>input_sequence_86427
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--------ATGGGGCAGCTGGGGAAGCTGGTGGACGGGCTCAGGTCCAAGATGCGGGCCGGTGGCGGC------------
GGGAAGAAGAA---------------GGCGGCGGCGGCGGCATACCAGCAGATGGGCAAGACGGACAGCATGAGGGTGGA
GATCAAGAGCCGGCAGGCCCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATGGGCCGCCGCAGGAGCAGGA
ACAAGCGCTTCTTCCTCGCCTTCTGA------------------------------------------------------
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>chr2D_1_TraesCS2D01G512300
CAAGAGTAATATCACTAAGCATATTTCTCCTAAGTGGGTTTTCCACCATGAACTTCAGAAAAGTGAGGAAATAAACATCT
TGCAAGTTAAGTCATGTGAAAACCTTGCTGATTTATTTACCAAGTCTCTACCAAATACTACATTCCATAAATATGTTCAT
AGAATTGGTATGCGACGACTTCGGGACTTGCAAGTATCAGGGGGAGTTTCTCCCTGAACTATTCCTGTTTAAAAACATCA
TATTGTACTCTTTCTCTTTGTGAGTTTATGTTGCAGGTTCTCATCAAGGATCCTATTGAAGAATTTTTGA-GAAGGATCT
TTTCGAGGTGATGATACTACAATGGACAATCTTAGGGATGATGATCATACCTAGACAAGCGTATGAATATTCTACATGGA
CAAGTGTAGATTACGGAGAGTATTAGAATTAATTAATTATGTTAAATTAATAGGGAATCTATTTTTGCCTAAACACCGTG
CGGTTGCATAGCAAGGGACGTGTCTCTCTTTCAAACCGTTGCAT-CCTTTAATTAGCAACCGACCTAGGATATGACTGTT
CGAACCGTCGAGTCTATTCGACGCATCTCTTCCGGCCATATATAAACTGTACTCTTTCTATCAATCAAAACAAGTTGATC
TTTTCACTCAAAACATGTTTGTCTGTTTGTCTGTCCGTTTGTCTGTCTTTCCCTCCAATCAAGAGCTAGAGCCATTTCAG
GTCATTTTCTATTGCTACGTCACCAACTCGCCGGCTTTTCCGTTGCATGGTTC----TATTTAACCACCACGGATACCCA
CCTGTATTCTCCTCCTCACTTCTGTATGCTTCGTG------------CTTTCAT----CTGCCTCTTCCTGCTCAGGT--
--ATCTAGCTTGCTCGTTTC--TGGTATCCATGTCCAACATGTGTTTGTCGCGCC----GTCGGCTGCCGGTGGAATTCA
GCTAAT---------------TTGCTTATTTTTTGTACGTGC-GTAGAGTTTTTCGTCCGGGGGAAGGGGGATCCATCCA
TGGTGATGATGGGGCAGCTGGGGAAGCTGGTGGACGGGCTCAGGTCCAAGATGCGGGCCGGTGGCGGC------------
GGGAAGAAGAA---------------GGCGGCGGCGGCGGCATACCAGCAGATGGGCAAGACGGACAGCATGAGGGTGGA
GATCAAGAGCCGGCAGGCCCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATGGGCCGCCGCAGGAGCAGGA
ACAAGCGCTTCTTCCTCGCCTTCTGATCACCAGAGCTAGCTGCCCG---------TCTTCTTCTTCTTCTTCACAAAGAA
GAGATGCCCTGCCCTAT-------GTCCTAACCGGTGAAGTTTAGTGCTAG----CATATGCGTACGGTTGC--ATAGTG
GATGTAAAGAAAGCAAACAGCAAAGCCCTCCGGCCGCTACCACCCGTAACCCCACATGCGAATGATGTAGCCGCCGCACA
CAGTTGGTGATATGTATCTATCTATCTCTATCTCACCCGTAAACTTGCTCTTCCATTTAGCTGTGAAAGAACTTCAACCT
TTGCAAACTGGGATCAACGTACGTTTGTTCGGTTAAATTGTATTCCTTCTGTAAAGAAATATATAATCGTTTTGATCACT
TTTTATCGGTTTGTGCCATTCGCTCAGCAGTACATGTATTGTGTCCGTACGGACGTACAAGTACCAGATGTATGTATACA
AGTTGTGTTTAGTCGTGCGGAATGGCTTTACGTACGGTTTCATTGGGTAAGCTGTTCCTTTCCAAGGATAAACTTAATTA
AGAAAACTGATGAGATGATCCCAAGAAGTACTGCGATGGAATAACACATGAATAATTGTCCATTGGCTTTTCACTCTTTA
CGCGTGCAGCCAGTGAACCAAAATGACTGCCACTTGCGA---------CCAATCCTGCTTTCCATCATCCATATTTGACT
TTCCTCATGTCTGACTTTTTTCTCATTCGGCCTATCCATCACCCCCTCCCTTTGAAAATAGAAGCAGCTTAGACAAGCCA
CCATTATATGCTCTATACCCCCTAAGGGCATCCCAACACGCATCGTCAAAACGCCCACAACCGACCGGACCAAGCGGTCC
GGACGCACTTTGTTGCCATCCAACATGGTACCCAATCCGTCCGCAGGTTTTTTCGTAAATTGGACGCAAATCAGAGGGCT
TTGCGGGCATCCGGACCGCTGCCACATACGCGTTCGTCCCCAAGACCCAACCATAAAGATACCCCGCGTGAAGCGGCTGC
CACGCATTCGGTCGGCG
>chr2D_1
CAAGAGTAATATCACTAAGCATATTTCTCCTAAGTGGTTTTTTCCCCATGAACTTCTGAAAAGTGGGGAAATAAACATCT
TGCAAGTTAAATCATGTGAAAACCTTGCTGATTTATTTACCAAGTCTCTACCAAATACTACATTCCATAAATATGTTCAT
GGAATTGGTATGCGACGACTTCGGGACTTGCAAGTATCAGGGGGAGTTTCTCCCTGAACTATTCCTGATTAAAAACATCA
TATTGCACTCGTTCTCTTTGTGAGTTTATGTTTCAGGTTCTCATCAAGAATCCTATTGAAGAATTTTTGAAGATGGATCT
TTTCGAGGTGGTGATACTATGATGGACAACCTTGGAGATGCTGATCATACCTGGACAAGCATATGAAGATTCTACATGGA
CAAGCGTAGATTAGGGGGAGTGTTAGAATTAATTAATTATGTTTAATTAATAGGGAATCTACTTTTGCCTAAACACTGTA
CGGTTGCATAGCAAGGGACGTGTCTCTCTTTCCAACCGCTGCATCCCTGTAATTAGCAACCGACCTAGGATATGACTGTT
TGAACCGTCGAGTCTGTTCGACGCATCTCTTCCAGTCATATATAAGTTGTACTCTTTCTACCAATCAATACAAGTTGATC
TT------------------------------------------------------------------------------
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>chr2D_1
CAAGAGTAATATCACTAAGCATATTTCTCCTAAATGGTTTTTTCCCCATGAACTTCTGAAAAGTGGGGAAATAAACATCT
TGCAAGTTAAATCATGTGAAAACCTTGCTGATTTATTTACCAAGTCTCTACCAAATACTACATTCCATAAATATGTTCAT
GGAATTGGTATGCGACGACTTCGGGACTTGCAAGTATCAGGGGGAGTTTCTCCCTGAACTATTCCTGATTAAAAACATCA
TATTGCACTCGTTCTCTTTGTGAGTTTATGTT-CAGGTTCTCATCAAGAATCCTATTGAAGAATTTTTGAAGAAGGATCT
TTTCGAGGTGGTGATACTATGATGGACAACCTTGGAGACGCTGATCATACCTGGACAAGCATATGAAGATTCTACATGGA
CAAGCGTAGATTAGGGGGAATGTTAGAATTAATTAATTATGTTTAATTAATAGGGAATCTACTTTTGCCTAAACACTGTA
CGGTTGCATAGCAAGGGACGTGTCTCTCTTTCCAACCGCTGCATCCCTGTAATTAGCAACCGACCTAGGATATGACTGTT
TGAACCGTCGAGTCTGTTCGACGCATCTCTTCCAGTCATATATAAGTTGTACTCTTTCTACCAATCAATACAAGTTGATC
TT------------------------------------------------------------------------------
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>chr2D_658
TGTGTGTTTGT---------------------------------------------------------------------
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------------------------GTCTGTCTGTCCGTCT-------TTTCCCTCCAATCAAGAGCTAGAGCCATTTCAG
GTCGTTTTCTATGACTACGTCGCC---CCGCCGGCTTTTCCGTTGCATGGTTCTATATATGTAACCACCACTGGTGCCCA
CCCGTATTCTCCTCTCCAGTTCTATATCCCTTTGC----GCCAGCTACTTTGAT----CTGCCTCTTCCTGCTCAGAT--
--AGGTACCATCTT-GTTTC--TGTT---------------------------------------------TAGAATTCA
GCTAGTTCAGCTACTGGCAACTTGCTTATTTTTTGCCTTTCTTGCAGGGAATTTAACCTGTGCGAAGGAACATCGATCGA
TGGTGATGATGGGGCAGCTGGGGAGGCTGGTGGACGGGCTGAGGTCCAAGATGCGGGCCGGCAGCGGC------------
GGGAAGAAGGGGACGGGGAAGAAGGCGGCGGGGGCGGCGGCCTACGAGCAGATGGGCAAGACGGAGAGCATGAGGGTGGA
AATCAAGAGCCGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGATTCCATAG---GCCGCAGGAGCAGGA
ACAAGCGCTTCTTCCTCGCCTTCT--------------------------------------------------------
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>chr2B_658
TGTGTGTTTGT---------------------------------------------------------------------
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------------------------GTCTGTCTGTCCGTCT-------TTTCCCTCCAATCAAGAGCTAGAGCCATTTCAG
GTCGTTTTCTATGACTACGTCGCC---CCGCCGGCTTTTCCGTTGCATGGTTCTATATATGTAACCACCATGGGTGCCCA
CCCGTATTCTCCTCCCCAGTTCTATATCCCTTTGCCCCAGCTAGCTACTTCCAT----CTGCCTCTTCCTGCTCAGAGAG
CGAGGTACCATCTT-GTTTC--TGTTATCCATGTCCAGTATCACTTTGTCCAGCC----GT----TGCCGGTAGAATTCA
GCTACTTCAGCAACTGGCAACTTGCTTATTTTTTGCCTTTCTTGCAGGGAATTTCATCTGTGCGAAGAGGGATCGATCGA
TGGTGATGATGGGGCAGCTGGGGAGGCTCGTGGACGGGCTGAGGTCCAAGATGCGGGCCGGCGGCGGT------------
GGGAAGAAGGGGGCGGGGAAGAAGGCAGCGGCAGCGTCGGCGTACGAGCAGATGGGCAAGACGGAGAGCATGAGGGTGGA
GATCAAGAGCCGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATAG---GCCGCAGGAGCAGGA
ACAAGCGCTTCTTCCTCGCCTTCT--------------------------------------------------------
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>chr2A_658
TGTGTGTTTGT---------------------------------------------------------------------
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------------------------GTCTGTCTGCCCGTCT-------TTTCCCTCCAATCAAGAGCTAGAGCCATTTCAG
GTCGTTTTCTGTGACTACGTCGCC---TCGCCGGCTTTCCCGTTGCATGGTTCTATATATGTAACCACCACGGGTGCCCA
CCTATGTTCTCCTCTCCAGTTCTATATCCCTTTGCGCCAGCTACTTTGATTTGATCTGCTGCCTCTTCCTGCTCAGAT--
--AGGTACCATCTT-GTTTC--TGTTATCCATGTCTAGTACCAGCTTGTCCCGCC----GT----TGCCGGTAGAATTCA
GCTAGTTCAGCAACTGGCAACTTGTTTATTTTTCGTTTTTCTTGTAGGGAATCATACCTGTGCGAAGGAGGATCCGTCGA
TGGTGATGATGGGGCAGCTGGGGAGGCTGGTGGACGGGCTGAGGTCCAAGATGAGGGCCGGCGGCGGGAAGAAGGGGGCG
GGGAAGAAGGC---------------GGCGGCGGCGGCGGCGTACGAGCAGATGGGGAAGACGGAGAGCATGAGGGTGGA
GATCAAGAGCCGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATAG---GCCGCAGGAGCAGGA
ACAAGCGCTTCTTCCTCGCCTTCT--------------------------------------------------------
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>chr2B_768
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-------------------------------------------------GTTC----TATTTAACCACCACGGGTACCCA
CCTGTATTCTCCTCCTCACTTCTGTATGCTTCGTG------------CTTTCAT----CTGCCTCTTCCTGCTCAGGT--
--ATCTAGCTTGCTCGTTTGTGTGGTATCCATGTCCAACGTGAGTTTGTCGCGCCGTCGGT----TGCCGGTGGAATTCA
GCTAAT---------------TTGCTTATTTTTTGTACGTG-TGTAGAGTTTTTCGTCCGGGGGAAGGGGGATCCATCCA
TGGTGATGATGGGGCAGCTGGGGAAGCTGGTGGACGGGCTCAGGCCCAAGATGCGGGCCGGTGGCGGC------------
GGGAAGAAGAA------------------GGCGGCGGCGGCATACCAGCAGATGGGCAAGACGGACAGCATGAGGGTGGA
GATCAAGAGCCGGCAGGCCCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATGGGCCGCCGCAGGAGCAGGA
ACAAGCGCTTCTTCCTCGCCTTCTGATCACCAGAGCTAGCTGTTCGTCTTCTTCTTCTTCTTCCTCTTCTTCACAAAGAA
GAGCTGTCCTGCCCTATGTCCTAAGTCCTAACCCGTGAAGTTTAGTGCTAGCTAGCATATGCATACGGTTGCATATAGTG
GATGTAAAGAAAGCAAACAACAAAGCCCTCCGGCCGCTACCACCCGTAACCCCACA------------------------
CAGTTGGTGATATGTATCTATCTATCTCTATCTCACCCGTGAACTTGCTCTTCCATTTAGCTGTCAAAGAACTTCAACCA
TTGCAAACTGGGATCAACGTACGTTTGTTCGGTTAAATTGTACTCCTTCTGTAAAGAAATATAAAATCGTTTAGATCACT
TTTTATCAG-TTGTGCCATTCGCTCAGCAGTACATGTATTGTGTCCGTACGGACGTACAAGTACCAGATGTATATATACA
AGTTGTGTTTAGTCGTGCGGGATCGCTTTACGTACGGTTTCATTGGGTAAACTGTTCCTTCCCAAAGACAAAAC---TTA
AGAAAGCAGATGAGATGATCCCAAGAAGTACTGCGATGGAATAACACATGAATAATTGTCCATTGGCTTTTCACTCTTTA
CGCGTGCAGCCAGTGAACCAAAATGACTGCCACTTGCAGTTACTGTAGCCAATCCTGTTTTCCATCATCCATATTTGACT
TCCCTCATGTCTGACTTTTTTCTCATTCGGCCTATCCATCACCCCCTCCCTCTGAAAATAGAAGCAGCTTAGACAGGCCA
CCATTATATGCTCTATACCACCTAAGGGCATCCCAACACGCATCGTCAAAACGCCCACAACCGACCGAT-CAAGCGGTCC
GGACGCACTTTGTTGCCATCCAACATGGTACCCTATCGGTTCGCATGTTTTTTCGTAAATCGGACGCAAATCAGAGGGCT
TTGCGGGCGTCCGGACCGCTGCCACATACGCGTCCGTCCCCAAGACCCAACCATAAAGATACGCCGCGTGAAGCGGCTGC
CACGCATTCGGTCGGCG
>SNPs
-------------------------------------S----S-S-----------S--------S--------------
----------S---------------------------------------------------------------------
S------------------------------------------------------------------S------------
-----S----S---------------------S---------------S-------------------------------
----------S--------SS--------S---S-S----S-----------S-------S------S------------
----S--------S--S----S---------------------S-----------------S--------------S--S
--------------------------------S-----S---------S-------------------------------
S--------------S-----------------S-S---------SS-------------S-------S-----------
--SSSSSSSSSSSSSSSSSSSSSS--S-----------S-SSSSSSS---------------------------------
---S--------SS-------S--SSS----------------------------------------------S------
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------------------------------------------S------------------SSSS---------------
-----------------------------------------S--------------------------------------
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------------------------------------------SS-------------------S----------------
---S--S--------------------------S----------------------------S-----------------
-------------------S------------------------------------SSSSSSSSSSSSSSSSSSSSSSSS
----------------------------------------S-----------------------S--------------S
------------------------------------------S--------------------S--------S-------
-------S-S---------------------------------------------------------------S------
--------------------S--S--------------------------S---------S----S--S---SSSSS---
-----S-S------------------------------------------------------------------------
-------------------------------------SS------------------S----------------------
-S-------------------------------------------------S-----------------------S----
-------------------S-----------------------------------------------SSS----------
---------------------------------S---S--S----S--------------S-------------------
--------S------------------------S----------------------------S-----------------
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>forward_513
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-------------AGGGACGTGTCTCTCTTTCA-----------------------------------------------
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>reverse_2100
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-------------------CCCTAAGGGCATCCCAACAC-----------------------------------------
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