>input_sequence_86482
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------ATGTCGCGGTTCCAGCGAGGCCTG
CGCCCGGTGCTGCAGGTGTTGGGCGCCCCTGCCTCGGCGGGCCCCACGGACCGGTACCGCTTCCTGCTCTCCGACGGCGT
GCACTCCCAGGAGGGGATCCTCGTCCCCTCCCTCGACAGCCTCGTCAGGACCGGCCGGCTCTGCGACGGCACCGTCATAC
GCGTCCTCGACTACGTCTGCAACTCCGTCTGCAGCCGAAGGTGA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>chr1D_1_TraesCS1D01G096500
CATTAAAAACTTTCGCAACTAAAGCCTCCAATGCATAGGTGCTTAACTTGTTGGTGCTAAGCATCCTTCATTTAATGATT
TCGCAACTAAAGTTCTTCATGCATTGGTGGTATTCTTTCATTTAAGTGTTTTGTCTAGGTTCTCGCGCTTGGCATTGTTT
ATTCCTGGGTCACCACACTCATCTCTCTCCTCTTAATTACCTTGCCACATCAGACTTTTTGCCTACATGGCAGCCTTAGC
ACCTGTACAAGATGAAGCATTGAGAGGGGCCTAATACTCTCTCTTCTCTTTAATTGCTCCGTCATATCACTTTTTTACCT
ATGTGACATCCTTAGACTGGTCACAGTGGGGAGTAACTTAGAGTAGTAACATGCATATGTTACTAGTCTATGTTACCACC
TCCACAGTGGGTAGTAACATATGTGTTGTGTTATGCATCACTTTATGTATTAGGTTGTAGACTCATCTTTTCTTGATATG
TGTGATGTTATAGTAACTAGTTATGCTACCACATGCCACTCTTTCTTCATTAATTACATGCCACATCATCTATTTTGCCT
AGATAAGTGTGATGTTATCACCTATGTTACTTTAACTGTGGCTAGTCTTAGCACCGGTACACCTTGAAACACTGGGAAGG
GAGTAACACTGCGAAGAACCACATTGCAGCTGGACCTTGCATCCCGTGAGAATCAGACACCGCGGCACGACCCAGCCTCG
GAATTCGGGACACAACCCGCGGCTTCCCTCGTAAGCCACCGCCCCCTCCCAACCAATAACTGCGCCCAAGCCCGTCCCCA
TCCTCCCCTCCGCAGTTCCAAACCCCTCCACAGCCTCGCTCTCTCAC-ATTCGCACCCGTGAACCCTCTCCTCTCCTCTC
GCTCCTCTCCCTCAACCTTCTTCCAGAAGCCAAGGCC-----CTCTCTCGGGCCCCACT----------CCACCGCCGCG
GTGACATGGGGGGAGGCGCTATGGAGGTGGACCTGACCCACGGCGCGGTGGCGGCGATGTCGCGGTTCCAGCGAGGCCTG
CGCCCGGTGCTGCAGGTGTTGGGCGCCCCTGCCTCGGCGGGCCCCACGGACCGGTACCGCTTCCTGCTCTCCGACGGCGT
GCACTCCCAGGAGGGGATCCTCGTCCCCTCCCTCGACAGCCTCGTCAGGACCGGCCGGCTCTGCGACGGCACCGTCATAC
GCGTCCTCGACTACGTCTGCAACTCCGTCTGCAGCCGAAGGTGACGGCCAATCGCTCTCCCGCCCAACCCCC--GGCGAT
CTACACTGATTGTCTCACGAGATGGATTAGGGTTTTAATGTGCTTTATGCG---------TGCTAAATGGGGGGAAATGC
TAGGGTTCTGCACGGTTTTCCTGTGCCGATTTCCCCCACGCGGTAACTGCGCAAGCAGTATTCCGCGAGATCTATGGCTA
TACTTTTGTGGCTGGTGCATGCACGCTTTCCGCCGGCTTGTAGTTGATTCCTTGTATTACTTGCTAATAATGCGCATTTG
CTAGTGTTGGTTTTGCTGTG-----TACATGACTGAACTTTTTTACATTTT-----------------------------
--------------------------------------------------------------------------------
--------------------AATAGTAAGTTGCAACGGAGTTATGTAGTCAACATATGGCGCC-----------------
-------------GATGGGTAGGTGTCCAGTCTAGCTGGTTCATTTGGTACAACTTGAATCAGATATCACAACCTTGCTT
ACCAGTTTGGAAGGAAATAGCTATCGGGTACTACCAAAACTAGAAGACTGACTTGTGCATTTGTGATGTGGCCGTGAGAT
CTAGCCTTGTCTATTTGTATGGAAACAAAGATTTATATTTAGAGTTCAAATCAATTATTTTGATGTACATTAGAGCACAC
AAACCCTCCATTATCAGATACTCCATCTGTCTCGTCATATAAAACACTCTTATATTATGGGACGGAGGGAGTATATGTTT
TTGCTGCATGCAAGGCCACCTGACGGCACAAGTTTATTGGCTAGATAGGACTTCCGTTTTCCTGATCTTAGGCTTCTGCC
TGAACGTTTTACCTTTTGTTTCTGTGGTTTAATGTCCGTGCCACCCATCGTGATTGTTTAGCTTTATACTATTTTGGAGA
ACTTTTTTCCAGTATAA-ATGACACGCCTGCCTTTTGGTTTGAGAATGGCTCATGTGACAATGTGAATACTAGAATTTTC
ATCATAAATATGTCCATAGTACTAGTATCAACTATGTATATGCTGTTACAATATTACTCCCTCCGTCCCAAAATAAGTGT
CAACTTTAGTACAAAATTGT
>chr1A_700
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CCGCGGCACGACCC-GCCTCG
GAATTCGTGACACAACC-GCGGCTTCCCTCGTACGCCACCGCCCCCTCCCAACCAATAACTGC-CCCAAGCCCGTCCCCA
TCCTCCCCTCCGCAGTTCCAAACCCCTCCACAGCCTCGCTCCCTCAC-ATTCGCACCCGTGAACGCT-------------
-CTCCTCTCCCTGAACCTTCTTCCAGAAGCCAGGGCCA--CTCTCTCTCGGGCTCCGCT----------CCACCGCCGCG
GCGACATGGGGGGAGGCGCTATGGAGGTGGACCTGACCCACGGCGCGGTGGCGGCGATGTCGCGGCTGGCGCGAGGCCTG
CGCCCGGTGCTGCAGGTGGTGGGCGCCCCCGCCTCGGCGGGCGGCACGGATCGGTACCGCTTCCTGCTCTCCGACGGCGT
GCACTCCCAGGAGGGGATCCTCGTCCCCTCCCTTGACAGCCTCGTCAGGACCGGCCGCCTCCGCGACGGCACCGTCATAC
GCGTCCTCGACTACGTCTGCAACTCCGTCTGCGGCCGAAGGTGACGGCCAGTCGCTCTCCCGCCCAATCCCCCCG-CGAT
CTGCATTGGTTGTCCCACGAGATGGATTAGGGTTTTGATGTGCTTTATATGTGTGCTAACTGCTAAATGGGGGGAAATGC
TAGGGTTCTGCACGGTTTTCCTGTACTAATTTCCCTCGTGCGGTGATTGCGCGAGCAGTATGCCGCGAGATCTATGGCTC
TCCTTTTGTGGCTGGTGCATGCACGCTTTCGGTGGGCTTGTAGTTCATTCCTCGCATTACATGCTAATAATGCGCATTTG
CGAGTGCTGGTTTTGCTGTGATGTGTACATGACTGAACTTTTT-ACATTTT-----------------------------
--------------------------------------------------------------------------------
--------------------AGTAGCAAGTTGCAACGGAGTTATGTGGTCAATATACGGCGAT-----------------
-------------GATGGGTAGGTGTCCAGTCTAGCTGGTTCATTTGGTACAACTTAAATCAGTTATCATAACCTTGCCT
GCCAATCTGGAAGGAAATAGCTATCCGGTACTACCAAAACTAAAAGACCGACTTGTGCATTTGTGCTGT-GCCGTGAGAT
CTAGCCTTGTCTATTTGTATGGAAACAAAGATTTATATTTAGAGTTCAAATCAATTATTTTGATGTACATTAGAGCACAC
AAACCTTCCATTATCAGATA-----------------------------------------------------TATATTT
TTGCTGCATGCAAGGCCACCTGACAGCACAAGTTTATTGGCTAGATAGGACTTCCGTTTTCCTGATCTCAGGCTTCTGCC
TGAACGTTTTACCTTCTGTTTGTGTGGTTTAATGTCTGCGCCACCCTTCGTGCTTGTTTAGCTTTATACCATTTTGGAGA
ACTTTTTTCCAATATACCATGACACGCCTGCCTTTTGGTTTGAGAATGGCTCATGTGACA--------------------
--------------------------------------------------------------------------------
--------------------
>chr1B_700
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CCGCGGCACGACCC-GCCTCG
GAATTCGGGACACAACC-G--GCTTCCCTCGTAAGCCACCTCCAACTCCCAACCAATAACTGCGCCCAAGCCCGTCCCCA
TCCTCCCCG-----GTTCCAAACCCCTCCACAGCCTTGCTCTCTCACAATTCGCACCCGTGAAC----------------
---CCTCTCCCTCAACCTTCTTCCAGAAGCCAGGGTCTCGCTCTCTCTCGGGCTCCGCCGGACTCCGCCCCACCGCCGCG
GCGACATGGGGGGAGGTGCTATGGAGGTGGACCTGACCCACGGCGCGGTGGCGGTGATGTCGCGGTTCCAGCGAGGCCTG
CGGCCCGTGCTGCAGGTGGTGGGCGCCCCCGCCCGCCGAGGCGGCACGGACCGGTACCGCTTCCTGCTCTCCGACGGCGT
GCACTCCCAGGAGGGGATCCTCGTCCCCTCCCTCGACAGCCTCGTCAGGACCGGCCGCCTCCGCGACGGCA------TAC
GCGTCCTCGACTACGTCTGCAACTCCGTCTGCAGCCGAAGGTGACGGCCAGTCGCTCCCCAGCCCACCCCCC--G-CGAT
ATGCATTGATTGTCCTACGAGATGGATTAGGGTTTTGATGCGGTTTATGTGTGCTAG---------ATGGGGGGAAATGC
TAGGGTTCTGCACGGTTTTCCTGTGCTAATTTCCCCCACGCGGTGACTGCGCGAGCAGTATCCCGCGAGATCTATGGCTC
TATTTTTGTGGCTGGTGCATGCACGCTTTCCGCGGGCCTGTAGTTGATTCCTTGCATTACATGCTAATAATGCGCATTTG
CGAGTGTTGGTTTTGCTGTGATGTGTACATGACTGAACTTTTT-AACATTTTAATAGTACTCCCTCCGTTCCAAATTAGT
TGACTTGGATTTATCTAGATACAGATGTATCTAACACTAAAACATGTCTAGATATATTCGTATCTAGACAAATCTGAGAC
AACTAATTTGGAACGGAGGGAGTACTAAGTTGCAACGGAGTTATGTAGTCAACATATGGCGCCGATGTCCCTCAAAAAAA
AACATATGGCGCCGATGGGTAGGTGTCCAGTCTAGCTGGTTCATTTGGTACAACTTGAATCAGATATCACAACCTTGCTC
ACCAGTTTGGAAGGAAATAGCTATCCGGTACTACCAAAACTAGAAGACTGACTTGTGTATTTGTGCTGTGGCCGTGAGAT
CTAGCATTGTCTATTTGTATGGAAACAAAGATTTATATATAGAGTTCAAATCAATTATTTTGATGTACATTAGAGCACAC
AAACCCTCCATTATCAGATATAAGA----------------------------------------------TATATATTT
TTGCTGCATGCAAGTCCACCTGACAGCACAAGTTTATTGGCTAGATAGGACTTCCGTTTTCCTGATCTTAGGCTTCTGCC
TGAACATTTTACCTTTTATTTGTGTGGTTTAATGTCCGCGCCACCCTTCGTGGTTGTTTAGCTTTATACCATTTTGGAGA
ACTTTTTTCCAATATAA-ATGACACGCCTGCCTTTTGGTTCGAGAATGGCTCATGTGACAATGTGAATACTAGAATTTTC
ATCATAAATGTCTG--TAGTACTAGTATCAAGTATATATATGCTGTTACAATATTACTC---------------------
--------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S------
-----------------S--------------------------------------------------------------
----------------------------------------------------------------S--SSSSSSSSSSSSS
S-------------------------------S--------------------S--S-----------------------
-S------------------------------------------------------------------------------
------------------S----------S------------SS------------------------------------
---------------------------------------------------------S---S------------------
--------------------------------------------------S------------------------S----
--S--S--------S---------------------S------------S------------------------------
--------------------------SS----------------S-------S--------S-----------------S
---------------------------------S--------------------S-----S-------------------
-S-----------------------------------------S------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S---------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S---
------------------------S-------------------------------------------------------
---------------------S----------------S-------S-----S----------------S----------
-----------S--------------------------------------------------------------------
---------S-S-SSS---------------S---S-----------------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_183
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---CCTGGGTCACCACACTCATC---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>reverse_2199
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TGCCACCCATCGTGATTGTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
