>input_sequence_86448
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------------ATGGAGATGTGCATGGACGACAAGTGGAAGCTGTCCAAGAAGGGCAGCCGGAGGTCCGCGGCGGTGGC
GCCGGCGGCGGCCACCGGCAGTCCGGTGGGTGTC---AAGGGCCGGGCGTCGAGGGGCTCCGGCCGGTCCGTGCCGGGGC
GGCTGGCGAGCCTGGCCAAGCAGCAGAGGGCCAGGTTCTACATCATGCGCCGGTGCGTCACCATGCTCGTGTGCTGGCGG
GACTAG--------------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G091800
ATAGGGTGCTGGATATAAAAGTGTTGTTGTGCAAGCTGAGAATTTAAGGTCGAACTGATCACTGTCTGTGGACTCCGTGA
ACTCGTATAGGGGCCGGATTTGATAATCGTGGTTGTAGATACCATTATTTTTTTC-----AACGATGGATGAGGTTGGTT
AAGTGCTGGATACCTATCAACCCAGAGTTTGTGCACGCCTTTTCTCGACTCGCGCGCGTTGTCAGTGTCCATTGTACTCC
TATAAGCTAGCTAGTGCGCGGTCGCTAGGAGC-------------------CATGAGGGCTCGAGCCTTTACTCGCTGCT
GCTCCAACAGATAGCAGTGTGTTCCTCGTTAGTTGATTAACTACGTCGCGTCGTGATCAATCACACGGACGGTGACTTGT
CGTGCTCTGTGGCGTGTGTTGGAGAGAGAGCGAGTTTGACTCGATCTGGGGCCTCGGTGGCCGGTCGTGCTCGGCGATTC
AAGATGATACAGTCCCATGCTACGTGGATCCGTTAACTCCCACGAACGTTTCTGACGCGCCTACAAAGTTTACTGCTACA
TCTTCCCAACAAACAGAGCCGTAGCTAGTA--------------------------------------------------
----------------------------------------------------------CTCCAGTTTTTATCATCATGGA
TGGACCCTGCCCAGCTCAGTTTATGCTAGTACAGTTTTGTAGGTTCAGCACGCTCCGGTTCAAATCAAAGGTCCTAAGAA
AATTGCACCGCAACAACTTGAGCGTGGGCGCCGAAAGAGATGGCCATCGCCGCAAGGGGACACACCCCCATAAATTATTT
GGAAAGTGATGCGCTACCAAACAGACGCACAAACAATAGTCTTAGTTAAGCTACTTACTTAATCAACCTCTATCCCCTCT
CCTCTCCAATCAAATCCAGCCCCCTCATCCACCTTGGATTGGCATTCCGGCACTATAAGTAGCACCCAAGTTACCCGGCT
CTCACACCAACAACCATCCTCAACGACCAAAAGCGAAGACAGGGAGAAGAGAGCACATTGCATATTGGGAGATCGGAAGA
AACAGAGAAGAGATGGAGATGTGCATGGACGACAAGTGGAAGCTGTCCAAGAAGGGCAGCCGGAGGTCCGCGGCGGTGGC
GCCGGCGGCGGCCACCGGCAGTCCGGTGGGTGTC---AAGGGCCGGGCGTCGAGGGGCTCCGGCCGGTCCGTGCCGGGGC
GGCTGGCGAGCCTGGCCAAGCAGCAGAGGGCCAGGTTCTACATCATGCGCCGGTGCGTCACCATGCTCGTGTGCTGGCGG
GACTAGCCTCGGTTTGATCTCTTCTCTGCTTCGAGAGACGGAGACAGAGGTTAACTAAGAGATGTGCCTTAATTCCCATG
GCCATCCTTGGTTTGGTAGACTAAGAAAGATTGTAGATAACACAGTGTGTCACGGCCAAACAGCTTCCATTAGTTTGCTC
TCGCTGCTCCAGTCACTTCCATAGCACTGCACTGCAGGAATGTATGTACCGCGGCAACCAATGTGTAAGGCTAGTCCTCT
TCGTTGCAAG-TTTTCGTTTTTCTTTTAGATCTATGGTGTTTGTTAACTAGTGTGTTCAAATTCGTGAAACATGGAAATG
TCGACACTTTTATTTTTAGAACCGAAATGTCGACAAAATTCGGGTTCAGAAAAAACTGAACATGTTACTCTGGTTTAGAA
AACGGTTTGCATCCAACAACTGAAAATTGTTCGTTGTTCAATTATTAGGATTTTG-----GGAGCACCTTTTAAGTTTCA
GTTTCTAAAACTGACATTTTTGTCGGTCGCAAGTTCTGAAACTTACAATTTTATCGGTCGCTCGTACCAAGTTTTAGAAG
TTGAAACATTTTTGTCAGACGCAGGATCTGAAACTCATTATTTTGTCGGCCGCTCGTACGTTCCAAAAGTTGAAACATAA
CGAAAATTTTA---------------------------------AAACTCATCAAAATGTAATCAAAATGGGTCTCATTT
GAAAGCCCTCATCATCAGAAACACGAATATATAAACAAAATTTAATTTAGACTTTTGGTTCAAAAGATATGAAAGATTGA
AAAATCCAAAGCCAAACGTAAGAGAGGGATGCGTGCCCCGCATATGCGTGCTATAAATCCTCTTCCATGGGAACGGTG-G
GGAATTTGCATCTAACATGCTAGTCCCCACAT-----TACCATTGCAAGCGAAGGGAGATTGTCTATCGCTATCCTCATT
AGTGTTATTTTTTCGTTTGAAACAGAGCCACAAAAACATGCCTTGACTCATTACTCATTTAAAGGATATTGAACTATCCG
CCTTCTTGGGG
>chr5B_37
------------------------------------TGAGAATTTAAGGTCTAACCGGTCACCGTCCGATGGACTCTGCA
AACGTG-TAGTGGCCGGATTTGGTAATCGTGGTTATAAATGCTATTAGTGTCTTGTTTTGAACGATGGATGAGGTTGGTT
AAGTGCTGGATACCTATCAAACCTGAGTTTGTGCACGCCTTTTCTCAACTCGCGCGCGTTGTCAGTGTCCATTGTA----
-----GCTGGCTACTGCGCGGTCGCTAGGAGCCATGTGGGCTTTGTGTGCCCATGAGGGCTCGAGCCTTTACTCGCTGCT
GCTCCAACAGATAGCAGTGTGTTCCTCGTTAGTTGATTAACTACGTCGCGTCGTGATCCATCACACGGACGGTGACTTGT
CGTGCTCTGTGGCGTGTGTTGGAGAGAGAGCGAGTTTGACTCGATCTGGGGGCTCGGTGGCCGGTCGTGCTCGGCGATTC
AAGATGATACAGTCGCATGCTACGTGGATCCGTTAACTCCCACGAACGTTTCTGACGCGCCTACAAAGTTTACTGCTACA
TGTTCCCAACAAACAGAGCCGTGGCTAGTACTACTCTCTCTATCTCAAAATAGTCTCAACATTATACTAGCTCTAGTATA
AATTTGTATTTAACTGAAGACACTTATTTTGAGATGGAAAAAGTACTAGCGTGCGTCGCTCCAGTTTTTATCATCATGGA
TGGACCCTGCCCAGCTCAGTTTATGCTAGTACAGTTT-GTAGGTTCAGCACGCTCCGGTTCAAATCAAAGGTCCTAAGAA
AATTGCACCGCAACTACTTGAGCGTGGGCGCCGAAAGAGATGGCCATTGCCGCCAGGGGACACAGTCCCATAAATTATTT
GGAAAGAGATGCGCTACCAAACAGACACAAAA--AATAGTCTTAGTTAATCTACTTACTTAATCAACCTCTATCTCCTCT
CCTCTCCAATCAAATCCAACCCCCTCATCCACCTTGGATTGGCATTCCGGCACTATAAGTAGAACCCAAGTTACCCGGCT
CTCACACCAACAACCATCCTCAACGACCAAAAGCGAAAACAGAGAGAAGAGAACACATTGCATATTGGGAGATCGGAAGA
AACAGAGAAGAGATGGAGATGTGCATGGACGACCAGTGGAAGCTCTCCAAGAAGGGCAGCCGGAGGTCGGCGGCGGTGGC
GCCGGCGGTGGCCACCGGCAGTCCAGTGGGCGTC---AAGGGCCGGACGTCGAGGGGCTCCGGCCGGTCCGTGCCGGGGC
GGCTGGCGAGCCTGGCCAAGCAGCAGAGGGCCAGGTTCTACATCATGCGCCGGTGTGTCACCATGCTCGTGTGCTGGCGG
GACTAGCGTCGGTTTGAACCCTTCTCTGCTTCGAGAGACGGAGACAGAGGTTAACTAAGAGATGTGCCTTCATTCCCATG
GCCATCCTTTGTTTGGTAGACTAAGAAAGATTGTAGATAACACAGTGTGTCACGGCCAAACAGCTTC-ATTAGTTTG---
---CTGCTTCAGTCCCTTCTATAGCACTGCACTACAGGAATGTATGTACCGCGGCAACCAATGTCTAAGGCTAGTCCTCT
TCGTTGCATTTTTTTCGGTTTTTTG--AGATCTATGATGTTTGTTGACTAGTGTGTTCAAATTCGTCAAAGAGCG-AAAA
TGA---------------------AAATGTCGACGAGATCCGGGTTCAGAAAA-ACTGAACATGTTACTCTGGTATAGAA
AACGCTTTGCATCCGACAACTGAAAATTGTTCGTTGTTCAATTA---GGATTTTG-----GGAGCACCTTTTAAGTTTCA
GTTTCTAAAACTTACATTTTTGTCGGTCACAGGTTCTGAAACTTACGATTTTATCGGTCGCTTGTACCAAGTTTTAGAAG
TTGAAATATTTTTGCT-GACGAAGGATCTGAAACTCATTATTTTGTCGGCCGATCATACCA-------------------
----------A---------------------------------AAACTCGCAAGAACGTAATCAAAATGGGTCACATTT
GAAAGTCCTCGTCACCAGAAATACGAATATGTAAACGAATTC-AATTTAGTCTTTTGCTTCAAAAGATATGAAAGATTGA
AACATCCAAAGCCAAAAGAAAGAGAGGGATGCGTACCCCATACCTGCGTGCTATAAATCCTCTTCCCGGGGAAC-GTG-G
GGAATTTGCATCTGACATGCTAGTCCCGAGAC-TGCGTACCATTGTAAGCGAAGGGAGATTGTCTATCGCTATCCTCATT
AGTGTTATTTTTTCGTTCGAAACAGAGCCACTAAAACATGCCTTGAATCATTACTCATTTAAAGGATACTGAAGTATCCG
CCTTCTTGGGG
>chr5A_84
CGTATA--------------------------------------------------------------------------
----------GGGCCGGATTTGGTAATCGTGGTTATAGATGCTATTAGTGTCTTGCTTTGAACGATGGATGAGGTTGGCT
AAGTGCTGGATACCTATCAAACCTGAGTTTGTGCACGCCTTTTCTCGACTCGCGCGCGTTGTCAGTGTCCATT-------
----AGCTAGCTAGTGCGCGGTCGCTAGGAGCCATGTGGGCTTTGTGTGCCCATGAGGGCTCGAGCCTTTACTCGCTGCT
GCTCCAACAGATAGCAGTGTGTTCCTCGTTAGTTGATTAACTACGTCGCGTCGTGATCCATCACACGGACGGTGACTTGT
CGTGCTCCGTGGCGTGTGTTGGAGAGAGAGCGAGTTTGACTCGATCTG--------GTGGCCGGTCGTGCTCGGCGATTC
AAGATGATACAGTCGCATGCTACGTGGATCCGTTAACTCCCACGAACGTCTCTGACGCGCCTACAAAGTTTACTGCTACA
TGTTCCCAACAAACAGAGCCGTAGCTAGTA--------------------------------------------------
----------------------------------------------------------CTCCAGTTTTTATCATCATGGA
TGGACCCTGCCCAGCTCAGTTTATGCTAGTACAGTTTTGTAGGTTCAGCACGCTCCGGTTCAAATCAAAGGTCCTAAGAA
AATTGCACCGCTACTACTTGAGCGTGGGCGCCGAAAGAGATGGCCATCACCCCCAGGGGACACGGTCCCATAAATTATTT
TGAAAGAGATGCGCTACCAAACAGACACACAAACAATAGTCTTAGTTAAGCTACTTACTTAATCAACCTCTATCTCCTCT
CCTCTCCAATCAAATCCAACCCCCTCATCCACCTTGGATTGGCATTCGGCCACTATAAGTAGCACCCAAGTTACCCGGCT
CTCACGCCAACAACCATCCTCAACGACCAGAAGCCAAAACAGAGAGAAGAGAGCACATTGCATATTGGGAGATCGGAAGA
AACAGAGAAGAGATGGAGATGTGCATGGACGACAAGTGGAAGCTGTCCAAGAAGGGCAGCCGGAGGTCGGCCGCGGTGGC
GCCGGCGGCGGCCACCGGCAGTCCGGTGGGCGTCAAGAAGGGCCGGGCGTCGAGGGGCTCGGGCCGGTCCGTGCCGGGGC
GGCTGGCGAGCCTGGCCAAGCAGCAGAGGGCCAGGTTCTACATCATGCGCCGGTGCGTCACCATGCTCGTGTGCTGGCGG
GACTAGCGTCGGTTTGATCTCTTCTCTGCTTCGAGAGACGGAGACAGAGGTTAACTAAGAGATGTGCCTTAATTCCCATG
GCCATCCTTGGTTTGGTAGACTAAGAAAGATTGTAGATAACACAGTGTGTCACGGCCAAACAGCTTCCATTAGTTTG---
---CTGCTCCAGTCACTTCCATAGCACTGCGCTGCAGGAATGTATGTACCGCGGCAACCAATGTGTAAGGCTAGTCCTCT
TCGTTGCAATTTTTTCGGTTTTTGG--AGATCTATGATGTTTGTTGACTAGTGTGTTCAAATTCGTGAAAGAGCGAAAAA
TGA---------------------AAATGTCGACGAGATTCGGGTTCAGAAAA-AGTGAACATGTTATTCTGGTTCAGAA
AACGGTTTGCATCCCACAACATAAAATTGTTCGTGGTTCAATTA---GGATTTTATATTAGGAGCACTTTTTTAGTTTCA
ATTTCTAGAACTTACGTTTTTGTCGGTCATAGGTTCTAAAACATACGATTTTATCGGTCGCTCGTACCGAGTTTCAGAAG
TTGAAATATTTT-GTCACACGCATGATTTGAAACTCATTATTTTGTTGGTCGCTCATACCA-------------------
----------AGTTCCAAAAGTTGAAACTTAAGGGAATTTTAAAAAACTCATCAAAACGTAATCAAAATGGGTCTCGTTT
GAAAGCCCTTATCACCAGAAACACGAATATGTAAACTAAATTTAATTTTGACTTTTGGTTCAAAAGATATGAAAGATTGA
AAAATCCAAAGCCAAAAGTAAGAGAGGGATGCGTGCCCCGCATCTGCGTGCTATAAATCCTCTTCCATGGGAAC-GGCAG
GGAATTTGCATCTCACATGCTAGTCCCCACATTTGCGAACCATTGTAAGCGAAGAGAGATTGTCTATGGCTATCCTCATT
AGTGTTATTTTTTCGTTTGAAACAGAGCCACAAAAACATGCCTTGATTCATTACTCATTTAAAGGATATTGAACTATCCG
CCTTCTTGGGG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S---S-S----S---S-SS-SSSS-SSS-
-SSSSSS---------------S-----------S-----S-S----S-S-S--S-------------------------
--------------------S--S----------------------------------------------------SSSS
SSSS----------------------------------------------------------------------------
----------------------------------------------------------S---------------------
---------------------------------------------------S----------------------------
--------------S-----------------------------------------------------------------
-S------------------------------------------------------------------------------
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--------------S--------------------------------------S----------SS--------------
------S-------------------S-----------------------------------------------S-----
------------------S-------------------------------------------------------------
-------------------------------------S----S-------------------------------------
--------------------------------------------------------------------S-----------
------------------------------S-------------------------------------------------
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-------S------------------------------------------------------------------------
-----------------------------------------------------------------------------SSS
SSS-----------------------------------------------------------------------------
---------S-------S----S-SSS---------S--------S------------------------S-SS----SS
-SSSSSSSSSSSSSSSSSSSSSSS----------S-S----------------S--------------------------
--------------S-----------------------------SSS---------------------------------
------------S---------------S--S--------------S---------------------------------
------S------------------------------------------------S---SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS-----------------------------------------------S----------------------
--------------S---------------S-----S-------------------------------------------
----------------S--------------------------S------------------------------S-----
-------------S-------------------------------S----------------------------------
----------------------------------------------S---------------------------------
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>forward_452
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--------------------------------AGTTTGACTCGATCTGGGGC----------------------------
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>reverse_1523
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--GCTGCTCCAGTCACTTCCAT----------------------------------------------------------
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