>input_sequence_86360
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---------------------------------------------------------------------------ATGGA
CGCCCTGCAGGAATGGTGGCCTGACGCTCGTCGCCGACTCTCAAAACTGGCACGCAAAGGTTTCGACAGCATCGTGCTCC
TCATCGTGTGGAGCCTATGGATCGAGCGCAACGCCCGGACATTTGACAAC----------TCGCTGGGCACGGCCGCGCA
CGTGTGCACCGGCATTGTGGCTGAAGCCGACTTATGGAGTAAAGCTGGCGCTGTGGGGTTGCAATCCTTCTTGAGATAA-
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>chr2D_1_TraesCS2D01G117600
AGCCGCAACATCTCCAGGTCATCAGTGATGCCTTCCCGTGCCAGGTCGCCCACTTCCCGTGCCGATACCTGGGGCTCCCC
TTATCCTACAAGCTCCCGTCAAAGGCAGCGCTGCAACCAGTCCTCGACAAGATCCTCAATCGCATACCCACATGGAAGGC
GCGCCTGATGTATCGCACTGGCCGTTTGGTACTTGTCAAAGTGGTTCTGGCAGCAATCC-GGCCTTCCACTCGATCGCCA
TGGAGCTCCCATCATGGTTCATGAAGACTTTCGAGCAAAAGATTCGGGCTTTCCTCTGGGCCGGGTCCGACTCAGTGAAC
GGGGGCCAGTGCCTTGTGGCTTGGGACAGAATCTGTCGCCCGATTGAGT-------------------------------
---------------------------------------------------------------------------CACTC
GCGAAGAGCCGATCGAGTCCCTACTCCATGCGTCCACGACGGTTAACATCGGCAATGGCGAAGTCGCCAAATTCTGGCGT
GATCGATGGCTCGACCGACAGGACATTGGCTCCTTTGCCCCGCGGCTGCTCGCGGCCACGGACCCATCAAGGTGAGACAC
GACTACGGTGCGCCAGGCCCTCATTGGACATGGCTGGGTACGCGACGTCGTTGGCGTGCTCACCTTC-------TCGCTG
AGTGCATCGACCTCCTGAATCGGCTGCAGGGAGTTGCGTTGACAGAGGACAGTCCGGATCGTCAGGTCTGGAAGTGGACG
AGCGATGGAGTCTACTCTGCATCCACTGCTTACCATGCCTACTTCATTGGATTGGAGAGATTACCTTGCGCCACC-TAAT
ATGGAAGTCCTGGGCACCGGCCAAGTGCAAGATGAACGCTTGGCTAACGATACAGGATCGGCTATGGACTGCCGACCGAC
GACATCGCCATGGACTATCCGCGAACGGTACCTGCGCTTTGTGTTCAAACGCCCAGGAAACGGCGGACCACATTGCAGTG
GGATGCTCGTTCTCGCGCGAGGTTTGGACGGCCATACTTCCGCGCTGCAACCTAGTAGTTCACAGGACGCCGCAAATGGA
CGCCCTGCAGGAATGGTGGCCTGACGCTCGTCGCCGACTCTCAAAACTGGCACGCAAAGGTTTCGACAGCATCGTGCTCC
TCATCGTGTGGAGCCTATGGATCGAGCGCAACGCCCGGACATTTGACAAC----------TCGCTGGGCACGGCCGCGCA
CGTGTGCACCGGCATTGTGGCTGAAGCCGACTTATGGAGTAAAGCTGGCGCTGTGGGGTTGCAATCCTTCTTGAGATAAA
TGATTAAGTGGGATAGAAGGCACCTAGTTGTTACCACTAGTGCACTGCCGTTCTCCCAACCCCGTTGTGGGGTCTGTAAC
ACCTTGTAAATCCTTCTCGCTCTAATATATCGACACGCAAGTCTTTTGCGTGTTCGCAAA-AAAAAAATACTAGTACTAC
AGATCGAGTGCATTCAGCCATATTTACACCACACCATCAGTCAGTACCCCATGAAGTCCACAATAGCACAAGACATTTGC
ATTCTTGGGACGGCTCCAAAAGAGAATAACAGGCATGCATACCCTGGAGATAGCAACAGAAGAGAGCCTCAACTTCACCA
GGAACGTCTGATCCCAAGTGGGCTAAGGCACCCCAGCTCTCCGGTGCAAGGAGGGTTCTTCACTGCCTCTTGGGCTTCCC
TGCAACGAAAAATGTTTCGGGGGTAAGCAATGTGAGGGTGAGACATCTATACGGCTCGTTTTCCAG-AGATTGGTCATAA
C-------------------------------------------------------------------------------
------------------------------------------------------------------AAAGGCATATCAAG
ATACAGAAA-----------------------------------------CAGTTTATCAATTTATCAAAGTGATCAAGC
AGGTCGGGCTGCACAGGATTCCTTGCAACATGAACACATGCAACAATTACCATAGAGCTTCAAAAAAAATTCTTACCTTA
GAGCATTTGCAATGACAGCATTTGCAGGATCCAGTTCCAAGCCATCCGCAAACGCCCGAGACGCGTCTTCATAGTCCTAT
GAGTAGACACCAGAGGATGATCAATTTCATGGTCAAAAAAGAAAATGATCGCAATTAATTTGCTCATTTTACCTCTAGAA
ACATTAAGGCTGCCCCTAGTCGATAGTAACCTTTGGGCCAGCGAGGTCGCAACATTGTGCACCTAGTAGCATCGGAGAGA
GCGTCTTTTCCTCTTCCCGAGCGCAGCAGACAGAAACTCCTATTTGCTAGGAGGATTGCAAGATCTTCTGCACTTGGCTC
AAAATTCATTGCCTACAGTAGACCAATCACATGCAGATTTTATTACTACAAGGGAGTTAACATAACA
>chr2A_1
AGCCGCAACATCTCCAGGTCATCAGTGATGCCTTCCCGTGCTAGGTCTCCCACTTCCCGTGCCGAGACCTGGGGCTCCCC
TTATCCTACAATCTCCCGTCAAAGGCAGCGCTGCAACCAGTCCTCGACAAGATCCTCAATCGCATACCCACATGGAAGGC
GCGCCTGATGTATCGCATTG--------------GTCAAAGTGGTTCTGGTAGCAATCCCGGTCTTCCACTCGATCGCCA
TGCAGCTCTCATCATGGTTCATGAAGACTTTGGGGCAAAAGATTCGGGCTTTCCTCTGGGCCGGGTCCGACTCAGTGAAC
GGGGGCCAGTGGCTTGTGGCTTGGGACAGAATATGTCGCCCAATTGAGTTCGGTGGCCTGGGTATCCCGAACCTCAAGAT
TCTCGGGTATGCCTTGCGAATGCGTTGGGCCTGGCAACGATGGGACCCAAACAGTTGCTGGAGCGGCCTTCAAGACACTC
GTGAAGAGCCGATCGAGTCCCTACTCCATGCGTCCACGACGGTTAACATCGGCAATGGCGAAGTCGCCAAATTCTGGCGT
GATCGATGGCTCGACGGACAAGACATTGGCTCTTTTGCCCCGCGGCTGCTCGCGGCCACGGACCCATCAAGGCGAGACAC
GACTACGGTGCGCCAGGCGCTCATTGGACATGGCTGGGTACGCAACGTTGTTGGCGTACTCACCTTCCCGGTCATCGCTG
AGTGCATCGACCTCCTGAATCGGCTGCAGGGAGTTGCGTTGACAGAGGACAGTCCGGATCGTCAGGTCTGGAAGTGGACG
AGCGATGGAGTCTACTCTGCATCCACTGCTTACCATGCCTACTTCATTGGATTGGAGAGATTACCTTGCGCCACCATAAT
ATGGAAGTCCTGGGCACCGGCCAAGTGCAAGATGCACGCTTGGCTAACGATACAGGATCGGCTATGGACTGCCGACCGAC
GACATCGTCATGGACTATCCGCGAACGGTACATGTGCTTCGTGTTCAAACGCCCAGGAAACGGCGGACCACATTGTCGTG
GGATGCTGTT----------------------------------------------------------------------
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>chr2A_979
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-----------------------------------------------------AGTAGTTCACAGGACGCCACAAATGGA
CGCCCTGCAGGAATGGTGGCCTGACGCTCTCCGCGGACTTTCAAAACAGGCACGCAAAGGTTTCGACAGCATCGTGCTCC
TCATCGTGTGGAGCCTATGGATCGAGCGCAACTCCCAGACATTTGACAACTCGCTGAGCTTCGCTGAGCACGGCCGCGCA
CGTGTGCACTGGCATTGTGGCTGAAGCCGACTTATGGAGTAAAGCTGGCACTGGAGGGTTGCAATCCTTCTTGAGATAAA
TGATCAAGTAGGATAGGAGGCACCTGGTTGTTACCACTAGTGCATTGCCATTCTCCCAACCCTGTTGTGGGGTCTGTAAC
ACCTTGTAAATCCTTCTCGTTCTAATATATCGACATGCAAGTCTTTTGCGTGTTCGCAAAAAAAAAGATACTAGTACTAC
AGATCAAGTCCATTCAGCCATATTTACACCACACCATCAGT--GTACCCCATGAAGTCCACAATAGCACAAGACATTTTC
ATTCTTGGGACGGCTCCAAAAGAGAATAACAGGCATGCATACCCTGGAGATAGCAACAGAAGAGAGCCTCAACTTCACAA
GGAACGTCTGATCCCAAGCGGGCTAAGGCACCCCAGCTCTCCGGTGCAAGGAGGGTTCTTCACTGCCTCTTGGGCTTTCC
TGCAACGAAAAATGTTTCGGGGGTAAGCAATGCGTGGGCCAGACATCTATACGGCAAGTTTTCCAG-AGACTGGTCATAA
CAAAGGCATGCGCAGGGCACTAGGACGAGGTGCTCTTCCATGAATTCGAGAACCAGAGCTACTGTTGTAGCTCTAAACTC
TTAATAGACCTTAGATGGTCATAAATACATGTGATACTCGAGTTTAGACCATCGCCTCGTATACTCAAATGCATATCAAG
AGACATAAA-----------------------------------------TAGTTTATCAATTTCTTGGAGTGATCAAGC
AGGTGGGGCTGCACAGGATTCCTTGCAACATGAACACATGCAACAATTACCA----------------------------
------------TGACAGCATTTGCAGGATCCAGTTCCAAGCCATCCGCAAATGCCCGAGACGCTTCTTCATAGTCCTAT
GAGTAGATACCATAGGATGATCAATTTCATGGTCACAAAAGAAAATGACCGCAATTAATTTGCTCATTTTACCTCTAGAA
ACATTAAGGATGCCCCTAGTCGATAGTAACCTTTGGCCCAGAGAGGTCGCAACATTGTGCACCTAGTAGCATCGGAGAGA
GCGTCTTTTCCTCTTCCCGAGCTCAACAGACAGAAACTCCTATTTGCTAGGAGGATTGCAAGATCTTCTGCACTTGGCTC
AAAATTCATTGCCTACAATAGACCAATCACATGCAGATTTTGT---TACAAGGTAGTTGACATAACA
>chr2B_1382
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-------------------------------------------------------------------ATACTAGTGCTAC
AGATCGAGTGCATTCAGCCATATTTACACCACACCATCAGTCAGTACCCCATGAGGTCCGCAATAGCACAAGACATTTGC
ATTCTTGGGACGGCTCCAAAAGAGAATAACAGGCATGCATACCCTGGAGATAGCAACAGAAGAGAGCCTCAACTTCACCG
GGAACGTCTGATCCCAAGTGGGCTAAGGCACCCCAGCTCTCCGGTGCAAGGAGGGTTTTTCACTGCCTCTTGGGCTTCCC
TGCGA-GAAGAATGTTTCGGGGGTAAGCAATGGGCGGGTGAGACATCTATACGGCTCGTTTTCCAGCAGACTGGTCATAA
CAAAGGCATGCGCAGGGCACCAGGACGAGGTGCTCTTCCATGAATTCGAGAACCAGAGCTACAG---------TAAACTC
TTAATAGACCTTAGATCGTCATAAATACATGTGATACTCGAGTTTAGACCATCGCCCCGTATACTCAAATGCATATCAAG
AAACAGAAACAACACTTGGAGTCCACAAGGACTTCGATCTATATAAGAAACAGTTTATCAATTTACCGCAGCGATCAAGC
AGGTGGGGCGGCACAGGATTCCTTGCAACATGAACACATGCAACAATTACCTTAGAGCTTCAAAAAAAAA--TTACCTTA
G---------------AGCATTTGCAGGATCCAGTTCCAAGCCATCCGCAAAAGCCCGAGACGCTTCTTCATAGTCCTAT
GAGTAGACACCAGAGGATGATCAATTTCATGGTCAAAAAAGCAAATGGTCATAATTAATTTGCTCATTTTACCTCTAGAA
ACATTAAGGCTGCCCCTAGTCGATAGTAACCTTTGGGCCAGAGAGGTCGCAACATTGTGCACCTAGTAGCATCAGAGAGC
GCGTCTTTTCCTCTTCCCGAGTGCAGCAGACATAAACTCCTATTTGCTAGGAGGATTGCAAGATCTTCTGCACTTGGCTC
AAAATTCATTGCCTACAGTAGACCAATCACATGCAGATTTTAT---TACAAGGGAGTTGACATAACA
>SNPs
-----------------------------------------S-----S-----------------S--------------
-----------S--------------------------------------------------------------------
-----------------S--SSSSSSSSSSSSSS----------------S-----------S-----------------
--S-----S----------------------S-S----------------------------------------------
-----------S--------------------S--------S--------------------------------------
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-S------------------------------------------------------------------------------
---------------S----S-----------S---------------------------------------S-------
------------------S------------------------S----S--------S----------------------
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----------------------------------S---------------------------------------------
-------S-----------------------S--S----S-----------------------------------SS---
-------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S--------
-----------------------------SS---S----S-------S--------------------------------
--------------------------------S---S-----------------------------S-------------
---------S---------------------------------------S---SS-------------------------
----S----S------S--------S------------------S----S------------S-----------------
-------------------S---------------S------------------------------S-------------
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--------------------------------S-S-----------------------------------S---------
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---------------------------------------------------------------------S----------
-S-----------------------------------------------------------------SS-----------
----S----------------------------------------------------------------SSS--------
-SSSSSSSSSSS----------------------------------------S-----------S---------------
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-----------------------------------------S--------------------------------------
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-------------------------------------------SSS------------S--------
>forward_1078
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------------------GAGGTTTGGACGGCCATACT------------------------------------------
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>reverse_2169
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--------GCAATGACAGCATTTGCAGGA---------------------------------------------------
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