>input_sequence_86370
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----------------------------------------ATGGGCTGCAAGGAACCATACACCAATGCAGAGATGCTGC
CTATGAGTGCTTGCTTCCACTCTGGTGCATTCATTGCAAGAAGCCTGGAGAAAGACGGTGCAGGTGGGGAAACATATGAC
TCGGTTTCCTTTGAAACACCTGGCGTGAGTGGCATGGGACTTGCTCTGGACATGCTGAGACGGCTGGCACTGGTCCTTGC
TGCTGAGGAGGCTCTAAATTGGTCAGTTTCTTGA----------------------------------------------
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>chr3D_1_TraesCS3D01G285200
GTAGCCATGTTAGTATTTTATCTTACAGCAATCTAGCATCCTAAAAATCATTATTTTCTGCGAGGCTGCTGATTTTTATT
CCATACAATGCTCATGAGAGTATGAATGTGTTACCTGTGAATTTTGCGGAGAGATAGATTTCCTATCTAGCACCTCGAAA
ACTGAAGCAACGGCATTTGATCCCTTTGCCAGGTCAGATGTCATGCTGCCAGCATCAGCAATCAGCTTTCCTGTGCTCAC
CAAGACGAAGAAGGTTTTGAAGACATCACCTGCTGAGATCTCCCCGGACTGTGCCAATTTCCCACCATACCAGAAGTCCA
ATGCCCATGATAAGAATGTGAGGCACGGTGACAGCCCTGTGGTTATCCCTGCTACCCATGACTTCTTCCTTGCTTTCCTC
AATGGTTCCTCTTGTGTATGCTCGAAGAGCTGAAGAATCTTTGATGAACATCCAAATGAGGTCACCATCCTGTGGTTGTA
AACAGCTTCTATGGCAATCTGAGTACTTTCATACTGAGCCTTTGCCAAGTCCCTTGACACATTTGAAAGAACTATCTTCT
TGGCATAGTAGCATATCATCGTGCAGGGCTGTACAGCAATCATGACAAGGGCAAGTTTCCATGCTACTATGAGTCCCATT
GTCACCGCAATTACAATTCCACAGGCTGTTTGAAGAAGCAGAGAGATCCTGTCTGCGACAAGGGTTTTGACAAGAGAAGA
CTCGTCACTTAGCCGAGAGCACAACGAGCCACTTGAATTTGTGTCCTCATCAAACCATGCTGCCTCAAAGGTTAAGATCT
TCTCTAGCACTTGGACTCGGATACGCCTAACAAGATGCTCCCCCATGTAGGCAAAATTGTAGTGTTGCAATAGATTAACA
GCAATGGATACCAGGGATAGTGAGCAAAAGATCAATGCATAGCGGCTGATGATTGCATTCATCTCATTGTGGTCCTGAAC
AAAGAATGCAGCAATCATTCCTCCGATGGTTAGAGCATAGATGGGCTGCAAGGAACCATACACCAATGCAGAGATGCTGC
CTATGAGTGCTTGCTTCCACTCTGGTGCATTCATTGCAAGAAGCCTGGAGAAAGACGGTGCAGGTGGGGAAACATATGAC
TCGGTTTCCTTTGAAACACCTGGCGTGAGTGGCATGGGACTTGCTCTGGACATGCTGAGACGGCTGGCACTGGTCCTTGC
TGCTGAGGAGGCTCTAAATTGGTCAGTTTCTTGATCTATGTAGCTCACCATCTTCTGCAATTTCACAAGTCGTGAGTATG
GGCCACCCTTGTTGATCAGCTCATCATGTGTCTCAATTTCAGCTATGCTGCCCCCATCGACTACCGCGATTTGATCGGCA
TTCTTCACAGTGGAAAGCTTGTGAGCTACGACCTGGTCAGTATGAAGGTATAAATAATGAGTGCTACAGTGCCAAAGGAT
TCAGGAAATCCTAAGCT--TAGCATTCTAAAGTAGGAAGAGCCGAGGCAGTCAATATACCAGTGTTGTTCTTCCCATGGA
TGCTTGATCAAGTGCATGCTGCACTAGCTTCTCCGACTCTGAGTCAAGTGCGCTTGTGGCTTCATCAAGCAAAAGTATAG
CAGGGTTCTTGAGGACCGCCCTTGCAATGGCAATGCGCTGTTTCTGGCCACCTGATAGCAATGCTCCGCGCTCACCAATC
TGCAAGTACAGTGAAATCACCAATAAGGCAAGGGAGACAGGTTATTAAGGCGCCTGAATGT----TCTGTTTCCTTATGA
TGAACATACCTTAGTCTCATATCCCTCAGGAAGCCCCATTATGAAGTTGTGAGCATTCGCTGTCATGGCTGCTGCATAGA
GTTCATCCATGGTTGCATCTGGTTTGCCGAATAAGATGTTCTCTTTTATGGATGTGCCGAACAGTGCATGATCTTGGCTG
ACAAGTCCCATCTTGCTCCTAATCGACTTGAGATTAAGTTTCTTGATGTCGACACCGTCGATCTTGACAGTTCCTTCACT
GGCATCGTAAAAGCGCTGCACCAGTGCTATTGCGGTAGACTTGCCGCTGCCACTTGAGCCGACCAAAGCAATTGTTTGGC
CAGCAGGAATCTGGAGGTTGAAGTCTTTGAGGACTGTCATATTAGGCCTGGACGGGTACACAAAGCGGATGGATTCGAAC
TCAATCTCTCCATGGACTTGATCCAGAACAAGGCCCTTTGGGTCATCATCGTTGATCTGGGGCACACGGTTGATCCGTTC
>chr3B_1
GTAGCCATGTTAGTATTTTATCTTACAGCAATCTAGCATCCTAAAAATCATTATTTTCTGCGAGGCTGCTGATTTTTATT
CCATACAATGCTCATGAGAGTATGGATGTGTTACCTGTGAATTTTGCGGAGAGATAGATTTCCTATCTAGCACCTCGAAA
ACTGAAGCAACGGCATTTGATCCCTTTGCCAGGTCAGATGTCATGCTGCCAGCATCAGCAATCAGCTTTCCTGTGCTCAC
CAAGACGAAGAAGGTTTTGAAGACATCACCTGCTGAGATCTCCCCGGACTGTGCCAATTTCCCACCATACCAGAAGTCCA
ATGCCCATGATAAGAATGTGAGGCACGGCGACAGCCCTGTGGTTATCCCTGCTACCCATGACTTCTTCCTTGCTTTCCTC
AATGGTTCCTCTTGTGTATGCTCGAAGAGCTGAAGAATCTTCGATGAACATCCAAATGAGGTCACCATCCTGTGGTTGTA
AACAGCTTCTATGGCAATCTGAGTACTTTCATACTGAGCCTTTGCCAAGTCCCTTGACACATTTGAAAGAACTATCTTCT
TGGCATAGTAGCATATCATCGTGCAGGGCTGTACAGCAATCATGACAAGGGCAAGTTTCCATGCTACTATGAGTCCCATT
GTCACCGCAATCACAATTCCACAGGCTGTTTGAAGAAGCAGGGAGATCCTGTCTGCGACAAGGGTTTTGACAAGAGAAGA
CTCGTCACTTAGCCGAGAGCACAACGAGCCACTTGAATTTGTGTCCTCATCAAACCATGCTGCCTCAAAGGTTAAGATCT
TCTCCAGCACTTGGACTCGGATACGCCTAACAAGATGCTCCCCCATGTAGGCAAAATTGTAGTGTTGCAATAGATTAACA
GCAATGGATACCAGGGACAGTGAGCAAAAGATCAATGCATAGCGGCTGATGATTGCATTCATCTCATTGTGGTCCTGAAC
AAAGAATGCAGCAATCATTCCTCCGATGGTTAGAGCATAGATGGGCTGCAAGGAACCATACACCAATGCAGAGATACTGC
CTATGAGTGCTTGCTTCCACTCTGGTGCATTCATTGCAAGAAGCCTGGAGAAAGACGGTGCAGGTGGGGAAACATATGAC
TCGGTTTCCTTTGAAACACCTGGTGTGAGTGGCATGGGACTTGCTCTGGACATGCTGAGACGGCTGGCACTGGTCCTTGC
TGCTGAGGAGGCCCTAAATTGGTCAGTTTCTTGATCTATGTAGCTCACCATCTTCTGCAATTTCACAAGTCGTGAGTATG
GGCCACCCTTGTTGATCAGCTCATCATGTGTCCCAATTTCAGCTATGCTACCCCCATCGACTACCGCGATTTGATCGGCA
TTCTTCACGGTTGAAAGCTTGTGAGCTACGACCTGGTCAGTATTAAGGTATAAATAATGAGTGCTACAGTGCCAAAGGAT
TCAGGAAATCCTAAGCT--TAGCATTATAAAGTAGGAAGAGCCGAGGTAGTTAATATACCAGTGTTGTTCTTCCCATAGA
TGCTTGATCAAGTGCATGCTGCACTAGCTTCTCCGACTCTGAGTCAAGTGCGCTTGTGGCTTCATCGAGCAAAAGTATAG
CAGGGTTCTTGAGGACCGCCCTTGCAATGGCAATGCGCTGTTTCTGGCCACCTGATAGCAATGCTCCGCGCTCACCAATC
TGCAAGTACAGTGAAATCACCAATAAGGCAAGGGAGACAGGTTATTAAGGCACCTGAATGT----T----TTCCTTATGA
TGAACATACCTTAGTCTCGTATCCCTCAGGAAGCCCCATTATGAAGTTGTGAGCATTCGCTGTCATGGCTGCTGCATAGA
GTTCATCCAAGGTTGCATCTGGTTTGCCGAATAAGATGTTCTCTTTTATGGATGTGCCGAACAGTGCATGGTCTTGGCTG
ACAAGTCCCATCTTGCTCCTAATCGACTTGAGATTAAGTTTCTTGATGTCGACACCGTCGATCTTGACAGTTCCTTCACT
GGCATCGTAAAAGCGCTGCACCAGTGCTATTGCGGTAGACTTGCCGCTGCCACTTGAGCCGACCAAAGCAATTGTTTGGC
CAGCAGGAATCTGGAGGTTGAAGTCTTTAAGGACCGTCATATTAGGCCTGGATGGGTACACAAAGTGGATGGATTCAAAC
TCGATCTCTCCACGGACTTGATCCAAAACAAGCCCCTTTGGATCATCGTCGTTGATCTGGGGCACACGGTTGATCCGTTC
>chr3A_1
GTAGTCATGTTAGTATTTCATCCTACAGCAATCTAGCATCCTAAAAATC-----TTTCTGCGAGGCTGCTGA-TTTTATT
CCATACAATGCTCATGAGAGTATGAATGTGTTACCTGTGAATTTTGCGGAGAGATAGATTTCCTATCTAGCACCTCGAAA
ACTGAAGCAACGGCATTTGATCCCTTTGCCAGGTCAGATGTCATGCTGCCAGCATCAGCGATCAGCTTTCCTGTGCTCAC
CAAGACGAAGAAGGTTTTGAAGACATCACCTGCTGAGATCTCCCCGGACTGTGCCAATTTCCCACCATACCAGAAGTCCA
ATGCCCATGATAAGAATGTGAGGCACGGCGACAGCCCTGTGGTTATCCCTGCTACCCATGACTTCTTCCTTGCTTTCCTC
AATGGTTCCTCTTGTGTATGCTCGAAGAGCTGAAGAATCTTCGATGAACATCCAAATGAGGTCACCATCCTGTGGTTGTA
AACAGCTTCGATGGCAATCTGAGTACTTTCATACTGAGCCTTTGCCAAGTCCCTTGACACATTTGAAAGAACTATCTTCT
TGGCATAGTAGCATATCATCGTGCAGGGCTGTACAGCAATCATGACAAGGGCAAGTTTCCATGCTACTATGAGTCCCATT
GTCACCGCAATTACAATTCCACAAGCTGTTTGAAGTAGCAGGGAGATCCTGTCTGCGACAAGGGTTTTGACAAGAGAAGA
CTCGTCACTTAGCCGAGAGCACAATGAGCCACTTGAATTTGTGTCTTCATCAAACCATGCTGCCTCAAAGGTTAAGATCT
TCTCAAGCACTTGGACTCGGATACGCCTAACTAGGTGCTCCCCCATGTAGGCGAAATTGTAGTGTTGCAGTAGATTAACA
GCAATGGATACCAGGGACAGGGAGCAAAAGATCAATGCATAGCGGCTGATGATTGCATTCATCTCATTGTGGTCCTGAAC
AAAGAATGCAGCAATCATTCCTCCGATGGTTAGAGCATAGATGGGCTGCAAGGAACCATATACCAATGCAGAGATGCTTC
CTATGAGTGCTTGCTTCCACTCTGGTGCATTCATTGCAAGAAGCCTTGAGAAAGACGGTGCAGGTGGGGAAACATATGAC
CCGGTTTCTTTTGAAACACCTGGTGTGAGTGGCATGGGACTTGCTCTGGACATGCTGAGACGGCTGGCACTGGTCCTTGC
TGCTGAGGAGGCCCTAAATTGGTCAGTTTCTTGATCTATGTAGCTCACCATCTTCTGCAATTTCACAAGTCGTGAATATG
GGCCACCCTTGTTGATCAGCTCATCATGTGTCCCAATTTCTGCTATGCTACCCCCATCGACTACCGCGATTTGATCGGCA
TTCTTCACGGTCGAAAGCTTGTGAGCTACGACCTGGTCAGCATTAAGGTATAAATAATGAGTGCTACAGTGCCAAAGGAT
TTGAGAAATTCTAAGCTTATAGCATTCTAAAGTAGGAAGAGCTGAAGCAGTCAATATACCAGTGTTGTTCTTCCCATAGA
TGCTTGATCAAGTGCATGCTGCACTAGCTTCTCTGACTCTGAGTCAAGTGCGCTTGTGGCTTCATCGAGCAAAAGTATAG
CAGGGTTCTTGAGGACCGCCCTTGCAATGGCAATCCGCTGTTTCTGGCCACCTGATAGCAACGCTCCACGCTCACCAATC
TGCAAGGACAGTGAAATCACCAATAAGGCAAGGGAGACAGGGAATTAAGGCCCTTGGATGTTTTGT----TTCCTTATGA
TGAACGTACCTTAGTCTCATATCCCTCAGGAAGCCCCATTACGAAGTTGTGAGCATTTGCTGTCATGGCTGCTGCATAGA
GTTCATCCATGGTTGCATCTGGTTTGCCGAATAAGATGTTCTCTTTTATGGATGTGCCGAACAGTGCATGATCTTGGCTG
ACAAGTCCCATCTTGCTCCTAATCGACTTGAGATTTAGTTTCTTGATGTCGAAGCCGTCGACCTTGACAGTTCCTTCACT
GGAATCGTAGAAGCGCTGCACCAGCGCTATTGCGGTAGACTTGCCGCTGCCACTAGAGCCGACCAAAGCAATTGTTTGGC
CAGCAGGAATCTGGAGGTTGAAGTCTTTGAGGACCGTCATATTAGGCCTGGATGGGTACGCAAAGTGGATGGACTCAAAC
TCGATCTCTCCACGGACTTGATCCAAAACAAGCCCCTTTGGGTCATCGTCGTTGATCTGGGGCACACGGTTGATCCGTTC
>SNPs
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----------------------------S---------------------------------------------------
-----------------------------------------S--------------------------------------
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-----------------------------------------S--------------------------------------
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----S---------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
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-----------------------S--------------------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------S----------------S------------------------------
--------S--S-------------------------------S------------------------------------
-----------------------------------------------------------------------------S--
------------------------------------------------------------------S-------------
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---------------------------------------------------S--------------SSSS----------
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----------------------------------S-----------------S------------S----------S---
--S---------S------------S------S--------------S--------------------------------
>forward_898
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-----------------------------------------------------------------------------ACA
GCAATGGATACCAGGGAT--------------------------------------------------------------
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>reverse_2208
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-----------------------------------------------ATCGTTGATCTGGGGCACAC-------------
