>input_sequence_86380
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----------------------------------------------------------------------------ATGG
CTGGGGTGGTCGGCGTCTGGTTCGCCAAGTTCGGCCGGGAGGCGGCGCCGGCGGCAGAGGCAGAGGCCGAGGTCGTCGGC
CGGCGACACCAGGGCGACGGCCTGCTCGAGGTGGAGGCCGTGAAGAAGGGCGGCGTGCAGATCCAGGAGAGGAGGAGGAG
GACCAGCGCCGTCCTCGCCAACTCCGAGGACACGGTGTGCATGCTCATGGACCGCTTCGCCCCGGCCTGA----------
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---------------------------------------------------
>chr5A_1_TraesCS5A01G403000
GTCAGGTCCGTTTTCATGATGGTCCCTGGATGGGAAAAAAGTTCGTTTTCGTGGGTACGAGTACGATCGATCGAGACGGT
GCAGCCAAGTGGGAGGGGAGATGTAATTCATTACCACCACTCGGGCGGCTGAAGTAGTAGCGAAATATCTCTCTTCGCCG
AGATATTTTGCTTCAAAATTGTTGCCATGCATACTGAACGTTTTCTCTGAACCTCAACGTTCCAGTTGCTCCTGCACCTC
GCAAAACGTTC-GACCTCTGGCGCGGCCCGCGATCCGGA------GCATAAACCTTGCTCAGATTCTTCGATTCCCCGGA
TCAAATGCTACGTCCGGGTGGTGCGG--------CGAACCTGGATGGCAGAACCATGCGGGCACGGGGCGCGGTGAGCAC
GTACGTGAGGGCGATGGTCCGCGTCGCCGGCCGCTGCACTTGCACCCGCCCCAGGG-CAGTCAATAGTCAC--CGCGCGC
GCAGCATCCTGGCAGCGGCATCTCTCCCCGGATCCGCCCGCGCGCCGAATCAATGGTACGCGCGAGGATATCCCCTCCCC
TCTCCACCGCGCGCGCGACGGCAGCCTCACGTTCATTAGCTTGGCCTCCGATCGCGCGTCGCGCCGCGCCGTGCGTCACA
TGGCAAATGCACGGCACGGCATGGGCCTGCGCCCCAACGGACAAAGCCGATGAGCTGTGGCCGCTCGCCCGCCACTCGGC
GGCACCCAAACAAAACACCGGCCCGAGGAGGCGCCTACCGTTCCGCCCCGCGCGCAGTTTCCTCCACTTTTCCCACCGGC
AGTGGCAGGCAGCTCGCGAGTGCAT---GCCAATAGCCGGTGCCTTCCTTCACACCTGCGAGCTGTATAAGTAGAGCCGG
GCACCCAGAGTTAAAGGAACGCCCACTCAT---------CCAAGCAGTGAAAGAGAAGAAGCTAATCAAG-CTCAACAGC
CTTCTTTTCCATCGAGTGTGTG-----CGTAGCAGACCCAAGAGTTAGAGAATCCAAGAAGAGTGTGGACCTAGCCATGG
CTGGGGTGGTCGGCGTCTGGTTCGCCAAGTTCGGCCGGGAGGCGGCGCCGGCGGCAGAGGCAGAGGCCGAGGTCGTCGGC
CGGCGACACCAGGGCGACGGCCTGCTCGAGGTGGAGGCCGTGAAGAAGGGCGGCGTGCAGATCCAGGAGAGGAGGAGGAG
GACCAGCGCCGTCCTCGCCAACTCCGAGGACACGGTGTGCATGCTCATGGACCGCTTCGCCCCGGCCTGATGCGCCGGTG
AACCGGCGGTGTCCGTACGTACGTGTAAATTCCAGGGCACGTACGTCCGTAGGGGCGCGGGCACAAGGGAGGAATCTATA
CCTTGTGCTGTGA---------------TTGTACATAAGCTTTTTTTCATCGCTAATCGAGTGATCGTAGTAGTACTGTA
GTAGTGCTCATGCCTTCCGTTAAAAAAAAGG--ATAAATAAATTATGCGGCCAGTTGAATCAACTGTATCATATCATGTG
CTCCTAT---GTATGACTGTATCCTTTGAATGGATT-GTTTGGTTTCTATGGCATCTCTGTTGCTGCTGCTGCTTTTTCT
TAGTTGGTGTTGGTGCTGCTTTTGGTGATTGTTCGACTATGTATAGCTTCTGTACCTATGTACGTATATGGTACATATTG
TAACACAACCATTATATATAATGAGATAAGCCACCCCTAGAGGGTTGTGCTGGTTCCCCAAAACTTATTGTCTTACATGG
TATCAGAGCAACCAGGCGGCTGTTTCATATAAACCTCTTCCTCCAAAAATCCATGTAGAAAAGCATTCTGCACATCAAGT
TGACGAAGTGACCAACCACGAGAAACAGCAATGGAGAGAAGAAGCCGAATAGTGGTAGGCTTGACGACAGGACTGAAGGT
GTCCTCATAGTCAAGACCATGACGCTGCCGAAAACCGCGAGCAACAAGTCGCGCTTTGTAACGCTTAATAGATCCATTTT
GAGTCAATAACATTTACCCGTGGTGGTGGAGGAACGAGAGTCCATGTCTTGTTACGAAGAAGAGCATGAAACTCCTGCTC
CATAGCCTCTCCGTCACAGTGGCATGCTCGTCTTGGTCACCCGGCCACACCTATTGTCCGTCATATTTTGCGTCGTCATG
AGCTTCCTAGTTTGTCTAGTCATAAAGATGTAGCAGTGTGTGATGCTTGTCAGCAGGGGAAGAGTCATCAACTTCCTTTT
TCGGAGTCCAGTCGTGAGGTGAAACATCCTTTAGAACTTGTGTTTTCAGAT
>chr5B_185
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------------------------CCATGCATACTGAAAGTTTTCTCTGAACCTCAACGTTCCCGCTGCTGCTGCACCTC
ACAAAACGTTCCGATCTCTGGCGCGCCCCGCCATCGGC------GGCATAAACCTTGCTCAGATTCTTCGATTCCCCGGA
TCAAATACTACGTCCGGGTGGTGCAG--------CGAACCTGGACTGCACAACCATGCGAGCACGGGGCGCGGTGAGCAC
GTACGTGAGGGCGACGGTCCGCATCGCCGGCCGCTGCACTTGCACCCGCCCCCGGG-CAGTCAGTGGTCACCGCGCGCGC
GCAGCATCCTGGCAGCGGCATCTCTCTCCGGATCCGCCCGCGCGCGGAATCAATCGTACGCGCGAGGATATCC-----CC
TCTCCACCGCGCGCGCGACGGCAGCCTCACGTTCATTAGCTTGGCCTCCGATCGCGCGTCGCGCCGCGCCGTGCGTCACA
TGGCAAATGCACGGCACGGCATGGGCCTGCGCCGCAACGGACAAAGCCGATGAGCTGTGGCCGCTCGCCCGCCACTCGGC
GGCACCCAAACAAAACACCGGCCCGAGGAGGCGCCTACCATTCGGCCCCGCGCGCAGTTTCCTCCACTTTTCCCACTGGC
AG-------CAGCTCGCGAGTGCCG---GCCGATT---GGTGCCTTCCTTCACACCTGCGAGTTGTATAAGTAGAGCCGG
CAACTCAGAGTTAAAGGAACACCCACTCAT---------CCAAGCAGTGAAAGAGAAGAGGCTAATCAAG-CTCAACAGC
CTTCTTTTCCAGAGAGTGTGCTGTGTACGTAGCAGAGCGAAGAGTTAG------------------------AGCCATGG
CTGGGGTGGTCGGCGTCTGGTTCGCCAAGTTCGGCCGGGAGGCGGCGCCGGCGGTAGAGGCAGAGGCCGAGGTCGTCGGA
CGGCGACACCAGGGCGACGGCCTGCTCGAGGTGGAGGCCGTGAAGACG------GTGCAGATCCAGGAGAGGAGGAGGAG
GAACAGCGCCGTCCTCGCCAACTCCGAGGACACGGTGTGCATGCTCATGGACCGCTTCGCCCCGGCCTGATGCGCCGGTG
AACCGGCGGTGTCCGTACGTACGTGTAAATTCCAGGGCACGTA----CGTAGGGGCGCGGGCACAAGGGAGGAGCCATAC
CTTGATGTGC---------GGGTTCCTCTTGTACATAAGCTCTTTTTCATCGCTAATCGAGTGATAGTA--------GTA
GTAGTGCTCATGCCTCCCGTTAAAAAAAAG---ATAAATAAATAAAGCGCCCAGTCGAATCAACTGTATCATATCATGTA
CTCCTATGTAGTATGACTGTATCCTTTGAATGGATTCGTTTGGTTTCTATGGCATCTCTGTTGCTGCTGCTGCTTTTTCT
TAGTTGGTGTTGGTGCTGCTTTTGGTGAT---------------------------------------------------
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>chr5D_185
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------------------------CCATGCATACTGAACGTTTTCTCTGAACCTCAACGTTCCCGCTGCTGCTGCACCTC
ACAAAACGTTCCGACCTCTGGCGCGCTCCGCGGACCGCGGATCGGGCATAAACCTTGGTCAGATTCTTCGATCCCCCGGA
TCAAATACTACGTCCGCGTGGTGCAGGCGTGCAGCGAACCTGGACGGCACAACCATGCGGGCACGGGGCGCGGTGAGCAC
GTACGTGAGGGCGACGGTCCGCGTCGCCGGCCGCTGCACTTGCACCCGCCCCCGGGGCAGCCAGTAGTCAC--CGCGCGC
GCAGCATCCTGGCAGCGGCATCTCTCTCCGGATCCGCCCGCGCGCGGAATCAATCGTACGCGCGAGGATATCC-----CC
TCTCCACCGCGCGCGCGACGGCAGCCTCACGTTCATTAGCTTGGCCTCCGATCGCGCGTCTCGCCGCGCCGTGCGTCACA
TGGCAAATGCACGGCGCGGCATGGGCCTGCGCCGCAACGGACAAAGCCGATAAGCTGTGGCCGCTCGCCCGCCACTCGGC
GGCACCCAAACAAAACACCGGCCCGACGTGGACCA--------GGCCCCGCGCGCAGTTTCCTCCACTTTTCCCACTGGC
AG-------CAGCTCGCGAGTCGTGAGTGCCAATG---GGTGCCTTCCTTCACACCTGCGAGCTGTATAAGTAGAGCCGG
GCACCCAGAGTAAAAGGAACATCCACCCAACACCAACACCCAAGCAGTGAAAGAGAGGAAGCCGGAGCTACCTCAAGAGC
CTTCTTTTCCAGCGAGTGTGCTGTGTACGTAGCAGAGCGAAGAGTTAG------------------------AGCAATGG
CTGGGGTGGTCGGCGTCTGGTTCGCTAAGTTCGGCCGGGAGGCGGCGCCGGCGGCAGAGGCCGAGGCCGAGGTCGTCGGC
CGGCGACACCAGGGCGACGGCCTGCTCGAGGTGGAGGCCGTGAAGACG------GTGCAGATCCAGGAGAGGAGGAGGAG
GAACAGCGCCGTCCTCGCCAACTCCGAGGACACGGTGTGCATGCTCATGGACCGCTTCGCCCCGGCCTGATGCGCCGGTG
AACCGGCGGTGTCCGTCCGTACGTGTAAATTCCAGGGCACGTA----CGTAGGGGCGCGGGCACAAGGGAGGAGTCTATG
CCTTGTGCTGTGGTTGTGTGGGTTCCTCTTGTACATAAGCTCTTTTTCATCGCTAATCGAGTGATCGTA--------GTA
GTAGTGCTCATGCCTTTCGTTAAAAAAAGGATAATAAATAAATTATGCGGCCAGTTGAATCAACTGTATCATATCATGTA
CTCTTAT---GTATGACTGTATCCTTTGAATGGATTCGTTTGGTTTCTATGGCATCTCTGTTGCTG---CTGCTTTTTCT
TAGTTGGTGTTGGTGCTGCTTTTGGTGAT---------------------------------------------------
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---------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------S-S----S---------
S------------------------S-----------SS-----------------------------------------
------S-----------------S-------------------S----S------------------------------
--------------S-------------------------------------S----------S----------------
--------------------------S------------------S--------S------------------SSSSS--
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---------------------------------S----------------------------------------------
---------------------------------------S---S--------------------------------S---
--SSSSSSS--------------SS---------SSSS------------------------------------------
--------------------S-----------------------------------------------------------
-----------S--------SS--------------S-S---------SSSSSSSSSSSSSSSSSSSSSSSS--------
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----------------------------------------------S-SSSSSS--------------------------
--S-----------------------------------------------------------------------------
-------------------------------------------SSSS--------------------------S-----S
------------S----------------------------S---------------------------SSSSSSSS---
------------------------------S------------------------------------------------S
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-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_126
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--------------------------TTCATTACCACCACTCGGGC----------------------------------
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>reverse_1950
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-----------------------------GAAAACCGCGAGCAACAAGT-------------------------------
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---------------------------------------------------
