>input_sequence_86485
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-----------------------------------------------------------------------ATGGAACGC
CTCTCTCGGCGTCAGCGGTTCACACCCTCTCGACATCGGGCTGCCGCCCCTCTGCGGCGACGAGAACCTCGACGTCGGCC
TGCCGCTCCTCCTCGGGGACAGGTGCACCTCCTCCAGCGCCCGGTGCTGGAGCTCCGGCGGGTAGTCCCTGACGCAAATG
ATCCGGGGTCCGGCGCCGGTGGTCCACTTGAAGGACCCTTGCTTCCCCAGCTGATATGA---------------------
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>chr2B_1_TraesCS2B01G180100
TTGATTAGTCAGCGTTTCAGCTGATCTTGTCGATATAAATCCGCCTTCAAAAAAAAAGTACGGCTGCTTTGCTTGGGCCA
TTGGCGTCACTGCTGTGGCCCATGGGCCTTTTGCTACTGCGGTGGACCGCCACTTCTCCTTGAAAGGAGGCAGCGGAAGA
AGCAAAACGAGGCGGAGCCAGACGTTTCGATTAGTCCCACCTCGCTTGGGTA---GAGTGAGTGAGCGGGGAGCGAGGGC
TATATAAGAGCGGGTGGTGCGAACCGTGAAAGGCACGCAGCTGCGTGGTGAGCACAGAGCGAACTATTCTTTCGCCTTTT
ACTAAAG-AATACCGTGTGCACGCTACACTAAGCAGCATACCCTAATTTTTTAAGGGTGTCTTTCTCTTTGTGAGAAGGC
CCCACCAATCCTGAAGTTAAAATTCTTTTAGTTGCACATGTGGACAAAATACGATGATCTTGAAAGTTGCC---------
-----TTCTCTGTTTGAAGGCCCTGCAAATTAGGAATTTCAAAACTTGCAGCATTTGCTAATTGCTAATTTTTTAAGGGT
GTTGTCTCTGTGAGAAGAAGGCCCGCACAATCCTTTTTTTTTTGCGCATAATGCCCGTCCAATCCTTAATTTAACTTTTG
ATGAATTAGTAGAATGATAATCATATTCAACAAGTTTTGGCTGGGCATTTCTATGAGATAAAAACCTTGGCATTCTAAAG
TTCCATTCCTTCTGATGGGAATGCCTTAAAAGTTAAAACTCCAG---------GTTCTGAATTTGGAAATTGCATTCTCT
CGGAAGGGGAATAAAAGACCAAAGAATGAAAGAATTTGTATTGATATCTGTACTTGTGTCCAATTTGAACATCACGTATA
AATACATCACTACAAGATCTACACAA--GGAGCACTTCTTTTTTACTCCCA--ATAGGTGACTTTATTCCTCTATCCATA
TGCACAACTGATGAACAAGAATAGCTCATTCATCATAAACTGATCAGTAATCCTTGCTGCAGGTGCGTGGCATGGAACGC
CTCTCTCGGCGTCAGCGGTTCACACCCTCTCGACATCGGGCTGCCGCCCCTCTGCGGCGACGAGAACCTCGACGTCGGCC
TGCCGCTCCTCCTCGGGGACAGGTGCACCTCCTCCAGCGCCCGGTGCTGGAGCTCCGGCGGGTAGTCCCTGACGCAAATG
ATCCGGGGTCCGGCGCCGGTGGTCCACTTGAAGGACCCTTGCTTCCCCAGCTGATATGAGTTGACTCTCCCAATGATCTT
CTCCCTTGGCACCGATGAATGATCATCGTCACTATCTTCCTGATGATCTTCAGGCATGGAATTTGTTGATTTTTCGATGT
TTACAGCGCCTTTCGATGAATCCAGCCTTGTTAATATCTCCGGTTGGCTATGATCTTTGCTTGTTTCTTGGAGTTGGATG
ACATTTTCAGGTGTAGCTTCAGTGACCTGAGGTGCCAGGCAAGGGATGGTTTCTGCAGCAGGAACCATTTCTTCTTCGGG
TTTGTCGGCATCGGTGCACCGCTCAGAAGGGATGCTTCTCAGCCTGCTCCAAAACTCCTCATCCTCTTCAGTTGGGCTCA
TCTACAATCACACAAAAACAACAATTGAG--AATGCAAATTGGATAAACCTATTGTCAGCACA-TTTGGGAACTTTCTCA
TTCTATCCCAATCACCGGTCACCGGCATAGTTGCTCACCTTAACATCGCTGAGATCAACCTTGTTCTCTCTGAGGAAGTC
CTGGAATTCCTGGAAGTTCTCTTCTGTGGGGCGGTAGTGCCCACTGTGAGGCCAGATAGCCTTCAGAACTCCATCTTCAA
CAACTAGTCGCCCCGCAGCAGACGCGGCGCCTCCGGCGAGAAAGCTAGAATGCTGAAATGTGCCCTTTTTCTTCTGCAGA
AAGCAGAGTTTTAGACAATGTTAGATGATGATCCAATACACATAGGTGATAGGTCAAATGCAATGTTGTGTGTTGATAGT
ACTCTAATATGAAGCCTGAACATTACCTGCCCAACATACAGATTCCTGGATGTGCTCAGCACAAAGATCCACTTTGCATC
CCTCGGACCGCCCGACGTATCGAGGATTTGCCTGCTGTTCTTGTACATGAACTTGCCATCCTCAATCACAACCTCATAGT
CCTCTCTCTCTTTCTGCAGGGACAACACATATACAGTTTGAATCATTAGTCTTTCTGAACTCTCATGGACCTGCATTCTA
CTCCAGCTATCCATTTATCCCG
>chr2D_150
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---------------------------------------------------------------------GCAGCAGAGGA
AGCAAAACGAGGCGGAGCCGGCTGTTTTGATTAGTCCCACCTCGCCTGGGCAAGGGAGAGAGAGGGTGGGGAGCC-GGGC
TACATAACAGCGGGTGGTGCGAGCGATTAAAGGTACGCAGCTGCGTGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTT
ACTAAAG-AATACCGTGTGCACGCCACACTAAGCAGCATACCTTAATTTTTGAAGGGTGTCTTC-TCCTTGTGAGAAGGC
CCCACCAATCCTAAATTCAAACTTTGTAATGTGGTACATTTGGACAAAATACAATGATCTTGAAGGGTGTC---------
-----TTTTCTGTTTGAAGGCCCTGCAAATTCTGAATTTCAAAATTTGTAGCATTTGCTAATT-------TTTGAAGGGT
GCCTTCTCTGTGAGAACAAGGCCCCCACAATG--------------------------------CTTAATTTTACTTTTG
ATGAATTAGTAGAATGATAATCATATTCAACAAGTTTTGGCTGGGCATTTCTCTGAGATAAAAACC-------TCTAAAG
TTCCATTCCTTCTGATGAGAATGCCTTAAAA-------CTCCAA---------GTTCTGTAGCTGGAAATTGCAT-CTCT
CGGAAGGGGAACAAAAGACCAAAGAATGAAAGAATTTGTATTGATCTCTGTACTTGTGTCCAATTTGAACATCACGTATA
CATACATCACTACAAGATCTACACAA--GGAGTACTTCTTTTT-ACTCCCA--ATAGGTGACTTTATTCCTCTATCCATA
TGCACAACTGATGAACAAGAATAGCTCGTTCATCATAAACTGATCAGCAATCCTTGCTGCAGATGCGTGGCATGGAACGC
CTCTCTCGGCGTCAGCGGTTCACACCCTCTCGACATCGGGCTGCCGCCCCTCTGCGGCGACGAGAACCTCGACGTCGGCC
TGCCGCTCCTCCTCGGGGACAGGTGCACCTCCTCCAGCGCCCGGTGCTGGAGCTCCGGCGGGTAGTCCCTGACGCAAATG
ATCCGGGGCCCGGCGCCGGTGGTCCACTTGAAGGACCCTTGCTTCCCCAGCTGATATGAGTTGACCCTCCCAATGACCTT
CTCCCTTGGCACCACCGAATGATCATCATCGCTGTCTTCCTCATGATCTTCAGGCATGGAAGTTGTTGAGTTTTCGATGT
TTACGGCGCCTTTCGATGAATCCAGCCTTGTGAATATCTCCGGTTGGCTATGATCTTTGTTTGTTTCTTGGAGTTGGATG
ACATTTTCAGGTGTGGTTTCAGTGACCTGAGGTGCCTGGCAAGGGATGGTTTCTGCAGCAGGAACCATTTCTTCTTCGGG
TTTGTCGGCATCTGTGCACCGCTCAGAAGGGATGCTTCTGAGCCTGCTCCAAAACTCCTCATCCTCTTCAGTTGGGCTCA
TCTGCAATTATACAAAAAGAACAATTGAGAAAATGCAAATTGGATAACTTTATTGTCACCACATTTTGGGAACTTTCTCA
TTCTATCCCAATCATGGGTCAG----ATAGTTGCTTACCTTAACATCGGTGAGATCAACCTTGTTCTCTCTGAGGAAGTC
CTGGAATTCCTGGAAGTTCTCTTCCGTGGGGCGGTAGTGCCCACTGTGAGGCCAGATAGCCTTCAGAACTCCATCTTCGA
CAACTAGTCGCCCCGCAGCAGACGCGGCGCCTCCGGCGAGAAAGCTAGAATGCTGAAATGTGCCCTTTTTCTTCTGCAGA
AAGTAGAGTTTTGGACAAAGTTAGATGATGATCTAGTACACATAGGTAATAGGTCTAATGCAATGTTGTGTGTTGATAGC
ACTCTAGTATGAAGCCTGAACGTTACCTGCCCGACATACAGATTCCTGGATGTGCTCAGCACAAAGATCCACTTTGCGTC
CCTCGGACCGCCGGACGTGTCGAGGATTTGCCTGCTGTTCTTGTACATAAACTTGCCATCCTCAATCACAACCTCATATT
CCTCTCTCTCTTTCTGCAGGCACAACAAAAATTCAGTTTGAATCATTAGTACTCCTGAACTCTCATGGACATGCATTCCA
CTCCAGCTACACATTTATCCC-
>chr2A_170
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---------AGGAGGAGCCAGCCGTTTTGATTAGTCCCACGTCGCCTGGGCAAGGGAGAGAGGGGAA--GGAGCT-GGGC
TACATAAGGGGGCGTAGTGCGAATGGTGAAAGGCACGCAGCTGCATTGTGAGCACAAAGCGAACTAATCTTTC--CTTTT
ACTAAAGAAATACCGTGTGCACGCCACACTAAGCAGCATACCCTAATTTTTTAAGGGTGTCTTT-TCTCTGTGAGAAGGC
CCCACCAATCCTTAATTTCAAATTT----TGTCGCGCATTTTGACAAAATATGGTGATTTTGAAGGTTTTATGTTCTCTT
TGATATGCTCTCTTTGAAGGCCCTGTCATTTCTGGACTTCAATTTTTTTAGCATTTGCTAATT-------TTTGAAGATT
ATA-----------------------------------------------------------------------------
----------------ATAATCATATTCAACAAGTTTTGGCTGGGCACTTCTATGAGAT-AAAACCTTGGCATTCCGAAG
TTCCATTCCTTCCGATGAGATTGCCTTAAAA-------CTCCAAGGCACACCCGTTCTGTACTTGGAAATTGCATTCTCT
CGGAAGTGGAATAAAAAACCAATAAATGAAAGAATTTGTATTGATCTCTGCACTTGTGTCCAATTTGAACATCACGTATA
CATACATCACTACAAGATCTACACGGGGGGAGTACCTCTTTTT-ACTCCATATATAGGTGACTTTATTCCTCTATCCATA
TGCACAACTTATGAACAAGAATAGCTCGTTCATCATAAACTGATCAGTAATCCTTGCTGCAGATGCGTGGCATGGAACGC
CTCTCTCGGCGCCAGGGGTTCACACCCTCTCGACATCGGGCTGCCGCCCCTCTGCGGCGACGAGAACCTCGACGTCGGCC
TGCCGCTCCTCCTCGGCGACAGGTGCACCTCCTCCAGCGCCCGGTGCTGCAGCTCCGGCGGGTAGTCCCTGACGCAAATG
ATCCGGGGTCCGGCGCCGGTGGTCCACTTGAAGGACCCTTGCTTCCCCAGCTGATATGAGTTGGCCCTCCCAATGATCTT
CTCCCTTGGCACCACCGCATGATCATCATCGCTGTCTTCCTCATGATCTTCAGGCATGGAAGTCGTTGATTTTTCGATGT
TTACGGCGCCTTTCGATGAATCCAGCCTTGTGAACATCTCCGGTTGGCTATGATCTTTGCTTGTTTCTTGGAGTTGGATG
ACATTTTCAGGTGTGGTTTCAGTGACCTGAGGTGCCTGGCAAGGGATGGTTTCTGCAGCAGGAACCATTTCTTCTTCGGG
TTTGTCGGCATCGGTGCACCGCTCCGAAGGGATGCTTCTGAGCCTGCTCCAGAACTCCTCATCCTCTTCAGTTGGGCTCA
TCTGCAATCATACAAAAAGAAAACTTGAGAAAATGCAAATTGGATAACTTTATTTTCACCACAGTTAGGGAAGTTTCTCA
TTCTATCCCAATCATCGGTCACAGGCATGGTTGCTCACCTTAACATCGCTGAGATCGACCTTGTTCTCTCTGAGGAAGTC
CTGGAATTCCTGGAAGTTCTCTTCTGTGGGGCGGTAGTGCCCACTGTGAGGCCAGATAGCCTTCAGAACTCCATCTTCGA
CAACGAGTCGCCCCGCAGCAGACGCGGCGCCTCCGGCGAGAAAGCTAGAATGCTGAAATGTGCCCTTTTTCTTCTGCAGA
AAGTAGAGTTTTGGACAAAGTTAGATGAAGTTCCAGTACACATAGGTGACAGGTCTAATGCTATGTTGTGTGTTGATAGT
ACTCTAATATGAAGCCTGAACATTACCTGCCCAACATACAGATTCCTGGATGTGCTCAGCACAAAGATCCACTTTGCGTC
CCTCGGACCGCCGGAGGAGTCGAGGATCTGCCTGCTGTTCTTGTACATGAACTTGCCATCCTCGATCACAACCTCATATT
CCTCTCTCTCTTTCTGCAGGCACAACAAAAATCCAGTTTGAATCATTAGTCCTTCTGAACTCTCATGGACTTGCATTCT-
----------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--S--
---------------------S-----S-----------------S----S-------S---S-S-S-------SS----
--S---------------------S-------------------------------S-----------------------
------------------------S---------------------------------------S---------------
------------S--S--------SS-SSS--S------S------------------------S----S----------
-------------------------------SS-----------S---S--------------SSSSSSS---S------
--SS------------S-------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-------
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-----------------S-------------SSSSSSS-----S---------------S-S------------------
---------------------------------------------S----------------------------------
S-------------------------------S----------S------------------------------------
---------------------------S----------------------------------S-----------------
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-----------------------------------------------------------------S--------------
-------------SSS-----------S--S--S-------S-------------------S------------------
----S--------------------------S------------------------------------------------
--------------S-S-------------------S-------------------------------------------
---------------------------------------S----------------------------------------
---S------S-------S----------------------------SSS--------S---------------------
--------------S-------S---------------------------------------------------------
------------------------------------------------------------------------------S-
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---S--------S-----S----------------S-------------------S------------------------
-----------------------------------------------------------------------------S--
------------S-----S-----------------------------------------------------------S-
--------------------S------S-S--S------------------S------------------S---------
---------SS----------S
>forward_144
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--------------------------------------------GACCGCCACTTCTCCTTGAA----------------
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>reverse_1365
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----AGCGCCTTTCGATGAATCCA--------------------------------------------------------
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