>input_sequence_86320
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-----------------------------------------ATGGAGAATTCCTGGGACGAGGAGGGGCGGCGGCTGGCG
GCGGCGCGGGTGGTGCACAGCCAGGTGAGGAAGATCAAGGAGGAGGAGGGCGACAAGGTGAAGGTGGACGACACGTACCA
GCAGCAGCAGCAGCTGGCCGAGATGCGCCTCGTCCTCCGGGACCTGGGCCGGCAGCGCTCGCGCTCGCCGCTCGGCCGGG
TGGGCCGCCCCGCCATCTCCATCGGCGGCGACTCCTAG------------------------------------------
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>chr6D_1_TraesCS6D01G276500
AAGGCTCCTCCGCGGCACACACACACACCTGTCCGCCCA---TCCGGCCACACGAACGCGCGTCGGCCGATCCACCCGCG
GG-----------------CACCCTTCGCCTCGATGGACAGCCACCGCTTTGCGGCCACCCTTCCCGTTTCTATCCAAAC
CAATTCCACGCGTTCATTCATGGCTTTGCGGCTGCCGTTCCGCCCTC--CCCGATCACACAACAGCCACCACATAAAACC
TGACGCGTCCTTTCGCCACCTGCAATCAACAGCGCGCCCGCACTGTCGCAAACATGGCGTATACGA---TACGTATCCGT
CTGTTCCTCGGCTCCCACAACT-CACACGCACAACTGACTGACTGACTGAAAACAAAACAGCACAGAAA-----------
--------AGCTTATTTTTAGAAGACCAGTTGGATTGGAATTGGATAGACGAGCTATCCAAACAAAC------------T
GAAAAAAAAAAGCAGAAGCAACAGCCGGGCAGGAGGGCACGTGGAGGGCCCGTTGTGCGGATAGGCACCGTCGACCGCCA
CAACGGACGGCAGGCGCACAACGTCGACCCGTA--------CACGTCGACGGGCCGTGAACGGATATGCATCCCTTTTCT
TTCTTTCTTTTTC--------------TGACATGATATGCGTCCCTTTTCACGAGATCGACCAAGAAAGCGACGGCGGAA
AGCG-GGGGAGGCGCCGCGGATGGATCGGGTAAACCGGGG-CGGGGTTGGACACGCGGTACGCTGCGTGCGCTCGTCGCC
CCAGCAAAAACGGCACGGATGTGTGGGGAACCGGTCAGGGGCCCCCCGTCCCGATCCCGTCCCGTTCCACACCGCCATAC
GTGGCCCCTATTTATGCGGCCCGTCTCATGCAGCGCATGGGCTGGGCTGGGTTCAACCGGTAGCACTGGTGCATTTACAC
ATCTCCCATCTCCCATCTCGTCTCGTCTCGTCTCATCGGCGGTCGTCGTCGTCGTCGTCATCATCCGGAGGCGCAAGAAA
GCTCAGAAGAAGAAGCCACGTCCGGCACGTAAGGTCCGGCGATGGAGAATTCCTGGGACGAGGAGGGGCGGCGGCTGGCG
GCGGCGCGGGTGGTGCACAGCCAGGTGAGGAAGATCAAGGAGGAGGAGGGCGACAAGGTGAAGGTGGACGACACGTACCA
GCAGCAGCAGCAGCTGGCCGAGATGCGCCTCGTCCTCCGGGACCTGGGCCGGCAGCGCTCGCGCTCGCCGCTCGGCCGGG
TGGGCCGCCCCGCCATCTCCATCGGCGGCGACTCCTAGTCCTAGGGCCGGCCATCCTTTTTTTTATTTTCTAGCTGGGTC
GTCGTCGTC---CCCTCGTGCAATCTCGCCGTGTATTAGGA--------------TTTT-----CTTTTTCCTTTTCTTT
GGTGATCCTGTCCATCCGTAGATGGGGCAGAGGATCATCTTCTGCTGGTGGTTAGGGCGT----CGTTCCCATCTCTCCA
TGATGGTTGTGTAAATACTTCATACTCATTTGTGTGAGTTGTCAGTCTCTTCCTTTTTTCAGTTTAGGAAACAAAAAAAC
GAATTTTGGATGGTGCTGCGTTTTTATTTTATTTTATTCTATTTATTATGACTGCGATTGTGAAAAGAGATTGTGCATAG
AGCTT-----TAGATCAGAGCTCTGTGCTATGGGTCTCAAGGTGTCAACTC-TTCTTATCTTGCCTGAAGATGT------
-------------------------------ATGTCAACTCTTATTTGAACTACGTCCGCCAATACCAATAAATCAGAAC
TGTCCGCCAAATACGAAGGAGACCAATAAACCAGAACGGAGGCAGTACCTCTCAACAATGCGGTTC---AGTTAAAAGAT
TGCCTATTACCTGG---AGAATCGGTTAACGATAACGCGACAGGATT---------------------------------
--------------------------------------------------------------------------------
------------AGTGCAACTTACATTTCTTT--------------------------------GTACATTCATTGCGCA
GAGACTGG---TTGCAGTAATTATTCCAGGATAATTTAAGACACCCCTTGATCTAATACTAACACAGGAGTGACATGTTA
CATGTGTAAAACGCCTCTCATACGCGGATCAGGCAGGCTATATATACACATTCAGTTCTGGTTGCTGCACACAAAATAGA
GGAAATGGTGAAAGATCAAAACTGGGGATTTATTTGTT--ATATATCCAGTAATCATCAATACAGAAATAGTAGTTGAAT
GTTCAAAAGGGAGTTATCACAAAATGTTTACATCCTAGGCAGTAGATTTCTCTGGAGATAGCGACTTGATTCTCCGACTA
AGATTTTGCATTATGTCGACGAGCATCAGCTTCTTCTGCAATCTAAACTGGACGGCCAGTTCAGTTGTAAGAGGG
>chr6A_1
AAGGCTCCTCCGCGGCGCGCACACACACACACCCGTCGGCCGTCCGGCCACACGAACGCGCGTCGTCCGATCCACCCGCG
GGCGCGGGGGCTGTGCGGCCACCCTTCGCTTCCATCGACAGCCACTGCTTTGCGGCGGCCCTTCCCGTTTCTATCCAAAC
CAATTCCACGCGTTCGTTCATGGCTTTGCGGCTGCCGTTCCGCCCTCTCCCCGATCACGCAACGGCCACCGCACAAAACC
TGACGCGTCCTTTCGCTACCTGCAATCAACAGCGCGCCCGCACTGTCGCAAACATGGCGTATACGACTATACGTATCCGT
CTGTTCCCCGGCTCCCACAGACCCACACGCACAACTGACTGACTGA---AAACAAAAACGGCACGGAAATACTCAAATGG
ATTTGCACGGCTTATTTTTAGAAGATCAGTTGGATTGGAGTTGGATAGACGAGCTATCCAAACCGAGCTGAAGCAACAAT
GAAAAAAAAAAGCAGGAGCAACGGCCGGGCAGGAGGACACGTGGAGGGCCCGTTGTTCGGATAGGCACCGTCGACCGCCA
CAACGGACGGCAGGCGCGCGACGTCAACCCGTACACCGGTACACGTCGACGGGCCGTGAACGGATATGCATCCCTTTTCT
T----TCTTTTTC--------------TGACATGATATGCGTCCCTTTTCACGAGATCGGCCAAGAAAGCGACGGCGGAA
AGCGGGGGGAGGCGCCGCGGATGGATCGGGTAAACCGGGG-CGGGGCTGGACACGCGGTACGCTGAGTGCGCTCGTCGCC
CCAGCAAAAACGGCACGGATGTGTGGGGAACCGGTCAG----------TCCCGATCCCGTCCCGTTCCACACCGCCGTAC
GTGGCCCCTATTTATGCGCCCCGTCTCATGCAGCGCATGGGCTGGGCTGGGTTGAACCGGTGGCACTGGTGCATTTACAC
ATCTCCCA-----------------TCTCATCTCATCGGCG------GTCGTCGTCGT---CATCCGGAGGCGCGAGAAA
GATCAGAGGAAGAAGCCACGTG---------AGGTCCGGCGATGGAGAATTCGTGGGACGAGGAAGGGCGGCGGCTGGCG
GCGGCGCGGGTGGTGCACAGCCAGGTGAGGAAGATCAAGGAGGAGGAGGGCGACAAGGTGAAGGTGGACGACACGTACCA
GCAGCAGCAGCAGCTGGCCGAGATGCGCCTCGTCCTCCGGGACCTCGGCCGGCACCGCTCGCGCTCGCCGCTCGGCCGGG
TCGGCCGCCCCGCCATCTCCATCGGCGGCGACTCCTAGTCCTAGGGCCGCCCC-CCTTTTTTTTATTTTCTAGCTGGGTC
GTCGTCGTCGTCCCCTCGGGCTCTCTCGTCGTGTATTAGGA--------------TTTTTCTTTCTTTTACTTTTTCTTT
GGTGACCCTGCCCATCTGTGGATGGGGCAGAAGATCGTCTTCTGCTGGTGATTAGGGCGTCCT-------------TCCA
TGATGGTTCTGTAAATACTTCATACTCCTATGTGTGAGTTGTCAGTCTCTTCCCCTTTCCAGTTTAGGAAACAAAACAGG
AGTTTTTGGATGGTGCTGCGTTTTTATTTTGTTCTATTTAAT---TTATGCCTGCGATTGTGAGAAGAGATTATGCATAG
AGCTTTAGGTTAGATCAGAGTTCTGTGCTATGGGTCTGAAGATGTCC------TCTTATATTGCTTGAAGATGTCAACTC
TTATCTGAAATAGTACATCTTTTCCCTGAAGATGTCAACTCTTATCTGAACTATGG------------------------
--------------------------------------------------CTCAACAATGCCTCCGTCGAGTTACGAGAT
TGCTGATTACCCGAAGAAGAACCAGCTAATGACAACATGACGGGATT---------------------------------
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------------AGTACAATAATATTTAGTGATCTAAACAATCTTATATTTTTTTACAGAGGGAGTGCATTCATTGCCCA
GAGACTGATGATTGCAGTAATAATTCCAGGATAACTTAAGATGCCCCTTGATCTAATACTAACACAGGAGTGACATGTTA
CTTGTGTAAAACGCCTCTCATA--------------------TATACGCATTCAGTTCCGGTTGCTGCGCACAAAATAGA
GGAAATGGTGAAAGATCAAAATTGGGGAATTTTTTTTT--A---------------------------------------
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>chr6B_20
-------------------CACGCACACCTGTCCC---GCCGTCCGGCCACACGAACGCGCGTCGGTCGATCCACCCGCG
GGCGGGTGGGCTTTGCGGCCACCCTTCGCCTCCATCGACAGCCACTGCTGTGCGGCGGCCCTTCCCGTTTCTATCCAAAC
CAATTCCACGCGTTCATTCATGGCTTTGCGGCTGCCGTTCCGCCCTC--CCCGATCACACAACGGCCACCACATTAAAAC
TGACGCGTCCTTTCGCTGCCCGCAATCAACGGCGCGCCCGCACTGTCGCAAACATGGCGTATACGACTATACGTATCCGT
CTGTTCCTCGGCTCCCACAGGCCCACACGCACAACTGACTGACTGA---AAACAAAAACGGCACGGAAACACTCAGTTGG
ATTTGCACAGCTTATTTTTAGAAGACCAGTTGGA------TTGGATAGACGAGCTATCCAAATCGAGCTGAAGCAACAAT
---AAAAAAAAGCAGGAGCAACAGCCGGGCAGGAGGGCACGTGGA-GGACCGTTCAGCGGATAGGCACCGTCGACCGCCA
CAACGGACGGCAGGCGCGCGACGTCAACCCGTAC--------ACGTCGACGGACCGTGAACGGATATGCATCCCTTTTCT
T----TTCTTTTCTTTTTTTGATTGATTGACATGATATGCATCCCTTTTCACGAGATCGGCGAAGAAAGCGACGGCGGAA
AGAGGGGGAGGTGCCGC-----GGATCGGGTAAACCGGGGACGGGGTTGGACACGCGGTACGCTGCGTGCGCTCGTCGCC
CCAGCAAAAACGGCACGGATGTGTGGGGAACCGGTCAGGGCCCCCCCGCCCCGATCCCGTCCCGTTTCACACCGCCATAC
GTGGCCCCTATTTATGCGCCCCGTCTCATGCAGCGCATGGGCTGGGCTGGGTTGAACCGGTAGAACTGGTGCATTT-CAC
ATCTCCGGTCT-------CGTCTCGTCTCATCTCATCGGCGGTGGTCGTCGTCGTCGT---CATCCGGAGGCGCGAGAAA
GATCAGAAGAAGAAGCCACGTG---------AGGTCCGGCGATGGAGGATTCGTGGGACGAGGAAGGGCGGCGGCTGGCG
GCGGCAAGGGTGGTGCACAGCCAGGTGAGGAAGATCAAGGAGGAGGAGGGCGACAAGGTGAAGGTGGACGAGACGTACCA
GCAGCAG---CAGCTGGCCGAGATGCGCCTCGTCCTCCGGGACCTGGGCCGGCAGCGCTCGCGCTCGCCGCTCGGCCGGG
TCGGCCGCCCGGCCATCTCCATCGGCGGCGACTCCTAGTCCTAGGGCCGGCCTTGCTCTTTTTTTCCTTCTAGCTGGGTC
GTCGTCGTCGTCCCCTCGGGCTCTCTCGTCGTGTATTAGGACCTCTTTTTTTTCTTTTC-----CTTTCTCTCTTTCTTT
GGTGATCCTGTCCATCCGTGGATGGGGCAGAGGATCATCTTCTGCTGGTAATTAGGGTGTCGTTCGTTCCCATCTCTCCG
TGATGGTTGTGTAAATACTTCATACTCCTATGTGTGAGTTGTCAGTCTCTTCCCTTTTCCAGTTTAGGAAACAAAACAGG
AATTTTTGGATGGTGCTGCGTTTTTATTTTATTCTGTTCTATT---TATGCCTGCGATTGTGGAAAGAAATTATGCATAG
AGCTTTAGATTAGATTAGAGTTCTGTGCTATGGGCCTGAAGATGTCAACTCTTTCTTATCTTGCCTA-------------
----------------------------AAGATGTCAACTCTTATCTGAACTATGG------------------------
--------------------------------------------------CTCAACAATGCCGTTC---TGTTACGAGAT
TGCAGATTACCCGAAGAACCGGCTAAT----ATGACACAACAGGATTAGTATTTAGTACTCCCTCCGTTTGGAATTACTT
GTCACAAAAATGGATGTATCTACAACTAAAATACATCTAGATACATTCATTTCTTCGACGAGTAACTTCGACGAGTAATT
CCGAACAGAGGGAGTACAACTTACACTTCTTT--------------------------------GTACATTCATTGCCCA
GAGACTGG---TTGCAGTAACTATCCCAGGATGATTTAAGATACGCCTTGATCTGATACTAACACAGGAGTAACATGTCA
CATGTGTAAAACGCCTCTAATATTCAGATCATGCAGGCTATACATAGTCAATTCTACTAGTTGCTTGT-CAAACAATAGG
GGAAATGGCAAAAGATCAAAACTCGGGATTCATCCTTATAATATATCCAGTAATCATCAAACAGAAAGATAGTTGATTGT
CG---AAAAGGAGTTATCACAAATTGTTAACATCCTAGGCAGTAGATTTCTCCGGAGACAGCGTCTTGATTCTCCGACTA
AGATTCTGCATTATGTCGACGAGCATCAGCTTCTTCTGCAATCTAAACTGGACGGCCAGTTGAGTAGTAAGAGGG
>SNPs
----------------S-S----------------S-SS-----------------------------------------
--------------------------------S--S---------S----------SS----------------------
---------------------------------------------------------------S----------------
----------------S---------------------------------------------------------------
-------------------SSS------------------------SSS---SS-----S----S---------------
---------------------------------------S-----------------------SS-S-------------
---------------S----------------------------------------------------------------
-----------------S-S-----S------------------------------------------------------
-SSSS------------------------------------------------------S--------------------
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----------------------------------------S---------------------------------------
------------------S----------------------------------S--------------------------
-----------SSSSSSS-----------S-------------S--------------SSS-------------S-----
-S-------------------SSSSSSSSSS---------------------S-----------S---------------
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-S--------------------------------------------------S---------------------------
------------------S--SS-----S------------------------------------------S--------
-------------------S------------------------------S-----------------------------
---------------------------S-S-----------------------S----S-----------------S-SS
S-S------------------------------S---------SS-----S---------------------S-------
--------------------S----------------S---S--------------------------------------
---------------------------------------------S-------S-SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S------------SS----
---SS------S-S-------S-S-S---S------S-------------------------------------------
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---------------S-------------------------------------------------------------S--
-----------------------------------------S--------------------------------------
----------------------SS-S-----S---------------S----------S---------S-----------
-----------------------------------S------------------------SSSSS--SSSSSSSSSSSS-
SSSSS---S--------------S----S-----------------------S-----S----S----------------
-----S-------------------------------------------------------S---S---------
>forward_1064
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----AGAAGAAGAAGCCACGTCCG--------------------------------------------------------
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>reverse_2264
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-----------------------GCGGATCAGGCAGGCTATAT-------------------------------------
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