>input_sequence_86337
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-------------------------------------------------ATGGGACGTCCGTCGTCCGGCGGGGGACAGC
AGCCCAAGCTCCGGAAGGGGTTGTGGTCGCCCGAGAAAGACGAGAAGCTCTACAA--------CCACATCATCCGGGATC
CGGCACGGCGTCTGTTGCTGGAGCTCCGTCCCCAGGCTGGCCGGGGTGCACCGATGCGGCAAGAGCTGCCGCCTCCGGTG
GCTCAACTACCTCCGCCCCGTCCT-AAGCGCGGCTGCTTGTCAAT-------------------------CTCCATGA--
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>chr1B_1_TraesCS1B01G384000
CCGAACTCGGCGTCGTCCTCCGC-----CCATGCCGCCGCCGAACTGGCCATACAATGCCGCAGCGTTCGCCGCGCCGAG
GTCCTCGACGAACCTGCTGCCGAAGTCGGCGGCGCACACGGGGAAGGGGTCGAAGTCGAACACCGCCGGCTGCTTCGGAC
GGAGTCTGTCGTCAGCCTCCGCGGCAGGGGGCTTACGGTCATCCTCTTCCGCGTCCGGCAATGCGGCCGTGGCCGTGTCG
GCGA--------CAGCCATAGGCTTGTGCGTGGCGGGGTCGATGCCTTGCTGGCGGAGCTTCTTCTGATGCAGCTGTTCC
AGAAGTTCTTGATCTCGTTGTCCGTCCGGCCCGGCAGGTGCGACGCGATCTGTGACCACCTGCAACTGCAAGCACACACG
CATGACGCCTCACAGCATGTTATCCCAAATCTTTCAGGCTTTCAGCCCACTCACTCTGCTTGAACGCGAGAGCACTGCAA
AA-TTAATGTACTCGTGGTCGCAGGCACATCCATGCACTACCCAAGTACGTACTAGGATGAATGAATCGACAGCAGGTGA
GGTTCAAAAAAGAATACAAATTGGCAGCAGGTGTGGTTCAAGAAAGAAGTACACTAGTACAGTAC---------------
--------TAGATTGTAAACTTAACTGGGGAACACGAGTACAAGACCGGCTCGCTCGACGCGA--AAATCTAC-------
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----GCCTAGCAATAAGTTACTACTCTAAAGCTACCTGCAACCAAGTCTACAGGTTTGTCGGACCCTGCTGGCGGCGCTG
GCACGTCGGCGGGA-GGGGGCTACTCGTCGTCGGGC-------------------TTACTGGGCTTGCGG--CTTCTCAC
TCACGATTCTCCCAGATATACCCGATCATATGTAGTAGCAGGCAAGATGCAACC----------ATCGATCGGGACGAAG
CAAGGGTTGACCGATCCCCATTA---CATTAGTGTACAACCATCGACATTGGCTAGCTGCTTAGCTCGA----TCGTGGA
AGTAGCTACAAGTCCGGCCAGCAGCTACCGCAGACGAATCAATGGGAGTATGGGACGTCCGTCGTCCGGCGGGGGACAGC
AGCCCAAGCTCCGGAAGGGGTTGTGGTCGCCCGAGAAAGACGAGAAGCTCTACAA--------CCACATCATCCGGGATC
CGGCACGGCGTCTGTTGCTGGAGCTCCGTCCCCAGGCTGGCCGGGGTGCACCGATGCGGCAAGAGCTGCCGCCTCCGGTG
GCTCAACTACCTCCGCCCCGTCCT-AAGCGCGGCTGCTTGTCAAT-------------------------CTCCATGAGG
TCCTAGGGAACAGGTCCGTCCG----T-------CCGCGCAATGCATTC---AGGTCATATTAATTTCACA---------
--------GTGCGAAAATCGA-TCGAGCTAGCAGAAAGATTTGGGAC-AACGTACCGAATTACTGATG-----CGTGTGT
GCTTGCAGGTGGTCTCAGATCGCGTCGCACCTGCCGGGCCGGACAGACAACAAGATCAAGAACTTCTGGAACAGCTGCAT
CAAGAAGAAGCTCCGGCAGCAAGGCATCGACCCCGCCATGCACAAGCCCATGGCCGCCGCGGACA------CGGCCACGT
AGGCGTTGCCGGACGCGGAAGAGGATGACCGTAAACCCCTTTCCGCGGCGGTTCGACGGCAGCCTCGCTCCGAA-CAACC
GGTGGTATTCAACCCGTTCCCGGTGTGCACCGACTAT----------------------GGCGACGGGTTCGCCGACCCT
TGG-----------CGCGGCAGCATTGTACGGCCTATTTGGCGGCGGCAAGGAGGGCGTGGACGATGATGCGA--TTTGG
CGCGGCCGACTACAGCTGCGTGCTGGACATGTCGGAGAACCTGGG---CTACGGCCCACGGGGAGAGCTCGAGCAACAAC
AGCAACTGAAACTACGGCGGCGAGGTGGGCAGCATTCTCGACGGCGAGGTGCCG------CCCTGGGCCAAGGGGGAGAT
GGAGCGGCAACACGACGCACCGC---TGGAGCACAAGCTCTCGCTGTCCTGCCCAGAACAGAGCCTC-------ATTTCG
ACTTCAACTTAAACAAATAGTTCT-GACTTTTCTTTCTCCCTCCATTAGATCGCAAGTTGGTGCTACATCGGGAGTTCGA
GCAGTAATTTGCAGCACAGAGCAGTACCATTTTTATAGGCACATTGGTTTGCTTCCTGTAGCATGCTGAGTAGGCAACGA
GTATTTTATTAGACCGTCTACACTCGGACTCTTCAAATCGGCTCTATATTTCCGGATTAACCGGCATCGCTCATATCCAA
CTGAAATCTAGGACGGGTATGAGAAGGCCCGAACACTACCGGCCATGTCGGGGGAATG
>chr1D_1
CCGAACCCGGCGTCATCGTCCGGGCACTCCATGCCGCCGCCGAACTGGCCATACAATGCCGCAGCGTTCGCCCCGCTGAG
GTCCTCGACGAACCTGCTGCCGTAGTC---GGCGCACACGGGGAAGGGGTTGAA-------ACCTGCGGCTGCTTCGGAC
CGAGGCTGCCGTCAGCCTCCGCGGCAGGGGGCTTACGGTCATTCTCTTCCGCGTCCGGCAATGCCGCCGTGGCCGTGACG
CCGTGTCGGCGGCAGCCATGGGCTTGTGCGTGGCGGGGTCGATGCCTTGCTGGCGGAGCTTCTTCTGATGCAGCTGTTCC
AGAAGTTCTTGAGCTCGTTGTCCGTCCGGCCCGGCAGGTGCGACGCGATCTGTGACCACCTGCAACTGCAAGCACACACG
CATGACGCCTCA--GCATGTTATCCCAAATCTTTCAG--------CCCACCCACTCTGCTTGAACGC--GAGCACTGCAA
AA-TTAATGTAC---------------------------------GTACGTACTAGGATGAATGGATCGGTAGCAAC---
------------------------------GTGAGGTTCAACAAAGAAGTACAAATTGGCAAGTA---------------
----GCAGTAGATTGTAAACTTAACCGGGGAACACGAGTACATGACCGGCTCGCTCGACGCGACCAAGTCTATGCCGATT
TTTTGTTAAAAGAGACCACCTACCAAACGAAATTGTAAAAAAGACCCCTTCCGAATGAAAGTGACAAAAAAGACCCCTCG
GCCGTGGCGGCAGGCGCGCCGGGTGACACGTGGCACCTGCCGCCACGGTGCGAGGCGGCAGCCCATGCCGCGAGGCGGCA
GGCTCGGCATAACCGCAAAAGGCTGGCACGACGGAACGGGCTGGCGATGTGGGCCCCCGCCGCCTCAGGGGCTGGCGGCA
GGACTGTGCCGGTAGGCCTGGCCGCCTCTCTGGCTGGCGGCAGGTCCCTGCATGCGCGCTACGGTGCCGCTCGTCTAAGA
GCAGTACGGACTAAGGAACATGCATGCGTGCTCTACGTACCAATGCTAAATAAACATGCATGGGGGGCAAGGCAACTACG
TAAGCAGTTTAATTAAGCCGAGTCTGATCTGCCATGCATCATTTCTATCTCATTTCTTGTCGTCTCGTCACAAGTTTTCA
TGTTCGTTCTCATGCATGCTACGAAAACAATTCCATCGTCTCTTTCTCTCTGTATGCGGGGTATTTCAGATCGACGACAC
GACGCGACGAGGCTACGTAGCTAGGCTAGGCCACTGTGATGTGCGCCACGACGCGACGAGGCTACCTACCTGTGCTGCCG
CCTCAGCCACAGGCGGCAGGCCCCACCACCGGGCCTCCGTTACGTCGCGCGAGCAACTGCACCGTAATCCGCGGGCCGCC
GCCTGCCCGGCTGGCGGCCTCCCACCGTGGCGGCAGGTGCCACGTGTCGCCTGGCGCGGCTGCCGCCATGGCTGAGGGGG
TCTTTTTTTGTCAATTTCATTTGGAAGGGGTCTTTTTTGTCAATTCTGTTGGGCAAGGGTTTTTTTTGACAAAAAATCGT
CTATGCCCAGCTACAAGTTACTGAGCTCG----ACCTGCGACCAAGTCTACAGGTTTGTCGGACCCTCCTGGCGGCGCCC
ACACGTCGGCGGGAGGGGGGCTACTCGTCGTCGGGCCCCACCTCACTCGCCAAGCTTACTGAGCTTGCGGTTCTTCTCAC
TCACGCTTCTCCCAGATATACCCGACCATTTATACCCAATTCGGGAGGAAGGAAGCAACGGTTGATCGATCGGGAGGAAG
CAACGGTTGATCGACCGCCAATTCGCCATTAGTGTACAACCATCGACGTTGGCTGGCTGCTTGCTCGATCCTGTCGTGGA
AGTAGCTACAAGGCCGGCCAGTAGCTACCACAGACGAATCAAT---------GGACGTCCGTCGTCCGGCGGCGGACAGC
AGCCCAAGCTCCGGACGGGGTTGTGGTCGCCCGAGAAAGACGAGAAGCTCTACAAGACTACAACCACATCATCCGG----
---GATCCGGCACGGCCT------------CCGTTGCTGGCCGGGGTGCACCGGTGCGGCAAGAGCTGCCGCCTCCGGTG
GCACAACTACCTCCGCCCCGTCCTC--------------GTCAAT-------------------------GTCCACGAGA
TCCTAGGGAATAGTTCCGTCCG----T-------CCGCGCAATGCATTC---AGGTCATATTAATTTCACA---------
--------GTGCGAAAATCGA-TCGAGCTAGCAGAAAGATTCGGGAC-AACGTACCGAATTACTGATG-----CGTGTGT
GCTTGCAGGTGGTCTCAGATCGCGTCACACCTGCCGGGCCGGACAGACAACAAGATCAAGAACTTCTGGAACAGCTGCAT
CAAGAAGAAGCTCCGGCAGCAAGGCCTCGACCCCGCCATGCACAAGCCCGTGGCCGCCGCCGACA------CGGCCACGT
CGGCATTGCCGGACGCGGAAGAGGAAGACCATAAACCCCTTTCCACGGCGG-TCGACGGCAGCCTCGCTCCCAAGCAGCC
GGTGGTATTCGACCCGTTCCCGG-GTGCACCGACTATGGTGACGGGTTCTCCGACCCTTGG-------------------
--------------CGCGGCAGCATTGTACGGCCAATTCGGCGGCGGCAAGGAGGGCGTGGACGACGATGCCGGGTTTGG
CGCGGCCGGCTACAGCTGCGTGCTGGACGTGTCAGAGAACCTGGG---CT-------ACGGGGAGAGCTCGAGCAACAGC
AGCAACTGGAACTACGGCGGCAAGGTGGGCAGCGTGCTCGACGGCGAGGTGCCG------CACTGGACCATGGGGGAGAT
GGAGCGGCAACACGACGCACCGC---TAGAGCGCAAGTTCTCGCTGCCCTGCCCAGAACAGAGCCTC-------ATTTCG
ATTTCAACTTAAGACAATAGTTCTAGACTTTCCTTTCTCTCTCCATTAGAACGCAAGTTGGTGCTACATCGGGAGTTCGA
GCAGTAATTTGTAGCACAGAGCAGTACCATTTTTATAGGCACATCGGTTTGCTTTTTGTAGCATGCTGAGCAGGTAATGA
GTATTTTATTAGAGCATCTAGAGTCGGGCTCCTCAAACCGGCTCTATATTTTAGGACTGACCGACACTCCTTATATTCAA
CCTAAATTTAGGACGGGTATAAGGAGGCCCGAACAC----------------------
>chr1A_1
CCGAACCCGGCGTCGTCGTCCACGCCCTCCATGCCGCCGCCGAACTGGCCATACAATGGCGCAGCGTTCGCCGCGCCGAG
GTCCTCGACGAACCTGCTGCCGTAGTCA---GCGCACACGGGGAAGAGGGCGAA-------ACCGCCGGCTGCTTCGGAC
CGAGGCTGCCGTCAACCTCCGCGGCAGGGGGCTTACGGTCATCCTCTCCCACGTCCGGCAATGCCGCCGTG--------G
CCGTGTCGGCGGCAGCCATAGGCTTGTGCGTGGTCGGGTCGATGCCTTGCTGGCGGAGCTTCTTCTGATGCAGCTGCTCC
AGAAGCTCTTGATCTCGTTGTCCGTCCAGCCCGGCAGGTGTGATACGATCTGTGGCCACCTGCAACTGCAAGCACACAGG
CATGACGCGTCA--GCATGTTATCCCAAATCTTTCAG--------CCCACTCACTCTCCTTGAACGC--GAGCACTGCAA
AAATTAATGTCCGCGTGATCGCAGGCA----CATGCACCAGCCAAGTACGTACTAGGATGAATGAATCGGCAGCA-----
-----------------------------GGTGAGGTTCAAAAAGGAAGTACAAATTGGCAAGTAATTTCGAACGGAGGG
AGTAGCAGTAGATTGTAAACTTAACTGGGGAACACGAGTACATGACC-GCTCGCTCGACGCGACCAAGTCTAC-------
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----GCCTAGCTACAAGTTACCTGCGCAATG-------------------------------------------------
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------------------------------------------------------------------------------CA
TTCACGAGTACATGACCGTACG----T-------CCGCGCAATGCATTC---AGATCATATCAATTTCGCA---------
--------GTGCGAAAATCGA-TCGAGCTAGCAGAAAGATTTGGGACAAACGTACCGAATTACTGACG-----CGTGTGT
GCTTGCAGGTGGTCTCAGATCGCGTCACACCTGCCGTGCCGTACGGACAACGAGATCAAGAACTTCTGGAACAGCTGCAT
CAAGAAGAAGCTCCGGCAGCAGGGCATCGACCCGGCCACGCACAAGCCCATGGGTGC------CA------TGGCCACCG
CGGCATTGCCGAACGCCGAAATGGAATACCGTAAGGCCCTTTCTGCGGTGG-TCGACGGCGGCCTCGCTACGAAGCAGCC
GGCGGTGTTGCACCCGTTCCTGGTGTGCGCCAACGAC----------------------GG-------------------
--------------TGCGGCAGCATTGTACGACCAGTTCGGCGGGGGCGAGGATGGCGCGGACGACGATGCCGGGTTCGG
CGCCGCCGACTACAGCTACATGTTGGACGTGTCGGAGAACCTGGG---CT-------ATGGGGAGAGCTCGAGCAACAGC
AGCAACTGGAACTACGGCGGTGAGGTGAGAAGCGTGCTCGATGGCCGGGTGCCGGTGCCGCACTGGGCCAAGGCGGAGCT
GGAGCGGCCACACGACGCACCACGGGTGGAGCACAAGTTTGCGCTGCCCTGCCCAGAACAGAGCCTC-------ATTTCG
ACTTCAACTTGGAACAATACTTCT-GACTTTTCTTTCTCCCTCCATTAGACCGCAAGTTGGTGCTACATCGGGAGTTCGA
GCAGTAGTTTGTAGCACAGAGCAGTACCATTTTTATAGGCGCATTGGTTTGCTTTCTGTAGCATGCGGAGCAGGTAACGA
GTAATTTATTAGAGCACCTACAGTT-GGCTCTTCAAAACAGCTCTATACTTCCGGATTGACCGGCAGCTCTCATATCTAG
CCCAAATCTAGTATGGATATGAGAAGGCCTGAACA-----------------------
>chr1D_967
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---------------GGCCAGCAGCTGCCGTAGAGTAATCAAT---AGAATGGGACGTCCGTCGTCCGGCGGCGTGGGGC
AGCCCAAGCTCCGTAAGGGGCTGTGGTCGCCTGAGGAGGACGAGAAGCTCTACAA--------CCACATCATCCGG----
---CACGGCGTTGGCTGCTGGAGCTCCGTCCCCAGGCTCGCCGGGCTGAACCGCTGCGGCAAGAGCTGCCGTCTCCGGTG
GATCAACTACCTCCGCCCCGACCTCAAGCGCGGCTGCTTCTCGCAGCAGGAGGAGGACCACATCGTTGCGCTCCACCAGA
TCCTCGGCAACAGGTCAGTGCAATTGCAAATTTACAGTGCAATGCGTTC---AGTTACAGTTGAAATTTTCCGGTACAAT
TTTGTAATGTGCGGAGCA-GA-GTGAGTGAACTGAAGTATTTGGGAC-GACATGTA----TACTGATG-----CGTGTGC
TCGTGCAGGTGGTCACAGATCGCGTCGCACCTGCCGGGCCGGACGGACAACGAAATCAAGAATTTCTGGAACAGCTGCAT
CAAGAAGAAGCTCCGGCAGCAAGGCATCGACCCCGCCACGCACAAGCCCATGGCCGCCGCCGACA------CGGCCACGG
CGCCATTGCCGGATCCGGAAGAGGAAGACCGTAAGCCACTTTCCGCGGCGG-TCGGCGGCAGCCTCGCTCCGAAGCAGCC
GGCGGTGTTCGACCCGTTCCCCGTGTGCGCCGACTAC----------------------GGCGGCGGGTTCGCCCACGGC
CTCGGCGCGGAGAACGCGGCCGCATTGTACGGTCAGCTCGTTGGCTGCAAGGAGGGCGCGGACGACGACGCCGGGTTCGG
AGGCGCGGACTACAGCAGCGTACTGGACGTCTCCGAGAACCTGGG---CT-------ACGGGGAGAGCTCGAGCAACAGC
AGCAACTGGAACTACGGCGGCGAGGTGGGCAGCGTGCTCGACGGCGAGGTGCCG------CACTGGGGCAAGGCGGATAT
GGAGCAGCAGCACA---CACCGC---TAGAGCACAAGTTGTCGCTGCCCTGCCAAGAACAGAGCCTC-------------
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>chr1D_967
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---------------GGCCAGCAGCTGCCGTAGAGTAATCAAT---AGAATGGGACGTCCGACGTCCGGCGGCGTGGGGG
AGCCCAAGCTCCGCAAGGGACTGTGGTCGCCCGAGGAAGACGAGAAGCTCTACAA--------CCACATCATCCGG----
---CACGGGGTCGGCTGCTGGAGCTCCGTCCCGAGGCTGGCCGGGCTGAACCGCTGTGGCAAGAGCTGCCGCCTCCGGTG
GATCAACTACCTCCGCCCTGACCTCAAGCGCGGCTGCTTCTCGCAGCAGGAGGAGGACAACATCGTCGCGCTCCACCAGA
TCATCGGCAACAGGTCCGTACAATTGCAAATTCGCAGTGCAATGCGTTCTTCAGTTACCATTGCAATTTTTCAGACAGTG
G-----------------------------GCTGAGTGTTTTGGGAC-GACATATG----TACTGATG-----CGTGTGT
GCGTGCAGGTGGTCACAGATCGCGTCGCACCTGCCGGGCCGGACGGACAACGAGATCAAGAACTTCTGGAACAGCTGCAT
CAAGAAGAAGCTCCGGCAGCAAGGCCTCGACCCCGCCACGCACAAACCCATGGCCGCCGTCGACA------CGGCCACGG
CGGCATTGCCGGACGTGGAAGACGAAGACCGCAAGCCCCTTGCCGCGGCGG-CCGACGGCAGCCTCGCTCCGAAGCAGCC
GGCGGTGTTCGACCCGTTCCCGGTGTGCGCCGACTAC----------------------GGCGCTGGGTTCACCGACGAC
CTCTGCCCGGCGAACGCGGCAGCATTGTACGGCCAGTTCTGCGGTGCAAAGGAGGGCGCGGACGAAGACGCCGGGTTCGG
CCCCGCGGACTACAGCTGCGTGCTGGACGTCCCGGAGAACCTGGG---CT-------ACGGGGAGAGCTCCAGCAACAGC
AGCAACCGGAACTACGGCGGTGAGGTGGGCAGCATGCTCGACGGCGAGGTG-----------------------------
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>chr1A_973
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---------------------CAGCTGCCGGAGAGGGATCAAT---AGAATGGGACGTCCGTCGTCCGGCGGCGTGGGGC
AGCCCAAGCTCCGCAAGGGGCTGTGGTCGCCCGAGGAGGACGAGAAGCTCTACAA--------CCACATCATCCGG----
---CACGGCGTCGGCTGCTGGAGCTCCGTCCCCAGGCTCGCCGGGCTGAACCGCTGCGGCAAGAGCTGCCGCCTCCGGTG
GATCAACTACCTCCGCCCCGACCTCAAGCGCGGCTGCTTCTCGCAGGAGGAGGAGGACCACATCGTCGCGCTCCACCAGA
TCCTCGGCAACAGGTCTGTCCGCGGCT-------CCGCGCAATGCATTC---AGTTCGTATTGATTTTTCA---------
--------GTGCGGAGGTCGATTCGAGCTAGCAGAAAGATTTGGGAA-AACATACTGAATTACTGATGCGTGTCGTGTGT
GCGTGCAGGTGGTCTCAGATCGCGTCGCACCTGCCGGGCCGGACGGACAACGAAATCAAGAACTTCTGGAATAGTTGCAT
CAAGAAGAAGCTCCGGCAGCAAGGCCTCGACCCCGCTACGCACAAACCCATGGCCGCCGCCGACA------CGGCCACGC
CGGCATTGCCGGACACGGAAGAAGAAGACCGCAAGCCCCTTGCCGCGGCGG-CCGACGGCAGCCTCGCTCCGAAGCAGAC
GGCGGTGTTCGACCCGTTCCCGGTGTGCGCCGACTAC----------------------GGCGCCAGGTTCGCCGAGGAC
CTCGGCGCGGCGAACGCGGCGGCATTGTACGGCCAGTTCTACGGTGGAAAGGAGGCCGCGGACGAAGATGCCGGGTTCGG
CGCCGCGGACTACAGCTGCGTGCTGGACGTCCCGGAGAGCCTGGG---CT-------ACGGGGAGAGCTCCAGCAACAGC
AGCAACCGGAACTACGGCGGCGAGGTGGGCAGCATGCTCGACGGCGAGGT------------------------------
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>chr1B_998
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----------------------------------------------AGAATGGGACGTCCGTCGTCCTGCGGCGTGGGGC
AGCCCAAGCTCCGCAAGGGGCTGTGGTCGCCCGAGGAGGACGAGAAGCTCTACAA--------CCACATCATCCGG----
---CACGGCGTCGGCTGCTGGAGCTCCGTCCCCAGGCTGGCCGGGCTGAACCGCTGCGGCAAGAGCTGCCGCCTCCGGTG
GATCAACTACCTCCGCCCCGACCTCAAGCGCGGCTGCTTCTCGCAGCAGGAGGAAGACCACATCGTCGCGCTCCACCAGA
TCCTCGGCAACAGGTGTGTCCGCGGCT-------CCGCGCAATGCATTC---AGTTCGTATAGATTTTTCA---------
--------GTACAGAGGTGGATTCGAGCTAGAGGAAAGATTTGGGAA-AACATACTGAATTACTGATGCATAGG--GTGT
GCGTGCAGGTGGTCACAGATCGCGTCGCACCTGCCGGGCCGGACGGACAACGAAATCAAGAACTTCTGGAACAGCTGCAT
CAAGAAGAAGCTCCGGCAGCAGGGCATCGACCCGGCCACGCACAAGCCCATGGGCACCGCCGACA------CGGCCACGG
CGGCATTGCCGGACACAGAAGGGGAAGACAGTAAGCCCCTTACCGCGGCGG-CCGACGGCAGCCTCGCTCCGAAGCAGTC
GGCGGTGTTTGACCCGTTCCCGGTGTGCGCCGACTAC----------------------GGCGCCGGGTTCGCCGACGAC
CTCGGCGCGGCCAACGCGGCGGCATTGTACGGCCAGTTATGCGGTGGAAAGGAGGGCGCGGACGAAGACGCCGGGTTCGG
CGCCGCGGACTACAGCTGCGTGCTGGACGTCCCGGAGAACCTGGG---CT-------ACGGGGAGAGCTCCAGCAACAGC
AGCAACCGGAGCTACGGCGGTGAGGTGGGCAGCATGCTCGACGGCGAGGTG-----------------------------
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>chr1D_998
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----------------------------------------------AGAATGGGACGCCCATCGTCCGGCGGCGTGGGGC
AGCCCAAGCTCCGGAAGGGGCTGTGGTCGCCCGAGGAGGACGCGAAGCTCTACAG--------TCACATCATCCGG----
---CATGGCGTCGGCTGCTGGAGCTCCGTCCCCAGGCTGGCCGGGCTGAACCGCTGCGGCAAGAGCTGCCGCCTCCGGTG
GATCAACTACCTCCGCCCCGACCTCAAGCGCGGCTGCTTCTCGCAGCAGGAGGAGGACCACATCGTCGCGCTCCACCACA
TCCTCGGCAACAGGTCCGTGCAATTGCGAATTCGCAGTGCAATGC-------------------AATTTTTCAGTACGAT
TTTGCAGTGCGC-----------TGAGTGAACTGAAATATTTGGGAC-GACATATA----TACTGATG-----CGTGTGT
GCGTGCAGGTGGTCGCAGATCGCGTCGCACCTGCCGGGCCGGACAGACAACGAGATCAAAAACTATTGGAATAGCTGCAT
CAAGAAGAAGCTCCGGCAGCAAGGCCTCGACCCCGCCACGCACAAACCCATGGCCGCCGCCGACA------AGGCCACGG
CGGCATTGCCGGACGCGGAAGACGAAGACCGCAAGCCCCTTGCCGCGGCGG-CCGACAGCAGCCTCGCTCCGAAGCAGCC
GGCGGTGTTCGACCCGTTCCCGGTGTGCGCCGAATAC----------------------GGCGCCAGGTTCGCCGACGAC
CTCGGCGCGGTGAACGCGGCGGCATTGTACGGCCAGTTCTGTGGTGGAAAGGAGGGTGCGGACGAAGACGCCGGGTTCGG
CGCCGCGGACTACAGCTGCGTGCTGGACGTCCCGGAGAACCTGGGCTACT-------ACGGGGAGAGCTCCAGCAACAGC
AGCAACCGGAACTACGGCGGTGAGGTGGGCAGCATGCTCGACGGCGAGGTG-----------------------------
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>chr1B_1001
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-------------------------------------------------ATGGGACGTCCGTCGTCCGGCGGCGTGGGGC
AGCCGAAGCTCCGCAAGGGGCTGTGGTCGCCCGAGGAAGACGAGAAGCTCTACAA--------CCACATCATCCGG----
---CACGGCGTCGGCTGCTGGAGCTCAGTCCCCAGGCTCGCCGGGCTGAACCGCTGCGGCAAGAGCTGCCGCCTCCGGTG
GATCAACTACCTCCGCCCCGATCTCAAGCGCGGCTGCTTCTCGCAGCAGGAGGAGGACCACATCATCGCGCTCCATCAGA
TCCTCGGCAACAGGTCCGCACAATTGCGAATTCGCAGTGCAATGCGTTCTTCAATGACAATTGCAATTTTTTAGTCAGTC
TTCTTCAG-----------------------------------------------A----TACTGATG-----CGTGTCC
GCGTGCAGGTGGTCACAGATCGCGTCGCACCTGCCGGGCCGGACGGACAACGAGATCAAGAACTTCTGGAACAGCTGCAT
CAAGAAGAAGCTCCGGCGGCAAGGCCTCGACCCCGCCACGCACAAACCCATGGCCAACGCCGACA------CGGCCACGG
CGGCATTGCCGGACGCGCAAGAGGAAGACCGTAAGCCCCTTGCCGCGGCGG-CCGACGGCAGCCTCGCTCCGAAGCAGCC
GGCGGTGTTCGACCCGTTCCCGGTGTGCGCCGACTAC----------------------GGCGCCGGGTTCGCCGACGGC
CTCGGCACGGCAAACGCTGCCGCATTGTACGGCCAGTTCGGATGCGGCAAGGAGGGCGCGGACGACGACGCCGGGTTCGG
CGCCGCGGACTACAGCTGCGTGCTGGACGTCTCCGAGAATCTGGG---CT-------ACGGGGAGAGCTCGAGCAACAGC
AGCAACTGGAACTACGGCGGCGAGGTGGGCAGCGTGCTCGACGGCGAGGTGCCG------CACTGGGGCAAGGCGGAGAT
GGAGCAGCAGCACA---CACCGC---TGGGGCACAAGTTGTCGCTGCCCTGCCAAGAACAGAGCCTC-------------
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>chr1A_1228
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----------------------------------------------------------------------CTCCACCAGA
TCCTAGGCAACAGGTCTGTCCGCG-----------CGCGCAATGCATCC---AGTTCTTATTAATTTTGCA---------
--------TCGCGGAGGTTGATTGGAGCTAGCAGAAAGATTTGGGGC-AACATACCGAATTACTGATG-----TGTGTGT
GCGTGCAGGTGGTCTCAGATCGCGTCGCACCTGCCGGGCCGGACGGACAACGAGATCAAGAACTTCTGGAACAGCTGCAT
CAAGAAGAAGCTCCGCAAGCAAGGCATCGACCCCGCCACGCACAAGCCCATGGCCGCCGGCATGATCACGGCGGCCACCG
CAGCATTGCCTGACGCGGAAGCGGTTGACCGTAAGCCCCTTGCCGCGGCGG-CCGACGGCAGCCTCGCTCCGAAGCAATC
GCCGGAGTTTGACCCGTTCCCGGTGTGCGCCGACTAC----------------------GGCGGCGGGTTCGCCGGCGAC
CTCGGGGCCGCGAACGCGACCGCACTGTACGTCCAGTTCGGCGACTGCAAAGACGGCGCGCACGGCGACACAGGGTTCGG
CGCGGCGGACTACAGCTGCGTGCTGGACGTGTCGGAGAACCTGGG---CT-------ACGGGGAGAGCTCGAGCAACAGC
AGCAACTGGAACTACGGCCGCGAGGTGGGCAGCGTGCTCGACGGCGAGGTGCTG------CACTGGGCAAAGGCGGAGAT
GGAGCGGCAGCACGACGAGCCGCC---GGAGCACAAGTTCGCGCTGCCCTGCCAAGAACAGAGCCTCCTCGCAAATTTCG
AGTTCAATTTGGAACAATACTTCT-GATCTTCTCTTTCT-----------------------------------------
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>chr1A_1345
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------------------------------------------------------------TACTGATG-----CGTGTGT
GCGTGCAGGTGGTCTCAGATCGCGTCGCACCTGCCGGGCCGGACGGACAACGAGATCAAGAACTTCTGGAACAGCTGCAT
CAAGAAGAAGCTCCGGCAGCAAGGCCTCGACCCGGCCACGCACAAACCCACGGCCGCCGCCTTCA------CGGCCACGG
CGGCATTGCCGGACGCGGAAGAGGAAGACCGCAAGCCCCTTGCCGCGGGTG-CGGACGGCATCCTCGCTCCGAAGCAGCC
GACGGTGTTCGACCCGTTCCCGGTGTGCGCCGACTAC----------------------GGCGCTGGGTTCGCCGACGAC
CTCGGCGCGGCGAACGCGGCGGCATTGTATGGCCGGTTCTGCGGTGGAAACGAGGGCGCGGACGAAGACGCCGGGTTCGG
CGCCGCAGACTACAGCTGCGTGCTGGACGTGTCGGAGAACCTGGG---CT-------ACGGGGAGAGCTCCAGCAACAGC
AGCAACCGGAACTACGGCGGCGAGGTGGGCAGCATGCTCGACGGCGAGGTG-----------------------------
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----------------------------------------------------------
>SNPs
------S----------S--------------------------------------------------------------
----------------------S----SSS------------------------SSSSSSS-------------------
S---S---S-------------------------------------------------------S------------S--
S--S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------SS-----------------------SSSSSSSS----------------------SS-----------
------------S----S---------SSSS-------S-S----------------------------S-----SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-------S-----------SSSSSS--SSSS---------------
------------------------------------------S------------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S-S--------SSS----S-SS------S---------------------------S----------SS
S------------------------------------------------------------S------------------
-----S-------------------S---S-S--SSSSSSSSSSSSSSSSSSSS---------------------S----
---S------S---S-S---S-S------------------------S------S-------SSSSSSS-----------
------------S------------------------------SSS--S-----------------------S-------
----------------------------------------------------------------------------SSSS
SSS---------S-S--------------------------------------S--------------------------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
S---S----------------------------------------------S----------------------------
----------S----------------------------------------------------S-------------SSS
SSS-------------------------------S---S--------------------------S-----SS-------
----------------------------S---------------------SSSSSSS---------------------S-
--------S--------------------------S-------------------------S------------------
-------------------------------------S--------S---------------------------------
-------------SS-----------------------------------S-----------------------------
-----------S------------------------------------------S---------------S---S-----
-------------S-S------S----S---------S--------------------S-------S-S-----------
-SS---------------------------------SSSSSSSSSSSSSSSSSSSSSS
>forward_1908
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------TTGGCTAGCTGCTTAGCTCG------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>reverse_2829
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------ATGTCGGAGAACCTGGGCTA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
