGAAGGAACAAACAAAGGTTGGCGAGGGTGT
TTTTTGCGAC---AATAATTAAGGTTGACGAGGATAATGTTTTCGTACTGCCCATTCGTTCGGTGCTGCTACTGTATGCT
TTCACTTTGT--------CTCTTAGGTGAGGGCGCTTTCCTACTATATACTACTAGTACTATA------------TATGT
GTTCTATAATGTCATCATGTCCACAGAAATGTATTGGACCATGCACGTTTGGTGTGCATCCTTTCCGATCTGCTGTCTAA
TTAACTAACCTCTGCATTGCCAACTGAACTTGCTTTCTAGCAACCGCGGAAAGGGAGTGTCTGGTACTTTAGTTGC--TA
TAGCAGCATGGGCTTAAGTAACGACTCATGCCCGCTGTTTGGCATGATAGGCTAGCGCTATGGTATCTAATACACAAAGT
CATCCACTACGTACCAACCTCTGTTCTCTAAGTCCATGCGATGTATTTGCTGTAAGGCAGCCTTGTAGCCTGTAGTGCAT
CCAGCGCCTGCTCTGCGTGCGCCAAAAACACCAACTTACGAGTGTAAACTCTAA-GCACACTCTGCTCCAAGAGTTGAGC
TATCACATGCATGGAAATACCAGCCGAGATGAGATTGATCAAGGCGTGTCTGCTGGGGCGGCAGCTATGATCTGACTCCC
AAGATCTGGCCATGCCTAGCTCCATAGCTCGCACCGGCCAAGGAGGCAACGACACGATGACT---TCGATACAGCTTCAC
AAAATACGGTGAGTGAGGCAAGGGGGTTGAATCCCTCATGCCTCGAGGGGAAGCTGGAGATCGTGATATCTGATGGATGG
GGAAGGAGAAGACCGAGGTGGCTGGCTTGTGGCGGCGACGATACGACGTGGAGATGGTGCTATCTTGTGTAAGAAGGGGA
TGCATGAGACGGCTCAAATGCAGCTGCCGGGAGAAAGATAAAC-GATGCATCACATTCTC
>chr3A_1
AGGGTAGGGTAGGGCCCCAAGTAGTCGAAGGTGGTGCTGGTGTGGAGGGTGTGGAGGAACCCATTGAGTGTGGAAGGTTA
----------------------TCGCTGTTTACGGCTTGATAGCTGACACCGGCGAAGGCCATATCAACGTTGGTTTA-T
TGTGAGTCCACAAAAGCCAAAGCAATCTCGAGCAGCAATGGCTTTTCACATGGTTTGCCAGTCCTATTGGCTCAACCATA
CA----------------------------------CCTAGCCTACCTTTCTCCTCCAGTGTTGGGCTCCCCTTTTCTTC
CATTCATTGGATCATCCGCAAAAGGTTGAATGCGTGTATCGAATCATGGACGAGATAACTAGCATCCAGAAGGAGATTGA
TATATCTACTCAAAAGTTGGGAGTAATTTGATGAGTTCGATCGTCGTATACTCGTATCCGACCTATGGAGCTGCAAAGGC
GCCTGAACCAAAAAACACCGATAACCGTCCAAGCCAGCCTTTAGGCAGGTGATGTCTGATAGGGAGGGGGGAGGCGCATG
CGTCCAAGCCGGTCGGTTGTGGTTGCGCCTTTGCTCCGCGCACGTACTATCGCCGGGCATACCTACACATTGGTCGCCTC
TGATTGATCGAGAAGACGATGTGCGAGTGGTTGAAGCGCATGCACTCAGGAGATCGGCCTGGCTATTGGCCGGGTGCCCC
AATGGAGGCATTTTTTAGTGAACTTTTTGCTAGATAAAAACGGCCGCCGATGCAACCGTCTAACCGGTCCATCCCACCGG
TGGAGTGTT----TCAAAATCTCTTACGTGGAGTCCATAATGCCCCCGTGTATATAAGTCGGTCCATAGCTTAGGCATGA
TTCGTACTTCCTAGCTAGCTCCAGAGCCCATTGCC--------TTGCAGTGTCGTTGCATCAACGATCCTGC--------
-----CTCATCTTTGCACGAAAGATAGGGGCATACATTGTCGCTGCAGCTCACCAG---------TCAAGCGCCCGCCTC
TCCGAAGCAATAGATGGCACGCACCACCGGCCTGGGGCTCTTCATCTGCGCCGTGCTGCTGCTCGCTGCCGCCGTGCCCT
TGGAGTCGGCTCGGGTCTTGAGAGAAGCACCGTCCGCCACTGGTGGCACTGGTGTCACCGAGGTATCCATGAAGGTGCCC
GACGAGGGGCAGAGGCAGGTCGGCAAGGCGGCGGAGTCCAAGCGCCTGAGCCCCGGAGGATCGGACCCTCAACACCATTA
GGTGGCCATTGTGTTGAGCTCTCCCGTGCTCGCCGTGTCGAAGGCTGTAGGAAGGAACAAACAAAGGTTGGCGAGGGTGT
TTTTTGGGAC---AATAATTAAGGTTGACGAGGATAATGTTATCGTACTGCCCATTCGTTCGGTGCGGTTACTGTATGCT
TTCACTTTGT--------CTTTTAGGTGAGGGCGCTTTCCTACTATATACTGTACTTACTATATACTGTACTCTGTATGT
GTTTTATAATGTCATCATGTCCACAGAAATATATTGGACCATGCACGTTTGGTGTGCATCCTTTCCGATCTGCTGTCTAA
TTAACTAACCTCTGCATTGCCAACTGAACTTGCTTTCTAGCAACCGCGGAAAGGGAGTGTCTGGTACTTTAGTTGCTATA
TAGCAGCATGGGCTTAAGTAACGACTCATGCCCGCCGTTTGGCATGATAGGCTAGTGCTACGATATCTAATACACAAAGT
CATCCACTACGGACCAACCTCTGTTCTCTAATTCTATGCGATGTATTTGCTGTAAGGCAGCCTTATGGCCTGTAGTGCAT
CCAGCGCCTGCTCTGCATGCGCCAAAAACACCAACTTACGAGTGTAAACTCTAAAGCACACTCTGCTCCAAGAGTTGAGC
TATCACATGCATAGAAATACCAACCGAGATGAGATTGATCAAGGCGTGTCTGCTGGGGCGGCAGCTATGATCTGACT-CC
AAGATCTGGCCATGCCTAGCTCGGTAGCTCGCACCGGCCAAGGAGGAAACGGCACGATGGCTTGATCGACACAGCTTCGC
AAAGCACGGTGAGTGAAGCAAGGGTGTTGAATCCCTCATGCCTCGAGGGGAAGCTGGAGATCGTGATATCTGATGGATGG
A-AAGGAGAAGACCGAGGTGGCTGGCTTGTGGCGGCGACGATACGTCGTGGAGATGGAGATATCTTGTGTAAGAAGGGGA
TGCACGAGACGGCTCAAATGCAGCTGGTGGGAGAAAGAGAAATGGATGCATCACATTCTC
>SNPs
------------------------------------------------S--------------------S----------
S----------------------------------------------SS-------------------------------
---------------------------------------------------------S----------------------
--------S-----------------------------------------------------------------------
--------------------------------------------------------SSS-SSSSS---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
------------------------------------------------------------------------------S-
-------------------------------------S------------------------------S-----------
--S--------S--------------------------------------------------------------------
-------------------------S---------SSSSSSSS----------------------------------S-S
-----------------------------------------------S-----SS-S-----S-----------S-----
S------------------------------S------------------------------------------------
-----------S----------------------------------------------S---------------------
--------------------------------------------------------S-----------------------
-----------------------------------S------S--S----S------S-----S---S--S-----S--S
-S--S----SSSS-------------------------------S----------------S-------------S----
---------SSSSSSSSS--------------S------------SSSSS--------------------------S---
----------------------------------------------------------S------------S--------
------------------------S-----------------S-------------------------------------
----------------------S------SS-------------------------------S--S--------------
------------------------------------S---------------S------SS---------S---------
-S----S-------------S---------S--------S-----------SS------------------------S-S
--------------------------S-----------------------------------------------------
------------------------S----S------------------------S-------------------------
-----S-------------------------------S---------------S--------------------------
--------------------------------------S----------------------------S------------
----------S------------------------------S---S--------------
>forward_922
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----------------------AGAACCCATTGCCTTGCAGA--------------------------------------
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>reverse_1831
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----------------------------------------------------------------------CGTAGTGCAT
CTAGCGGCTG----------------------------------------------------------------------
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