>input_sequence_86461
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-----ATGGCGGCACTGAAGGCGTGCATGCTGCTGTTCACGGCCTTCTTCTTCTCGGCGCACATCCAGCAGTTGTCCGCG
GCCTTCAAGGTGCGCGGCAATGGCG---------GAGGCCATCGGACGGGCGACCGCGTGCTCGCTCACGTCCGCGGCGC
CGTTCGTCACCGGCTTCGGGCGTTTGCGCCTTCGGTGGACTGCTTCGTGGATGGTCTGAAGACGAACAAGCTTCTTCTTA
CTTGA---------------------------------------------------------------------------
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>chr7A_1_TraesCS7A01G360600
CAACTAACCTTAGGCAAATTCTCACTGT--CAATAAGTGTGACGAACGAAATGACCAACACGTAGAACACATACATCTCT
ACTCCTACGTATTGTGACGGTGAGAATCATACCTTAGCTTATCTTATACCTGTCTGC-TCCTAAACATAATACCTTTTAG
AGAATTCACTATGGACTACATACGGAGCAAATTGAGTGAATGTATACACTTAAAATATATGTATATACATCCGTATGTAG
CCCATAGTGAAATCTCTAAAAGGTTTTATATTTAGAATGGAGGGAGTATGAAGCAACACATACATCTCTACTCCTAAAAA
AGTGTGATAAGCTACAATTGCGGCAATGAACGAAATAGTACATGGCTAAGATTCTTTTTTTTTTGCGGGAACATGGCTAA
GATATCGTGGCATGACTAAAGTTATGTGTGGGCGTGTGGCAACCTTAGACTATAAACCAAACATGCCTTAACTTACTATT
ATCATTTTTTGCGGGTGAAACACGCCCTAAGTTTGAACAAAAACAAATTTAGGCTTTTCTGTATTATTATCAA-------
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----------------------------------------------------------------ATATATGTGTTGCCAT
ATATCATATCAGCACTACTTTTGAGACTAGCTAGCTAGATCAGTCGACGCTT----------------------------
----TCGCCTTGTCTACGCATTGCATACCGGTGGGCAAACGGCTGACGCCTGACGGCCTGAGAGCTGAGATACGTAAACG
TATTCATGCATGACTGACTGGTACACGTACTACTAGGGTAATACCATGTCCAAGTTCTTCAGCAATGTTTGACAAGTTAG
CGCTGTCGATCGAGTCAAGTCAATCCTGCCGGGCTAAGTCCA-GCAACGTAGTACGTTAGATAAGCAGATTTGACATATT
CACCATCGCCT---CTCAACTTTTCCGGCCCGATCAAACAAAGCACGCCTTCGGTCAACCGCCCACTCGATCCTTGCTTG
TGCTCCGTCACTCACTCACTCACTATATATAACTCGAT---------------------------------------CCT
AGCTCGATTGCTCCAAGCTCTTGTCC------------------------------------------------------
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--AAGATGGCGGCACTGAAGGCGTGCATGCTGCTGTTCACGGCCTTCTTCTTCTCGGCGCACATCCAGCAGTTGTCCGCG
GCCTTCAAGGTGCGCGGCAATGGCG---------GAGGCCATCGGACGGGCGACCGCGTGCTCGCTCACGTCCGCGGCGC
CGTTCGTCACCGGCTTCGGGCGTTTGCGCCTTCGGTGGACTGCTTCGTGGATGGTCTGAAGACGAACAAGCTTCTTCTTA
CTTGAGGCGGCTGGCTTACTATGGTTTTGAGTTTTGGC---TTCTGGCTGTATATATGTGTGTAATAATAACATTGCTTC
GGACCGATCGCCTTCAATCTGTCAAGAGATAGGAAGTGTATTCATAAATCATAACTGCATGTCCGCAGATGATTATCCAG
ATGGACGCTTTTCTTGTTTCGGAAAAATGTTGACGTTAGGAAGCAAATTACCACCATTCAGAATTTTATAAAACATAACG
ATTGTCTTAAATATATCAGTTTTGCTAAAGCCTTGGTCACCATTCAAAAAAAAAACACTTTACATAAAGGAATGGAGGGT
ATCTTAGAGAGAGGCGCTCACCGAGAACTAGGTCACTGTGGCTGAGGTCGAACTCCGGGGGACTTGCCAGAGAGAGAAAC
GGAAACCACTCTTCTATTACCCCCGCCTGCTTCGGGCTCCAGTTTTATCGTGCCCGCCGTCTGGTCGACGATGAAAGTGG
GGATTTGGGTGTTTGGACATTTGGAATTGGATGGGAGGTGGCTACGGATGTAAATGATATGTATAATTTTCGCTTTGAAT
TCACATCCACATATGTTTTTAAGATGGTATGCACTTATATAAATTCATCACATATGGACTTGCATGTGGATTTTGGTGAA
CAGGGTATCCGTCAGATTTGGTTTCGATAATATTCGACTTATGTGGATTATCCGTTATCTATTGTAGAGTATTCAAGGTT
ATCAAATCGCCTTATCCTAAAAAATAATTAGACCATGGGTCAACCCTAAATACCCGTCAGGCCACAAATTACAATCATAG
ATTATAACTCAAGCCCTAATACGACCACAAATCACACACAAAAGTCATGATCATCTGTATTGTCATAACCTAAACTCTAT
TGAACTGACGTCAGCTCATAGCCGCTTCAACATGAACGCTCCGTGGGTTGTTGGATGAGGCACATAAATCTTGGTTAACG
GGAGCGACGCGACATCAGTGTTTGCAATCGTTATTTGATGGCGGCAAC
>chr7D_5
----TAACCTTAGACAAATTCTCACTATCACAATAAGTGTGGCGAACGAAATGACCACCGCGTAGAACACATACATCTCT
ACTCCTACATATTGTGATGGTGAGAATCATACCTTAGCTTATCTTGTACCTCGTCCGTTCCTAAATATAAGACCTTTTAG
AGATTCCACTATGGGATACATATGGATCA---------------------------------------------------
---------------------------------------GAGGAAGTGTGAAGCAACACATACATCTCTACTCCAAAAAA
AGTGTGGCAAGTTACAATTTTGGCAATGAACGAAATAGT-------------------------------ACATGGCTAA
GATATTGTGGCATGACTAAAGTTATGTGCGGCA-------AACCTTAGACTACAAACCAAACATGCCTTAACTTACTATT
ACTATTTTTTGCGGGTGAAACGTGCCCTAAATTTGAACTAAAACAAATGTAGGTTTTTCTGTATTATTATTATCAAACTA
GCAAATATGCCTGTGCGTTGCAACGGGGGAAGAATTATCAGATTATGCAGGTGTGGTAGATAAAAAAAGTTTGAATCAAA
TGCAAGGATGAGATAAGGGACTTCTATAATGTCATTTCACAAACTATGTATGTGATGTCATGTTGAGATAAGGGACTTTT
AAAAAGTCATTTCAAAAACTGAAAATGTGATGGTCTCATCACGACTTGATTTCCTAAGGCGCCACAATGAAATATATTTT
GACTGAGCAAACTGCATTTATGGACCCCGCCTGAGCTAGACTGATGAGTGATGTGTCTTGCCTTTACCATAGCCAATATT
GTGGTACCAGAATAAATATAGTTGTGTATGAAGCAAAATAGACATTTAGTCATTTTCATATAGCTTGTAAAAACTAAACC
ATAGAAAGTTGTGTCAATTTTTCTTGGGGCTCGGCATCGTACAAACACGGAAATCTTTTTTTACCCAATGCGAGGAACTA
AATAAAATCATAAAATGACCTCTACAGATCCCCTAATAAAACCTCTACATTTTGTTCATTATTTACGGATCTGTTTTAAT
TTTTCTGAAAATTTTCTAAAATTCCGTGGACATTTTTCAAATTCGCAAATATGTTTTGAATATTGGATCATTTAAAAAAG
CATGAACATTATTTATTTCATGGATATTTATTTTAGATCATGATTTTTTTTATAATATGTGAACAATTTTTTGAAATCAT
GAACATTTATGATTTTCCAAATGTTTTTTGAATTCATAAACAATTTATGTTTTTCATTTTTTAGAAAATTCACAACGTTT
TGAAATTTGGTTCTTTTGAAAATCCAGAACTTCATTTAGAGAAGAAAAAACCTCTACGTAAGTGATGGTTCGTTTTGTTC
ATTATTTACGGATCTGTTTTAATTTTTGTGAACATTTTCTAAAATTTCGTGGACATTTTCAAATTCGCAAATATGTTTTT
AGTATTGGATCATTTAAAAAAATCATGAACATCATTTATTTCATGGATATTTATTTCAAATCGTGAATTTTTTTAGTATA
TGTGAACATTTTTTTGAAATCATGAACAATTTCTGATTTTCCAAATGTTCTTTGAATTCACAAACAGTTTATGGTTTTCC
ATTTTTTAGAAAACTCACAACATTTTGAAATTTGGTTCTTTTGAAAATCCAGAATTTCATTTAGAGAAGAAAAATTAAAA
ACAGAAATGAGAAAGTAAATAAAAAGCATAAAAACGAAATAGAAAACAGGGGGCTCCACGACCATGGGCCAGCCCATTAC
CGCGTGCTGTAGGAGGTGGCGCACTTAAGAGTGGAAATGGGGGAGAAAATGGGACAGCACCACGGATCAATCCCTAGTCT
CCCGTGCGGACGACCGTGCCCTTAGCCATCGCACCAGGCACCACTTGTGTGCTTATGTTACAGAAGTGTATTAGTTTATA
AGAACAGAATCCGGCGGCGATTTTAAAATAAAAACGAATCGTTTTTTCTTCGCTTACCGGTGGCAGCCGGGTAATTAGTG
CCAACTTCGAGGCAATTTGCATGACGGACGACCAGAAGCAATAGCCCCTTATTAGTAGGGGAAGATATATGTGTTGCCAT
ACGTCGTGCCAGAACTACTTTTGAGACTAGCTAGCTAGATCAGTCGACGCTTAATATTAAGTTGTGAATCAAAGTTTGGC
AGTTTCGCCTTGTCTACGCATTGCATACCGGTGGGCGAACGGGTGACGCCTGACGGCCTGAGAGCTGAGATACGTAAACG
TAATCATGCATGAGTGACTGGTACACGTACTACTAGGGTAATACCATGTCCAAG---TTCAGCAATGTTTGACAAGTTAG
CGCTGTCGATCGAGTCAAGTCAATCCTGCCGAGCTAAGTCGAGGCAGCGTAGTACGTTAGATAAGCAGATTTGACATATT
CACCATCGCCC---CTCAACTTTTCCGGCCCGATCAAACAAAGCACGCCGTCGGTCAATCGCCCACTCGATCCTTGCTTG
TGCTCCGTCACTCACTCACTCACTATATATAACAC--AGACATCGGCGCTGCCA----TACGTACCGCCTCTAGCAGCCT
AGCTCGATTGCTCCAAGCTCTTGTCC------------------------------------------------------
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--AAGATGGCGGCACTGAAGGTGTGCGTGCTGCTGTTCACGGCCTTCTTCTTCTCGGCGCACATCCAGCAGTTGTCTGCG
GCCTTCAAGGTGCGCGGCAATGGCG---------GGGGCCATCGGTCGGGCGACCGCGTGCTTGCTCACGTCCGCGGCGC
CGTTCGTCACCGGTTTCGGGCGTTTGCGCCTTCGGTGGACTGCATCGTGGATGGTCTGAAAACGAACAAGCTTCTTCTTA
CTTGAGGCGGCTGGCTTACTATGGTTTTGAGTTTT---------------------------------------------
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----------------------------------------------ATCGTGCCCGCCGCCCGGTCGACGGTGAAAGTGG
GGATTTGGGTG--------TTTGGAATTGGATGGGAGGTGGCTACGGATGTAAATGATATGGATAATTTTCGCTTTGAAT
TCACATCCGCATATGTTTTTAAGATGGTATGCACTTACATAAATCCATCACATATGGACTTGCATGTGGATTTTGATGAA
TAGGATATCCGTC------GGTTTCGATAATATTCGATGGATGTGGATTACTGTTACT-TATTATGGATTATTCAAGGTT
ATCAAATCGCCTTATCCGTTAA---AATTAGCTCCTGTGGCAACCCTAA-TACCCGTTAGGCCA----------------
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>chr7B_739
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--------------------------------------------CATGTCCAAG---TTGAGCAATGTTTGACAAGTTAG
CGCTGTTGATCGAGTCAAGTCAATCCTGCCGAGCTAAGCCCA-GCAACGTAGTACGTTAGATAAACAGATTTGACAGATT
ATTCATCACCGCCGCTCAACTTTTCCGGCCCGATCAAACAAAGCACGCCGTCGGTCAGTCACCCACTCCATCCTTGCTTC
TGCTCTGCCACTCACTCACTCACCCCTACATATACGTAGACATCGGCGCTGCCCTTCGTACGTACCGCCTCTAGCTGCCT
TGGTCGAAGCACGTATCGCTAAGATAGCACGTACTCCCTCCGTTCCAAATTACTCGTCGCTGAAATGAATGTATATAGAA
TTAAAATACATCTAGATACATTTATACGTGCGACAAGTAATTCGGAACGGAGCGAGTACTGCTCTAGTCGTCTAGCGGAT
TAAAGATGGCGGCGTTGAAGGTGTGCATGCTGCTGTTCGCGGCCTTATTCTTCTCGGCGCACATCCAGCAGCTGTGCGCG
GCCTACAAGGTGCGCGGCAATGGCGTGCGACGGGGAGGCTATCGATCGGGCGACCGCGTGCTTGCCCACGTCCGTGGCGC
CGTTCGTCACCGGTTTCGGGCACTGGCGCCTTCGGTGGACTGCATCGTCGATGGTCTGAAGACGAACAAGCTTCTTCTTA
CTTAAGGCGGCTGGCTTATTATGGGCTTGACTTTTTTCTTTTTCTGGCTGTAT---------------------------
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>SNPs
SSSS---------S------------S--------------S---------------S-S--------------------
--------S--------S---------------------------S-----SSSSSS--------S----S---------
---S-S--------SS------S---S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S---S--------------------------S-----
------SS---S-------SS------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
-----S----------------------S--SSSSSSSSS------------S---------------------------
-SS------------------SS-------S-------S---------S----S----------------S-S-------
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-SS--S-SS---S-------------------------------------------------------------------
------------------------------------S-----S-------------------------------------
--S----------S----------------------------------------SSS-----------------------
-------------------------------S------------------------------------------------
----------S--------------------------------------S--------S---------------------
---------------------------------S--SS------------------------------------------
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---------------------S----------------------------------------------------------
---------------------------------------------S----------------S-----------------
-------------S-----------------------------S------------------------------------
-----------------------------------SS----------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-S--------S---------
-----------SSSSSSSS------------------------------------------S------------------
--------S----------------------------S------S------------------------------S----
S---S--------SSSSSS------------------SSS----------SSSS-SS-S----S-S--S-----------
-----------------SSS--SSS------SS-S--S-S---------S-------S------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2432
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------------AGTCAAGTCAATCCTGCCGG------------------------------------------------
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>reverse_3959
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--------------------------------------CTCCGTGGGTTGTTGGATGA----------------------
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