>input_sequence_86420
--------------------------------------------------------------------------------
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---------A----TGGCAGCAATGGGCGTGGGCGGAGCGGTGAAGATGATCATCGGGGCGAAGGAGGAGCGGGTGGTGG
CCACGGGCAAGGCGCCCGGCGCGTGCCCGTCCTGCGGCGGCCCCGTGGTGGCCACCGACGTGGAGAGCGAGCGGCGCATC
CTCTGCCTCCCGCTGTGCCTCAAGAGCAAGCGCAAGTACTCCTGCACCCGGTGCTTCCGCCGCCTCGTCACCGTCTACAG
CTAG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>chr2B_1_TraesCS2B01G453700
GCTAAACTAAAAGATAATTCGACATGGAGTACATACATGGCATTACACGGGGGAGTATTTATAAGCAGTGACTTGATTTA
AGGAAGAGTTAGCCGATCGATTCTTTTTAGCAAAAATCAAAATGGTCAATGTAAACATGTATCTCGCAAAGAAGAAAAAC
ATAGATAACATGACATAAT----TTTGAACTATGTAAATTTGGCACGTGCACATTTT--CCATTTTCAAGTATTGTTTCT
AGGCAACATATACAAATGACTTGCTAGGGAATGGCATATCGAGACAGGCAGGAGAACAAC---TATATCCAAACTAAGAT
GTCTTCAACCGTAGGCCTTATCGCGTTCATCGT-----CTAGCCCAAAAGACCAAAAACTTCATCTTATCATGGATGCGT
ACGAAA-GCAAGATGGGCACACGCATGCATAAACTTTAATGTTTAGTAGA------------------------------
------------------CAACAAATAAACACATATAGTAATGTACTGTACCAAACGGTTTGTGTAGTACTCCCTCCGTT
CCTAAATATTTGTCTTTCTAGAGATTTCAACAAGTGACTACATACGAAGCAAAATGAGTGAATCTACACTTTAAAATATG
TCTACATGCATCCGTATGTTGTGTTCATTTGAAATGCCTGGAAAGACAAATATTCGAGAACGGAGGGAGTAGTGTGGATT
TTTAAAGAATGTAATGTACACTAGCGCCGCTAAATGAAAAATAATAGTAATAAGCAAAGAGCAAAGCCCT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GCTACTGTAGCGTGTACTC
CTCCACTGG-----------------------------------------------------------------------
------------------------------------GGAGC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CGCACATGGGCCTACCGTGGGTCGCATATCCATCTAGAGTTCTAGACGTACGCGAGCCGGTAAA
AGCAAAACCCAAACGGGTCGCTGCCGCGCGCGA-----------TCCTG-CCCCTTCTTCCCGCCTGCGCCCTCGTCCCC
TCCGC------------------------------CACCGGCCACA-AAAATCCCCAGACTTTTCAAAAGCCAA-----G
ATCGTCCCACCTCC--C---TCCAATCCCCA--TCTCC-----TTCC-----TCTGGCGCGACCGAGGGTATCGTCCATC
----G----A----TGGCAGCAATGGGCGTGGGCGGAGCGGTGAAGATGATCATCGGGGCGAAGGAGGAGCGGGTGGTGG
CCACGGGCAAGGCGCCCGGCGCGTGCCCGTCCTGCGGCGGCCCCGTGGTGGCCACCGACGTGGAGAGCGAGCGGCGCATC
CTCTGCCTCCCGCTGTGCCTCAAGAGCAAGCGCAAGTACTCCTGCACCCGGTGCTTCCGCCGCCTCGTCACCGTCTACAG
CTAGTCGCTCCTCAAGCCTATCCTCCTGCCG----ATCCATCCATCCATCGATCAACTAGCGTGCG--------------
---------------G----------------AGT----------------TCTTTGGTTCTTACTCCCTCCGTTCCAAA
ATAGATGACCCAACTTTGTACTAAAGTTAGTACAAAGTTGAGTCATCTATTTTGGAACGGAGGGAGTACTTC---TTAGT
TGGCCGTGGTTACGGCCCTAGAGTAGCTT----GCTAGCCTGGCTAATGTAATGTAATGGTGATTCTGAGTTAATTCTTC
T-----ATATC--------------TAGCTTATTTGGTGGGCGTGCATCACGTGAAGGGCTGCAAAACTGGCACTCTGCT
GTGTCTTGCAGCAACCTCCCTGTCAATGGTGGCGGGGCACCTCCGCGTTAATGCGCAGCCGCGCAGGCCAGTAATGGAAA
TCTGGAACGCGCCAGCTCCTCCTTCCTGATTAAG--TTTTTT--------------------------TGAGTAATCCTT
CTTGATTAAGT--TTTTTGAGATAATCCTTCTAGATCACGTAAGATGGTGTAT----TTAACGCACAGCTGGGACCGACC
ATCATGGTGAGCGA----TAAAATGCAGTCCAGGCCCACTGCCCAGTGACTAGCGTACCCGTCTGTTCCT---AAAAAAA
AAAGTACATTGACTCGTCCCGATCGATCCCGCAAGGCTGTCCAACCTGAGCT-TTTTCTTTCCTTTTTTTGCGAAGGTTA
CAGTAACCTGTACTGA--------TAAGCAGTATAGCAGCCACAGAATCTCCGTCGCTGCATGTACTAGAGTGGTAGCTG
CCACAAATCGATGGTGACGCACACAGGCTTTG-------------GCTGCCACTGCAGAAGCAGCCGGCCGGCGCGCGGC
CCGTCCGTCCGTTGGTTAATTGTTCCTTTCGCGGGCAATCACGTACGTC---GTACGAGTAAAATCCCCGCGATTCCAAA
GGAGTGTAAGAACGTGGGTCTCATCTTTTCTACAAATGCCGTTACATCGGAAGGCTTTGGTCCTTGCTCATCGACAAATA
TCACATTCACGGGCTTGACATAACCGTTTGGCCCTTGTTTG
>chr2B_1
GCTGAACAAAAAGATAATTCGACATGGAGTACATACATGGCATTACACGGGGGAGTATTTATAAGCAATGACTTGATTTA
GGGAAGAGTCAGCCAGTCGATTCTTTTTAGCAAAAATCAAAATGGTCAATGTAAATATGTATCTCGCAAAGAAGAAAAAT
ATAGATAACATATAATAAT----TTTGAACTATGTAAATTTGGCACGTGCACATTTT--TCATTTTCTAGTATTGTTTGT
AGGCAACATATACAGATGACTTGCTAGGGCATGGCATATCGAGACAGGCAGGAGAACAAC---TATATCCAAACTAAGAT
GTCCCCAACCGTAGGTCTTATCGCGTTCATTGT-----CTAGCCCAAAAGACCAAAAACTTTATTTTATCATGGATGCGT
ATGAAA-GCAAGATGGGAACACGCATGCATAAACTTTAATGTTTATTAGT------------------------------
------------------CAACAAATAAACACATATAGTAATGTACTGTACCAAGCTGTTTGTGTAGTACTAGTATGAT-
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TTT
TTAAAG--ATGTAATGTCCACTAGCGCCGCTAAAAGAAAAAAAAAAGG--------------AAAGCCCT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GCTACTGTAGCGTGTACTC
CTCCACTGG-----------------------------------------------------------------------
------------------------------------GGAGACGCACATGGATCGGGCTTGCATGCTCCCTTCCCATGCTC
CCACCTGTGCTCTTACTTTATCCTACGGCTGTCTTTTTTTTCTATTTCTAATCTAATCATCTCACCCCTAATTTTAAGGA
GGTGGGACCGAACTTTATTTTCTTCCAATCAAATCAAGCCACGTACGCGGGAGTACGGATGAACACATGCAGGGGGAGCA
GGCAAGTCTCGTCCCACGCACATGGGCCTCCCGTGGGTCGTATATCCATCG--------AGACGTACGCGAGTCGGTAAA
AGCAAAACCCAAACGGGTCGCTGCCGCGCGCGG-----------TCCTGCCCCCTGCTTCCCGCCTGGGCCCTCGTCCCC
TCCGCTATATAT--------GCCTTC----CCCGTCACCGGCCACA-AAAATCCCCAGACTTTTCGAAAGCCAA-----G
A---TCCCACCTCC--C---TCCAATCTCTA--TCTTC-----TTGC-----TCTCGCGCGGCCGAGGGTATCGTCCATC
----G----A----TGGCAGCAATGGACGTGGGCGGAGCGGTGAAGATGATCATCGGGGCGAAGGAGGAGCGGGTGGTGG
GCACGGGCAAGGCTCCCGGCGTTTGCCCGTCTTGCGGCGGCCCCGTGGTGGCCACCGACGTGGAGAGCGAGCGGCGCATC
CTGTGCCTCCCGCTGTGCCTCAAGAGCAAGCGCAAGTACTCCTGCACCAGGTGCTTCCGCCGCCTCGTCACCGTCTACAC
CTAGCCGAATC-CAAGCCTCTACTCCTACCG----ATCCATCCAACCATCGATCAACTAGCGTGCG--------------
---------------GCGTCGAACAATCCCCGAGT----------------TCTTTGG----------------------
---------------------------------------------------------------------TTC---TTAGT
TGGCCGTGGTTACGGTCCTAAAGTAGCTTGCTAGCTAGCCTGGCTAATGTAATTCATTCATCTAATTTCCAG--------
-TAGCCATACC--------------TAGCTAATCTGGTGGGCGT---------GAAGGGCTGCAAAACTGGCACTCTGCT
GTTTCTTGCAGCAACCTCTCTGTCAATGGTGGCGGGGCACCTCCGCGTTAATGCGCAGGCCAGTA-------A-TGGAAA
TTTGGAACGCGCCAGCTCCTCCTTCTTGATTAAG--TTTTTTGAGTAACCCTTCTTGATTAAGTTTTTTGAGTAATCCTT
CTTAATTAAGT--TTTTTGAGATAATCCTTCTTCATTAAGTAAGATGGTGTAATTGATTAATGCACGGCTGGGACAGAAC
ATCATGGTGATCGA----TAAAATGCAGTTCCAGCCCACTCCCCAGTGACTAGCGTACCCGTCTGTCACT-------AAA
AAAGTACATTGACTCGTCTCGATCAATCTC-----GCTGTTCAACCTGAGCTGTTTTCTTTCCTTTTTTTGCGAAGGTTA
CAGTAATCTGTACTGATAAGCACTTAAGCAGTATAGCAGCCACAGAATCTCCGTCGCTGCATGTACTACAGTGGTAGCTG
CCACAGATCGATGGTGAC-------------G-------------GCTGCCACCGCAGAAGCAGCCGGCCGGCGCGCGGC
CCGTCCGTCCGTTGGTTAACTGTTCCTTTCGCGGGCAA-----TACGTC---GTACGAGTAAAATCCCCGCGATTC----
--------------------------------------------------------------------------------
-----------------------------------------
>chr2A_1
GCTGAACTAAAAGAGAATTCGACATGGAGTACATACATGTCATTACATGGGGGAGTATTTATAAGCAGTGACTTGATTTA
AGGAAGAGTCAGCCGGTTGATTCTTTTTGGCAAAAATCAAAATGGTCAATGTAAATATGTATCTCGCAAAGAAGAAAAAC
ACAGATAACATGTACTCCAAAAATTTGAACTATATAAATCTGGCACGTGCACATTTT--CCATTTTC-----TTGTTTGT
TGGCAACATATACAAATGACTTGCTGGGGCATGGTGTATAGAGACAGGCGAGAGAACAACGCTTATATCTAAACTAAGGT
GTCTTCAACCATAGGCCTTATTGTGTTTATCGT-----CTAGCCCAAAAGACCCAAAACTTTATCTTATCATGGATG---
---------------GGCACATGGATGCATAAACTTTAATGTTTATTAGT------------------------------
------------------CAACAAATAAACACATATACACTAGTAATGTACCAAACCGTTTGTGTAGTAGTACCATGAT-
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TTT
TTGAAGGA-----TTATACACTAGCGCCGCTAAAGAGG------------------AAAATCAA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AGCGTGTACTC
ATCCACTAAGGA-------------------------------------------------------TTTTTTTTGGATT
TTTTTTGAGGGATTGGATTTTTTGGATGAGGACTGAAGAGT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CGCACATGGGCCTCCCGTGGGTCGTATGTCCA--------------CGTAGGCGAGCCGGTAAA
AGTAAAATCCAAACGGATCGCTGCCGCGCGCGCAGGCGCAACGGTCCTG-CCACTGCTTGCCGCCTGCGCCCTCGTCCCG
TCCGCTATATATACGGGCCTGCCATC----CCCGTCACCGGCCACA-ACAATCCCCAGACTTTTCAAATCCAAA-----C
C---ACCAACTCCC--C-----------CCTCTTCTTC-----CTCC-----TCTCGTGCGATCGAGGGGATCGTCGATC
----G----A----TGGCGACAATGGGTGTGGGCGGAGCGGTGAAGATGATCGTCGGGGCGAAGGTGGAGCGGGTGGTGG
GCACGGGCAAGGCGCCCGGCGCTTGCCCGTCCTGCGGCGGTCCCGTGGTGGCGACGGACGTGGAGAGCGAGCGGCGCATC
CTGTGCCTCCCGCTGTGCCTCAAGAACAAGCGCAAGTACTCCTGCACCAGGTGCTTCCGCCGCCTCGTCACCGTCTACAG
CTAGCCGAATC-CAAGCCTATACTCCTACCG----GTCCATCCATCCATCGATCAACTAGCGTGCG--------------
---------------G----------------AGGCGAACAATCCCCGAGTTCTTTGG----------------------
---------------------------------------------------------------------TTCTTGTT---
-------------GGCCCTAGAGTAGCTT----GCTAGCCTGGCTAATGTAATTCATTCATCTAATTTCCAGACTTTCCA
GTAGCCATATC--------------TAGCTAATCTGGTGAG---------------GCGCTGCAAAACTGGCACTCTGCT
GTGTCTTGCAGCAACCTCTCTGTCAATGGTGGCGGGGCACCTCCGCGTTAATGCGCAG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>chr2D_165
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----ATAACATGCAATCAT----TCCAAACTATATAAATTTGGCATGTGCACATTTTGTCCATTTCCTAGTATTGTTTGT
TGGCAACATATACAAAGGAATTGCTGGGGCATGGTGTATCGAGACAGTCGAGAGAACAAC---TATATCTAAACTAAGAT
GTCTTCAGCCGTAGGCCCTGTTGCGCTTAATGTCTATACTAGTCCAAAAGA-CCAAAACTTTATCTTATCATGGATGCGT
ATGAAAAGCAAGATGGGCACACGCATGCATAAGCTTTTTATTATATAAGT------------------------------
------------------CAACAAATATACACGTATAGTAATGCACG-----AAACCGTTTTTGTAGTA-----------
--------------------------------------------------------------------------------
---------------------------------------------------------------AGGGTATAGTATGATTT
TTTAAAGG-----ATGTACACTAGCGCCGCTAAGGAAAAATAATACTCCGTCCGTTCCATAATGTAGTGTCTATAGATTT
TTTGAGAAGTCAAACTTTGCAAACGCTGACCAAGTTTGTAGAGAAAAATACTTATATCTACAATAGCAAATATATATAAT
GTGAAACTACATCTTATGATGAATCTAGTGATATATGTTTCACACTCTATATGTAAATATTTTTCTCCACAAACATGGTC
AAAGTTTGTGAGGTTTGACTTTTCAAAAAATCTATAGGCACTACATTATGGAACGGAGGGAGCTACTGTAGCGTGTACTC
CTCCTCTAGTTATTTTAGGCAAACTCCTCCACTAGTAATTTTTTTCAGGGGTACTCCTCCCTAGTGTTTTTTTTTGTTTT
TTTTTTGTTTTTTGGCGAAGGAGGTACTCCTCC-------C---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CGCACATGGGCCTCCCGTGGGTCGTATATCCATCG--------AGACGTAAGCCAGTCGGTGAA
AGTAAAACCCAAACGCGCGCAGGTCGTAT---A-----------TCCTG-CCCCTGCTTCCCGCCTGTGCCCTCGCCCCC
TCCGCTATATAT--GGGGCTGCCATGCCATCCCGGTACCGGCCACA-AAAATCCCCAGACTTTTGAAGGCCAAA-----C
C---ACCAACTCCC--C-----------CCTTTTCTTC-----CTCC-----TCTCGTGCGACCGAGGGGATCGTCGATC
----G----ATCGATGGCGACAATGGGCGTGGGCGGAGCGGTGAAGATGATCATCGGGGCGAAGGAGGAGCGGGTGGTGG
GCACGGGCAAGGCGCCCGGCGCGTGCCCGTCCTGCGGCGGCCCGGTGGTGGCGACCGACGTGGAGAGCGAGCGGCGCATC
CTCTGCCTCCCGCTGTGCCTCAAGAGCAAGCGCAAGTACTCCTGCACCAGGTGCTTCCGCCGACTCGTCACCGTCTACGG
CTAGAAGAATC-CAAGCCTCCGCT----CCT----ATCAATCGATCCATCCATCAACTAGCGTGCG--------------
---------------C----------------AGTAGAACAATCCCCGAGTTCTTTGG----------------------
---------------------------------------------------------------------TTCTTGTTAGT
TGGCCGTGGTTACGGTCCTAGAGTAGCTT----GCTAGCCTGGCTAATGTAATTCATTCGTCTAA---------TTTCCA
GTAGCCATATC--------------TAGCTAATCTGGTGGGCGTGCATCATGTGAAGGGCTGCAAAACTCC---------
--------CAGCAACCTCTCTGTCAATGATGGCGGGGCACCTCCGCGTTAATGCGCAGGCCAGTA-------AATGGAAA
TCTTGAACGCGCCAGCTCCTCCTTCCTGATTAAG--TTTTTT--------------------------TGAGTAATCCTT
CTTGATTAAGTATTTTTTGAGATAATCCTTCTAGATTAAGTAAGATGGTGTAATTAATTAACGCACGGCTGGGACCGACC
ATCATGGCGATCGAGTGATAAAATGCAGTCCCGGCCCACTGCCCAGTGACTAGCGTACCCATCTGTTTCTCA-AAAAAAA
AGAGTACATTGACTCGTCTCGATCGATCCCGCAAGGCTGTTCAACCTGAGCTGTTTTCTTTCCTTTTCTGGCGAAGGTTA
CAGTAACCTGTACTGA--------TAAGCAGTATAGCAGCCACAGAATCTCCGTCGCTGCGTGTACTACAGCGGTAGCTG
CCACAAATCGATGGTGAC-------------GCCCACAGGTTTTGGCCGGCACTGCAGAAGCAGCCGGCCGGCGCGCGGC
CCGTCCGTCCGTTGGTTAACTGTTCCTTTCGCGGGCAATCACGTACTACGTGGTACGAGTAAAATCCCCGCGATTC----
--------------------------------------------------------------------------------
-----------------------------------------
>chr2D_295
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TATATCTAAACTAAGAT
GTCTTCAACCGTAGGCCTTATCCCGTTCAGTGT-----CAA-TCCAAAAGACCAAAAC--TTATCTTATCATGGATGCGT
AC-AAAAGCAAGATGGGCACAAGCATGCATAAACTTCAATGTTTATTAGTAGTCTTTTTTTCTTTTGAGTGGTTCCCCGC
AATAAATGGTTTATTAGTCAACAAATAAATACACAT------------------------------GTAGTAGTATGAT-
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TTT
TTTAAAGG-----ATGTACACTAGTGCCCCTAGGGAAGAAA--------------AAAAATCAAAGGCCT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GCCACTGTAGCGTGTATTC
TTCCACTAG-----------------------------------------------------------------------
------------------------------------AGAGC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------GGCACATGGGCCTCCCGTGGGTCGTATATCCATCG--------AGACGTACGCGAGCCCGTAAA
AGTAAAACGCAAACGGGTAGCTGCCGCGCGCGCAGGCGCAGCGGTCCTA-CCCCTGCCTCCCGCCTGCGCCCTCGTCCCC
TCCGCTATATAT--------GCCTTC----CCCGGCACCGGCCACA-AAAATCCCCAGACTTTTCAAAGCCAAA-----C
C---ACCAACTCAC--C-----------CCTCTTCTTC-----CTCC-----TCTCGTGCGACCGAGGGGATCGTCGATC
----G----A----TGGCAACAATGGGCGTGGGCGGAGCGGTGAAGATGATCGTCGGAGCGAAGGAGGAGCGGGTGGTGG
CCACGGGCAAGGCGCCCGGCGCGTGCCCGTCCTGCGGCAGCCCCGTGGTGGCGACCGACGTGGAGAGCGAGCGGCGCATC
CTCTGCCTCCCGCTGTGCCTCAAGAACAAGCGCAAGTACTCCTGCACCAGGTGCTTCCGCCGCCTCGTCACCGCCTACAG
CTAGCCGATTC-CAAGCGTCTACT----CCT----ACCCATCAATCCATCGATCAACTAGCGTGCG--------------
---------------G----------------AGTCGAACAATCCCCGAGTTATTTGG----------------------
---------------------------------------------------------------------TTC---TTTGT
TGGCCGTGGTTACGGTCCTAGAGTAGCTT----GCTAGCCTGGCTAATGTAATTCATTGATCTAA---------TTTCCA
GTAGCCATATC--------------TAGCTAATCTGGTGGGCGTGCATCACGTCGATCGCTGCAAAACTGGCACTCTGCT
GTGTCTTGCAGCAACCTCCCTGTCAATGGTGGCGGGGCACCTCCGCGTTAATGCGCAGGCCAGTA-------A-TGGAAA
TTTCGTACGCGCCAGCTCCTCCTTCTTGATTAAG--TTTTTT--------------------------TGAGTAATCCTT
CTTGATTAAGTA-----------------------------AGATGGTG-----T-ATTAACGCACGGCTGGGACCGACC
ATCATGGTGAGCGA----TAAAATGCAGTCCCGGCCCACTGCCCAGTGACTAGCGTACCCCTCTGG-TCTCAGAAAAAAG
AGAGTACATTGACTCGTCTCGATCGATCCCACAAGGCTGTCCAACCTGCGCTATTTTCTTTCCTTTTTT-GCGAAGGTTA
CAGTAGCCTGTACTGA--------TAAACAGCATAGCAGCCACAGAATCTCCGTCGCTGCATGTATTACAG---------
---------------------------------------GTTTTGGCTGCCACTGCAGAAGCTGCCGGCCGGCGCGCGGC
CCGTCCGTCCGTTGGTTAACTGTCCCTTTCGCGGGCAATCACGTACGTC---GTACGAGTAAAATCCCCGCGATTC----
--------------------------------------------------------------------------------
-----------------------------------------
>chr2D_894
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CCGG------------------------------CACCGGCCACTCAAAATCCCCAGACTTTCCAAGCCCAAAATCAAA
A---TCCCACCTCT--C---TCCGATCCCCCCTTCTTCCTCCTCTCGTTTCGTTTCTTGCGGCCGAGGGGATCGTCGATC
----GATCCA----TGGCAACAATGGGCGTGGGCGGAGCGGTGAAGATGATCATCGGGGCGAAGGAGGAGCGGGTGGTGG
CCACGGGCAAGGCGCCCGGCGCTTGCCCGTCCTGCGGCGGCCCCGTGGTGGCGACCGACGTGGAGAGCGAGCGGCGCATC
CTCTGCCTCCCGCTGTGCCTCAAGAGCAAGCGCAAGTACTACTGCACCAGGTGCTTCCGCCGCCTCGTCACCGTCTACAG
CTAGTAGCTCATCAAGCCTCTCCTCATGCCGATCCATCCATCCATCCATCGATCAACTAGCGTGCG--------------
---------------G----------------AGT----------------TCTTTGG----------------------
---------------------------------------------------------------------TTC---TTAGT
TGGCCGTGGTTACGGCCCTAGAGTAGCTT----GCTAGCCTGGCTAATGTAATGTAATGGTGATTCTGAGTTAATTCTTC
T-----ATATC--------------TAGCTTATTTGGTGGGCGTGCATCCCGTGAAGGGCTGCAAAACTGGCACTCTGCT
GTGTCTTGCAGCAACCTC-----------TGGCGGTGCACCTCCGCGTTAATGCGCAGGCCAGTA-------A-TGGAAA
CCTGGAACGCGCCAGCTCCTCCTTCCTGATTAAGTTTTTTTT--------------------------TGAGTAATCCTT
CTTGATTAAGT-TTTTTTGAGATATTCCTTCTTGGTTAAGTAGATGGTG-----TAATTAACGCACGGCTGGGACCGACC
ATCATGGTGAGTGA----TAAAATGCAGTCCGGGCCCACTGCCCAGAGACTAGCGTACCCGTCTGTTTCTCAAAAAAAAT
AGAGTACATTGACTCGTCCCGATCGATCCCCCAAGG-------ACCTGCGCTGTTTTCTTTCCTTTTTT-GCGAAGGTTA
CAGTAGCCTGTACTGA--------TAAACAGCATAGCAGCCATAGAATCTCCGTCGCTGCATGTACTACAGTGGCAGCTG
CCACAGATCGATGGTGAC-------------GCCCACAGGTTTTGGTTGCCACTGCAGAAGCAGCCGGCCGGCGCGCGGC
CCGTCCGTCCGTTCGTTAACTGTTCCTTTCGCGGGCAATCACGTAC----------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>chr2A_894
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CCGG------------------------------CACCGGCCAGTCAAAATCCCCAGACTTTCCAAAGCCAAA-----A
T---CCCACCTCCCTCC---TCCGATCCCCCCTTCTTCCTCCTCTCG-----TTTCTTGCGGCCGAGGGGATCGTGGATC
TATCG----A----TGGCAGCAATGGGTGTGGGCGGAGCTGTGAAGATGATCTGCGGGACGAAGGTGGAGCGGGTGGTGG
GCACGGGTAAGGCGCCCGGCGCGTGCCCGTCCTGCGGCGGCCCCGTGGTGGCCACGGACGTGGAGAGCGAGCGGCGCATC
CTCTGCCTCCCGCTGTGCCTCAAGAGCAAGCGCAAGTACTCCTGCACCCGGTGCTTCCGCCGCCTCGTCACCGTCTACAG
CTAGTAGCTCCTCAAGCTTCTTCCGGTACTG----ATCTATTCATCCGTCGATCGGTCGGCTAGCGACGTGCGAGGCCAA
TCAGTTAATCGT--------------------------------CCCGGGTTCTTTTG----------------------
---------------------------------------------------------------------TTGTTCTTC-T
TGGCCGTGGTTACGGCCCTAGAGCAGCTT----GCTAGCCTGGCTAATGTAATGTAATGGTGATTCTGTGTTAGTTCCAG
TTCTTCAGTACACAAATGATAATCGTAGCTAATTTGGTGGGCGCGCATCACGTGGAGCGCTGGAAAACTGGCACTCTGCT
GT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>chr2A_894
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CCGG------------------------------CGCCGGCCACTCAAAATCCACAGACTTTCCAAGGCAAAA-----A
A---TCCCATTTCC--CTACTCCGATCACCC--TCTTC-----TTTC-----TTTCCTGCGACCGAGGGGATCGTCGATC
----G----A----TGGCAACAATGGGCGTGGGCGGAGCGGTGAAGATGATCGTCGGGGCGAAGGTGGAGCGGGTGCTGG
CCACGTCCAAGGCGCCCGGCGCTTGCCCGTCCTGTGGCGGCCCCGTGGTGGCGACCGACGTGGAGAGCGAGCGGCGCATC
CTGTGCCTCCCGCTGTGCCTCAAGAACAAGCGCAAGTACTCCTGCACCAGGTGTTTCCGCCGCCTCGTCACCATCTACAG
CTAG------ATCAAGCTTCTTCCAGCAG-T----ATCGATCTGTCCATCCTTCGAATAGCCGCGTAGGGA----GCCAA
TCAGTTAATCCGCTCG----------------AGT----------------TCTTTGG----------------------
---------------------------------------------------------------------TTC---TTC-T
TGGCCGTGGTTACGGCCCTAGAGTAGCTT----GCTGGCCTGGCCAATGTAATGGGGA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TTCTGTGTTAATTCTTCTA-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>SNPs
---S----------------------------------------------------------------------------
---------S-----S---------------------------------------S------------------------
------------SS-----------------------------------------------------S----------S-
-----------------------------S--------------------------------------------------
-------------------------------------------------------------S------------------
---------------------------------------------S---S------------------------------
--------------------------------------------------------S--------------S--SSSS-S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----SS----S--SS--
----------------------------------S------S--S--SSS-SS-S---S-S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S----------S---------SSSSSSSSS---------------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
-SSS--------------------------------S------------------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S-SS-S-SSSSSSS--------
--------------------------------------------------------------------------------
------------------------------------S-S-------------S-------------S-------------
-------------------------------S-----------------------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
------------------SSSSSSSSSSSSS-------------------------------------------------
-------------------S--------------------------------------------------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_718
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------AACGGAGGGAGTAGTGTGGA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>reverse_3005
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CATCGGAAGGCTTTGGTCCT----------------
-----------------------------------------
