>input_sequence_86443
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------------------------------------------------------ATGGAATCGGGGGGAGCGACGGCCGG
CGTCGGCGCCGAGAAGAATTCGTGGCCGGAGGTGGTGGGCCTGTCGTCGGAGGAGGCCAAGAAGAAGATCATAGAGCACA
AGCCGGACGCCAGCGTCCACGTCGTTCCGGCCGACTCCTTCGTCACCATGGATTACAACACCGGCCGAGTCAGGGTGTTC
GTCGACTCCAACGACAAGGTCACGAAAGCTCCCAGGATTGGCTAG-----------------------------------
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>chr5A_1_TraesCS5A01G475100
CCCAATGCGAAGGCGGAACGGCGTTGAGCATGGGCGTGGCGGAGGGTGTCGGAGCTGACCCTGCTAACTCCATCTGGACG
ACTTCC-TTTCCGCCTTCTCATAAGCTTCCTTCTCTTC----TCACGGGTGCACCACTTCGTTCGGGCAATGGTCCCCGC
CTTGTTCACAACAATAGTGACCCCGACGGGCTCCGTGGAGCCATTCTCCATGGGATGGGCAGATGGCGGAGTGGGCGTCA
ATGGCTAGGATGGAGGAGGAGGTCGGCAATGCTGACACGGAGCAAGGGCGACAACATGGATGCAAGAAAGGGAGGGCGGA
CATGAGGGAGAGGGCTGTCAATTTGGTTGATTTGGTCAATTTTAACAGATTTGAGGTGGGCAAGCCCTGTCAATCTGATA
TGACGGACACGTCCGAACAACCCAAAATCTGCCCCACGTATGGGCCGTGTTTGAGGGGTGCCAGACAGCTCAAACATATG
AGCTAGATTTGGGATTCCGAATGGATATTTTTTTTTATATGAAAAGTGTTTGAATTTGAACTTGTTAGCCCAAACATATG
GGATGGGGTAAGGATCCGGTTAGAGATGCTCTAACAGTCTTCAGT-GGCCAGCCGGCAGCCGGCCAAATGGTAGCTTAAT
TAATTCGGTCTTCTTGTGTTGCACTGAACTTTCGAAGACAAACTGCATCGAGCTGCCATCTGTTGACTGTCGAGACCGTT
GCCTCCAATGCCCCATCGGAGCTACCAAAAGTTAAGAAAACAGAACCTGTGTCCTCATCCTCTTCTCCCACGGATCAGCT
ACAGGCCTACAAATACTAACACCCGCAAGGCACAAT----TACGCACGCACCATCGGCATCCACCAATCTACCATACGCA
CACTCGCTAGTCAAACACTCAAGCCT----AACAGGTTAGCAATCTCAGCTTCCTCTCTTACTACTCCCATCGTTCTGTG
TCCCTCTTAAGCGTTCGTAACTCATGACCGGTTCTCTTGTATTGCAGATAGGCAATGGAATCGGGGGGAGCGACGGCCGG
CGTCGGCGCCGAGAAGAATTCGTGGCCGGAGGTGGTGGGCCTGTCGTCGGAGGAGGCCAAGAAGAAGATCATAGAGCACA
AGCCGGACGCCAGCGTCCACGTCGTTCCGGCCGACTCCTTCGTCACCATGGATTACAACACCGGCCGAGTCAGGGTGTTC
GTCGACTCCAACGACAAGGTCACGAAAGCTCCCAGGATTGGCTAGCTAC-CTGGGCTTATCCTTACGTTTGTACCTAAAT
GTTTTTATATTTCTTCACGAAGGGAATACCAATAAGTGAGTGTATGTACTGATTGATATGCGTTGTTGCCTTTTAAAATA
GCTTGCGTGTGTGTTGATATTTTGTCCATGGCATAAGTGTGGTGTGTTACTGTCTTTTTTTTTCC---------------
---AAAACATGGTGTGTTACTGTCTGGTTGGTTGCTGGAACAAGTCAGACTAT--------TTCTCTTATAAATTCGGGA
CAACTATTTTCGCATTCGTTGTTCTTTTGTAAGCA-TCTCGGACGGCTCCCATTTCTTCAATAATTTTTTGATATTGAAG
GAATTGGACACGC------------------CCCATTTTTCCAATATTTTTTGGGTGATAGCAAAAAAGAGCCCAACTTC
CCCTGTATAGAAGAGGAGTTGGCTGGCTCTCTCCCAATACTCTCCACAATACATGCAACGTGAGCACCTGGTCTTCCCCA
CCTTGTTCGAAGCCGCCGGTGACTTCGACATGGACAACACGAACAAGCTGTTCGAGACAGCACAAGGAAGGTATATTTTT
TCATTTATGTTTTGTTGCGGCTATATGCATAAACTTTGATGCAAACTTCTACATGTATCCCACAATCGTATCTCAACTTG
ATGTACGAATCGGTAGGCATAGATGATATTTCTTTGTCCACTCCGCATGATGACGTTGATGATGTCGTCGTTGAGGTTGC
CCCAACAGAACTGAAAAAATGTTTGAATCGAACTTGCTACTGATTTGTTTAACTTGATAGCTCAACTACATGAATGAGTT
TTACAAACATAGGCATCCAAAAGGCTAGTCATTTTGTCATGATCCTCTGTTGGGTATTTGCTCCAATACAACAAGAAGTG
GAAAGATGGAACAATGAGAGATTCCAACTTAAGAAGAAGGCTAAACCATCATCAACTCTAGAAGTGGACAATAATGGTGA
TGCCGTTGATGACGTTGATGAAGTGTATTCTGCTCCCAACTCAATGGCGAC
>chr5D_1
CCCAATGCGAAGGCGGAATGGCGTTGAGCATGGGCGTGGCAGAGGGCGTTGGAGCTGACGCCGCTAACTCCATCTAGACG
GCGTCCTTTTCCGCCTTCTCAGGAGCTTCCTTCTCTTCCTTCTCACGGGTGCACAACTTCGTTCAGGCAATGGTACCCAC
CTTGTTCACAACAGTAGTGACCCCGACAGACTCCGTGGAGCCATTCTCCATGGCGCGGGCAGATAGCGGAGTGGGCGTCA
ATGGCTAGGATGGAGG---AGGTCGGCAGTGCGGACACAGAGCAAGGGCGACGACATGGATGCGAGAAAGGAAGAGCGGA
CATGAGGGAGAGGGCTGTCAATTTGGTTGATTTGGTCAATTTTAACGGATTTGAGGTGGGTCGGACCTGTCAATTTGATA
TGACGGACACGTCCGAATAACCCAAAATTTACCCCACGTATGGGCCGTGTTTGAGGGGTGCAAGACAGCCCAAACATATA
AGCTAGATTTGGGTTCTGGT-TGGATGCGTTTTTTTACATGAAAAGTGTTTGAATTTCAAC-TGTCAGCCCAAACATATG
GGACGGAGTAAGGATCCGGTTAGAGATGCTCTAACAGTCTTCAGT-GCCGGCCGGCCAGCCGGCCAAACGGTAGCTTAAT
TAATTCAGTCTTCTTGTGTCGCACTGAACTTTCGAAGACAAACTGCATCGAGCTGCCATCTGTTGACTGTCAAGACCGTT
GCCTCCAATGCCCCATTGGAGCTACCAAAAATTAAGAAAACAGAACCTGTGTCCTCATCCTCTTCTCCCACGCATCAGCC
ACAGGCCTACAAATACTAACA-CCGCAAGGCACAAC----CACACACGCACCATCGGCATCCACCAATCTACCATACGGA
CACTCACTAGTCAAGCACTCAAGCCTAACAAACAGGTTATTAATCTCAGCTTCCTCTCTTACTACTCCGATCTTTCTATG
TCACTC-TAAGGGTTCGTAACTCATGACCGGTTCTCTTGTGTTGCGAACAGGCAATGGAAGCCGGGGGAGCGACCGCCGG
CGTCGGCGCCGAGAAGAATTCGTGGCCGGAGGTGGTGGGCCTGTCGTCGGAGGAGGCCAAGAAGAAGATCATAGAGCACA
AGCCGGACGCCAGCGTCCACGTCGTTCCGGCCGACTCCTTCGTCACCATGGATTACAACACCGGCCGAGTCAGGGTGTTC
GTCGACTCCAACGACAAGGTCACGAAAGCTCCCAGGATTGGCTAGCTTAGCCGGGCTCATCCTTGCGTTTGTGCCAATAA
ACGAGGACGTAATTCTGTCTAGCTGTACTCTGCAAGCGTGTGTAC--------TGATATGTGTTGTTGTCGATAGCATAG
CT----------------------------------GTGTGGTGTGTTACTGTCTTTTACTTCTTTTTA----TATAAAA
TATAAAACATGGTGTGTTAGTGTCTGGTTGGTTGCTGGAACAAGTCAGACCCCTTCTCATGTTATCTTATAAATTTGGGA
CAAGTATTTTGGCATTCGATGTTCTTTTGTAAGC-ATCTGCGACGGCCCCCTTTTCTCTCC-AATATTTTCTCATTGAAG
GAGTAGGACTAAAAAGCCATGACCAACAGATCCCATTTTTCCAATATTTTTTGGGTGATCACAAAAGAAAGCCCAACTT-
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>chr5B_574
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------------------GTTAGAGATGCTCTAACACCCTTCAACGGCCGGCCGGCCAGCCGGCCAAACGGCAGCTTAAT
TAATTTAGTCTTCTTGTGTTGCACTAAACTTTCGAAGAAAAACTGCATCGAGCTCCCATCTGTTGACTGTCGACACCGTT
GCCTCCAACGCCCCATCGGAGCTACCCAAAACTAAGAAAACAAAACGTGTGTCCTCATCCTCTTTCCCCACGCAGCAGCC
ACAGGCCTACAAATACTAACA-CCGTAAGGCACAACCACACACACACACACCATCGGCATCCACCAATCTTC--TACGTA
CACTCACTAGTCAAGCAATCAAGCCTAACAGGTTAGCT----ATCTCAGCTTCATCTCTTACTACTCCGATCGTTCTATG
TTACTC-TAAGCGTTCGTAACTCTTGACCGGTTCTCTTGTGTTGCAAATAGGCAATGGAAGCGGGGGGAGCGACGGCCGG
TGTCGGCGCCGAGAAGAATTCGTGGCCGGAGGTGGTGGGCTTGTCGTCCGAGGAGGCCAAGAAGAAGATCACAGAGCACA
AGCCGGACGCCAGCGTCCACGTCGTTCCGGCCGACTCCTTCGTCACCATGGATTACAACACCGGCCGAGTCAGGGTGTTC
GTCGACTCCAACGACAAGGTCACGAAAGCTCCCAGGATTGGCTAGCTTAGCCGGGCTCATCCTTACGTTTGTACCAATAA
ACGAGGACGTAATTCTGTCTAGCTGTACTTTGCAAGCGTGTGTAC--------TGATATGTGTTGTTGTCGATAGCATAG
GT----------------------------------GCGTTGTGTGTTATTGTCTTTTACTTCTTTTTATTTATATAAAA
TATAAAACATGGTGTGTTACTGTCTGGTTGGTTTCTGGAACAAGTCAGACCCCTTCTCATGTTATCTTATAAATTTGGGA
CAACTATTTTCGCATTCGATGTTCTTTTGTAAGCAATCTGCGACGGCCCCCTTTTCTCTCC-AATATTTTTTTATTGAAA
GAGTAGGAC-----------------------------------------------------------------------
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>SNPs
------------------S---------------------S-----S--S---------S-S-------------S----
S-S------------------SS-------------------------------S---------S---------S---S-
-------------S-------------S-S-----------------------SSS--------S---------------
----------------SSS---------S---S-----S-------------S----------S-------S--S-----
----------------------------------------------S-------------SSS-S---------S-----
-----------------S----------S-S------------------------------S-------S---------S
-------------S-SSS-SS-----SSS--------S-------------------S---S---S--------------
---S--S----------------------------------------S-SSS-S-S------------S-----------
------S-------------------------------------------------------------------------
------------------------------S-----------------------------------------S------S
---------------------S-------------S----S--S----------------------------------S-
-----S--------S------------------------SS---------------------------S--------S--
--S---S---------------------------------S-----S-------------S-------------------
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-----------------------------------------------SS--S-----S-----------------S-S-S
SSSSSS-SS-SSS-SSSSSS--SSSSSSS-SSS---S-S-----SSSSSSSSS-------S-------S-SS-SSS-SSS
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------SS--SSS---------------
--------------------------------------------------SSS----------S-----------S----
------------------S--------------------SS------S---S-----SSSSS---S----SS--------
--S-S----SSSS----------------------------------------------SS-----S-S----------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_895
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---------------------------------------------------------------------------ACGCA
CACTCGCTAGTCAAA-----------------------------------------------------------------
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>reverse_1813
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----------------------------------------------------CGAGACAGCACAAGGAAGGT--------
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