>input_sequence_86352
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------ATGGCAGCTGCTCGCGTCGGCATTGTGCTCCTGGTGGTCATGGTCATCGCCGCGCAGCTCGTGGCGGCGCCGGA
AGCTCGCCTGATCCAGCACCCGGCGGTTGCACTTGCACACACCGCCGCCAACGGCAAACCGGCTGGCGTCCCGCCGGCGA
AGTGGAACATGCGAAGGACGCTCGGTGCCGCAGTGAAGAGGACGGTTCCCGGCGGTCCAGACCCACAGCACCATTACTAA
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>chr1D_1_TraesCS1D01G337000
CAAAATGAATGGGTTGATAAATAAAATAAAAAACAAAATGACTAAATTTAAACAAAAACAAATGCAAAATAAAAAATAAC
TAAAGCTAATAAATACTAGGTATATGAAGTTTATACCACTACTCAAACCTACACGTTGCAAAAGTCGTTGATAATACAAA
AAAAAGGCCAAAAGGGGTCACACGACCCTCTCGATCAAACAGGAAAAACAGAAAAAAGCAATGGCATCACTGCTCACGGG
ACAAAAAATAATCACATAGAAGCCCAAGTACATGAATGAAACGACGGCCCAGGAAGAAACGAAAAGCTCAGAAGAAAAGA
TACGAACAAACAATCGATCGTGTAGTTAGGGCCGAGATAGCGAACAAATCCCATGTAACTCAGTCGACTGAGACTTTAGT
AATTCTCAGTCGACTGAGAATTAGCACAACCGAAAACCAAAAGTTGACACGCCCCACGAACTGCCATGGATCCATCAACT
TTCGACGCGCCGTCGGTTGTGCAGCCACTCAAAGTACATACTGCCAAGGTT---------GATTTTATATATACTGTAAA
TAAAGGAATACAAGCTTTTCACATACCGTTTGCGTTTGGTTGTCAACTTTCAGTCTCCATCCGGAATCATCACCAGCAAA
TCCCATGTTCAGTGCAGCTGGAGCTGGCCAGCATGGGTGAAAAACGTGTGCAGGCCAACCGGAATCACGAGC---CCGTA
AACT-------------TTTGCTGCGCCATGGCGAC---------TAGTGGTAGTAGTGGACATTAGGAGATTCTCACCC
GCCTCGCCGCTCCTTATGCGAGTTGTAACTAACTAAAGAACGATTTTTGTCCTGCATCCAAAAGGATCGAGAGAAAGCTT
CGATTGTCACGACGCGCCTGG----GAGCTATAAGTA---CACCTGTCCGTCCATGGACCGATCAGATCAGATACACGTA
GAGACCACCTCTTGCACACTGACACGCACGGTAGATAAGCTCGCTAGCTGCCGTATATTCGAGCTCCCAAGTACCAG---
--AAAGATGGCAGCTGCTCGCGTCGGCATTGTGCTCCTGGTGGTCATGGTCATCGCCGCGCAGCTCGTGGCGGCGCCGGA
AGCTCGCCTGATCCAGCACCCGGCGGTTGCACTTGCACACACCGCCGCCAACGGCAAACCGGCTGGCGTCCCGCCGGCGA
AGTGGAACATGCGAAGGACGCTCGGTGCCGCAGTGAAGAGGACGGTTCCCGGCGGTCCAGACCCACAGCACCATTACTAA
GGAACGACTAGCTGGGTTCGGCTTCAAATGCATGGACTGGTCTAGCTACCGGTCCTCCTGCTGTACTGGCAACGTAGTAC
TCCCTCCGTTCCAAAATAGATGACTCAACTTTATACTAACTTTAATATAAAGTTGGGTCATCTATTTTGAAACGGAGGGA
GTAGTATTTTGTTCTCTCTTTTGGTAAACAAACAAACCGCACGAGCTGCTTGCTCATTGTTCCATGCATACCCATGAATA
AAGTGATCTTCACAAGCTCGCAAGATTATGTCAGTACGAAGGGCTTTGTGAAATGGAATTACCTTTCTCAGCTCGAGCTC
AAATGCTTCTGGTATGAACAATAAAACTAAAAAAATAGATTTTTTTAAAGAAAATTCTGACTTTTTTTGTGGCAAACATT
AAGGAACGTTTGAAGTGTTCGAAATGTTCATCATGAAATTACATTCGTGGAAGATGCGGCAAAAAAAATCAGAGCTCCAA
AAGGCGTTCAGAAGTACCATTTTCAGAGCATCAAATTTTTTTCCACGACTTCCACGAATGTGATTTCATGATGAAACTTC
GCAAGCACCCTAAAAATTCATTAATATTTGCCATAAAAAATTCAGCAATTTTGAATATTTTACCTTTTTTCTTTCAAATT
TGTTGTTCATCCAGGAGCGTATGAGCTCGCAATCAGATGCTTCTTCCCTGCGAAATTGTATTAGTCCTCACTGGGGACGG
TGTTTTCACTCCCGAACTTGCTCGTGTCTTAAAAAAGTAGTTAGCATAAATTTAAATTATGATTTCTTTTACAACAAACA
TGCTCATATCTTATATTGTGCATATATTTTATAAACAAAAGAATCATTCCTCAAATTGGAATTAAAAATAGTTTTTTATT
TTGTCCTAAAGCACCAGGAATGTTTTTTATTCAAAAACTACTGCACATATTTTTATATGACATAAATATTTCTTATATTA
AAATATTTCAGGTTTTTATTTTTTAAAATTAATTTAATGG
>chr1D_461
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------------------------------------------------------------CTGCCATGGATCCATCAACT
TTCGACGCGTCGTCGGTTGCGTACCCACTCAAACTGTATCGACGTTTGTTTCAGTACCAAGGTTGTTTATTTACTGTAAA
CCAAT------AAGCTTTTCACGTAC------CGTCTGATCCTCAACTTTCAGTCTCTATCCCAGATCATCACCAGCAAA
TCCCATGCTCAGTGCAGCTGG------CCAACATGGGTGAAAAACATGTGCTCGCCAACCGGAATGGCGAGTCCAAAACC
GCCAGAGGGCCACAAACTTTGCTGCGCCATTGGTGACTAGTG-----GTAGTTGTAGTGGACACTAGGACGTTCTCGCTC
G----------------------TTTCACTGACGAACAAACTATTTTTGTGCTGCGTCCATAAAGGACCAAGAAAAGCTT
CAATTGTCACGATGCGCCTGCGAAAGAGCTATAAGTAGCACACCTGTCCATGAA---------CAGATCAGATACACGTA
GAGACCTCCTCTTGCACACTGACACGCACGGCAGATCAGCTCGCTAGCTGCCGTATATTTGAGCTCGCAAGTACCAGAAA
GAAAATATGGCTGCTGCTCGCGTCGGCATTGTGCTCCTGGTGGTCATGCTCATCGGCGCGCAGCTCGTGGCCGTGCCGGA
AGCTCGCCCGATCGAGCAACCGGCGGTTGAAGA---ACACACCGCCGCCAACGGCAAAGCGGCTGGCGTTCCGCCGTCCA
AGTGGAACGTGCGAAGGGCGGTCGT---CGGAGAGAAGAGGACGGTTCCCGGGGGCCCAGACCCGCAGCACCATTACTAA
CCACG---TAGCTGAGTTCGCCGTTAAGTGAATGCATTGGTCT-------------------------------------
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>chr1A_584
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--------------------------------CGTTTGGTTCTCAACTTTCAGTCCCCATCCGGAATCATCACCAGCAAA
TCCCATGTTCAGTGCAGCTGGAGCTGGCCAGCATGGGTGAAAAACGTGTGCAAGCCAACCGGAATCACGAGTCCGCCGTA
AACT-------------TTTGCTGCGCCATGCCGCCATGGCGACTTAGTGGTAGTAGTGGACATTATGACATTCTCACCT
GCCTCGCCGCTCCTCATGCGAGTTGTAACTAACTAGCTAACGATTTTTGTCCTGCATCCAAAAGGATCAATGGAAAGCTT
CGATTGTCACGACGCGCCTAG----GAGCTATAAATA---CACATGTCTGTCCATGGACACATAATATCAGATACACGTA
CATACCACCTCTTGCACACTGACACGCACGGTAGATCAGCTCGCTACCTGCCGTAGATTTGAGCTCCCAAGTACCAGAAA
GAAAAGATGGCAGCTGCTCGCGTCGGCATTGTGCTCCTGGTAGTCATGGTCATCGCCGCGCAGCTCGTGGCCACGCCGGA
ACCTCGCCTGATCCAGCACCCGGCGGTTGCACTTGCACACGCCGCCGCCAACGGCAAACCGGCTGGCGTCCCGCCGTCCA
AGTGGAACATGCCAAGGACGCTCGG---CGCAGTGAAGAGGACGGTTCCCGGCGGCCCAGACCCACAGCACCATTACTAA
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
---------S---------S-S-S---------S-SS--SSSSSSSS-S------------S--S-S---S---------
SS--SSSSSSS-----------S---SSSSSS---------S--------------------------------------
----------------------------------------------------S------------------S--------
----------------------------------S----------------------------------S----------
--------------S---------------------SS------------------------------S-SS--------
-----------------------------------------------------------SS-------------------
------------------------------------S----------------------S--------------------
-----------------------------------------------------------------------S--------
----------------------------------------------------------------------------S-S-
-------------------------SSS---------------------------S------------------------
SS-SSSSS------S-----S-S-S--S--S---S-S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_514
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--------------GGTTGTGCAGCCACTCAAAG----------------------------------------------
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>reverse_1726
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---------------------------------------------CGTGGAAGATGCGGCAAAAA---------------
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