>input_sequence_86318
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--------------------------------------------------------------------ATGGATCAGGGC
TGGGCGAGCTGGTTCGGCGCCGGCGTCACCTCCGCCTTCTTCGCCTCCCTCGAGCGCTGCTCCTGCATCAACCTCTCCAC
CGACGACGACGACGACGACGC---------CGACGACGCCCTCATGCTCTCCGCCGCCGCCCCCTCCGACCAGCCCCAGC
TCGACGCCGCCCCCGCC------GTCGCCGCCGACAAGGAGGAGGGGCAGGAGCAGGGGCCTCCCCTCCCGCCCGTATGA
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>chr6B_1_TraesCS6B01G455500
CTGAATTGCCTCAAATTCAACCAGCTTAACTTATGGAGTGTTTTTCAAAAAAAAAAGATTA---AACTTATTGGATTACT
CAAAAGTCAGAGAATCCCCCTATGAT-CCCCTAAATAAATAGACATTCCCATGCGCCATACATT----TGGACCCAGCTG
GGAAGCTATTGTAACTTCTAAGTGCACCTTGCAAAACCTGCACATCCAAGTGGCCACCTC------GAAAGATGGTCTCC
GGCGCTTACCGCTAGGTCGCCGCCAAAGACCCGGCGGATCACAACCGCAACTTTCTCTTCAACCGTGCAAAGAGCCACCA
CCAAACACGTGGAGGTGAATTATGAAGCGGGCATGTGCAGTGAAGCAACAAGATGATGAGCCCATGCGGCAAATGGAGGA
GCGTGCGG--CCGGGAGTGACAAGCCGACGAGGAAACACACAAGGGGCAAGATTTTTTTTTTTGCGTCGAAAGGGTGGGG
CACAGATGTCCAACAC-----GCGTGCTCTGATGCCGCGTACATAAA--AAAGCCGTGTGTCGTCACACCGCAAAACCTC
TCCGCATGCCGCCACGCCACACACCCTCTCGTTAGACCAGTGATTTTATTTTCTTTTTGCGGGGCGTTAGGCCGATGATT
CACAGGCGCTTTCACTCCTTTCTGAATTATGATGTGTATTTGGTGCAGTGAATATGTGTAGTAGTTTTGTAAAAAGAAAT
GTTCATCTCATACGGACTAGTTAATATGGTTTTTATGGATGTATATTTGGTGTGCCTTTAATGTGAGAAAAGATCAAAAG
AAGCATTCAAAAAAAAATGAGAAAAGAAAAGGAGCACAACTGTATTTGGGTTGGGGTTGGGGTTGGGGAGAAGTATCCCG
TGGATCTCGCCAAATCCCCATTCCCCTCTCCTCTCCTCTCCTCTCCTTGCAGTGAGTCGTCTCTGCTCTCGCCTAGTCGC
CTACCCGTCTCCCATCCTCCCCACCCCTCTCACCGCCGAACCCTAGCGAGCAGATCGC-----CGCCGATGGATCAGGGC
TGGGCGAGCTGGTTCGGCGCCGGCGTCACCTCCGCCTTCTTCGCCTCCCTCGAGCGCTGCTCCTGCATCAACCTCTCCAC
CGACGACGACGACGACGACGC---------CGACGACGCCCTCATGCTCTCCGCCGCCGCCCCCTCCGACCAGCCCCAGC
TCGACGCCGCCCCCGCC------GTCGCCGCCGACAAGGAGGAGGGGCAGGAGCAGGGGCCTCCCCTCCCGCCCGTATGA
CCCGCTCCCCACATCCAT--------------------------------------------------------------
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-----------------------------------CCATCGCTTGCGTACGCCTTACTCCTCGTCCCGTCTGAGTCCCGT
CCGCGTCCTGTGCTCTAGATCTGA---TGAACTGCTGCTCC----------TGGCCGACTAATAAATCCTGCCGATTTTG
TTGCTGGCCATG-----TTAAATTAATTGAATTAGTAGTACTA-------------T-----------GCGTGTGTGTGT
AT-----------GCCATGGATTCCTGTTG-TTGTGTTCATGTGAA--TATCATCATGCCGTCGTGTGGTAATTTCTTTC
GTAGCGGATCGATGTGCCGGATGGACGATGGATCAATCTCTATATATCATCTGTTGTTGAATTGCTGCCCTGTGG----A
TGAATGATTCTACGCTCTGCGATGAACAGGTCGATTTGCGGCATATGGCTTGTCGACCTGTTCATGTAATGAGTTGTTGC
TTGCCACAGCATATAATAGATCCCTGATGGATGAAAATGGCCAATGAAATGCTTTCAAATGATTTCTTTGATTTTCCCCC
CTCATGTCTTAAT-----------GATTGTGTGATGCCCAATGTAATGCTTGCATATGTTGTCCACTCTCCACTCTTGGT
CAAATATGATACTACAAAATAATCTATGGGGTATTGAAGAACTGCATGTGTTTCGTCATCGTGTTAATGTGTATACTCCT
ATAAACAGAGTACTGCATCGGACGGTTCACTGCATACATGATGACATACCCTGTATCGTCCAGAGAACTAACTACATCCA
TGAATCGCTTTCCTGTCATTATATGATGATGGACATGTTGAAGATGCACTTGTTGAAGTGGTTGTATGCTTCAGTTAGCC
TATTATTGTACACCATCAGTTCTGTAGCTG------TGTCGAGATCGATCTGGTGGCTCTCGTGATTGGACTAAGCTTGT
TCATATAACCAATTGGTAGGGTTTTGCTCTAGACTGT----------TGACGAAGATCCGTTTGATAGTGCTTGCCTGTT
TGTGTTTATGTGGATATTATGCTTGTCCTGTAACTTGTGGCGGATTGCTCTATGTCGGATGAAA
>chr6D_1
CTGAATTGCCTCAAATTCAACCAGCTTAACTTATGGAGTGTTTCT--AAAAAAAGGGATCA---AACTTATTGGAGTACT
CAGAAGTCAAAGAA-CCCCCCATGAT-CCCCTAAATAAATAGATATTCCCATGCGCCACACATTAATTTGGACCTATCTC
AGAAGCTATTCC------TAAATGTACCTTGCAAAACCCCCACGTCCGAGTGGCCACCTCGAATTCGAAAGATGGTCTCC
GGCGCTTGTCGCTAGGTCGCCGCCAAAGACTCGATGGATCGCGATCGCAACTTTCTCTTCAATTGTGCCAAGAACCACCA
CCAAACACACGG-GGGGAAGGATGAACCGGGCATGTGTAGTGAGCCAACAAGGC---GAGGCCATGCGGCG-ATGGAGGA
GGAGGCGTGACCGAGAGCGACAAGCCGAC--------ACACAAGGTGTGAGG------TTTTTGCTCCGAAAGGGTGAGG
CACAACCGTCCTCCACTTGACGCGTGCTCTAATGCGTGCCTCGCACATTAGATCCGTGT---------------------
----------GACAAACCACACGCCCTTTGGTCGGACCGACGAT------------------------------------
----GACGCCTTCACTTCCTTTTAAATTTATGACGATGACATAGTACTTCATGTAATTTTGCGC------AAAAAGATAT
GTTTCA-----------TAGTTAGTATGGTCTTCATGGATTTTATATTTG------------------------------
-----------------------------------------GTATTT------GGGTTGGGGTTGGGGAGAAGTATCCCG
TGGATCTCGCCAAATCCCCATTCCCCTCCCCTCCAGC-----------------AGTCCTCTCTGCTCTAGCCTAGTCGC
CTCCCCGTCTCCCATCC-CCCCACCCCGCTGACCC---AACCCTAGCGAGCAGATCGCGTCGCCGCCGATGGATCAGGGC
TGGGCGAGCTGGTTCGGCGCCGGCGTCACCTCCGCCTTCTTCGCCTCGCTCGAGCGCTGCTCCTGCATCAACCTCTCCAC
CGACGACGACGACGACGACGC---------CGACG---CCCTCATGCTCGCGGCCGCCGCCCCCTCCGACCAGCCCCAGC
TCGACGCCGCCCCCGCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATCGCTTGCGTACGCCTTACTCCTCCC-----------CCCGT
CCGCGTCCTCTGCTCTAGATCTGG---TGAACTGCTGCTCGTC---GCTCGTGGCCGACTAATAAATCCTGTCGATTTTT
CTGCTGGCCGGCCATGTTTAAATTAATTGAACTAGTAGTATG----TCTCTCTGTGT-----------GTGTGTGTGTGT
ATGCCATTACCATG---------CCTGTTGTTTGTGTTCATGTGAATATATCATCATGCCGTCGTGTGGTAATTCCGTTC
GTAGCGGGTCGATGTGTCGGATGGATGATGGATCAATCTCTATAT---ATCTGTTGTTGAATTGCTGCCCTGTGG----A
TGG----TTCTACTCTCCGCGATGAACAGATCGATGCGGGGCATATCACTTGTCGACCTGTTCATGCAATGAGTTGTTGC
TTGCCACAGCAT---ATAGATCCCTGATGAGTGGAAATGGCCGATGCAATGCTTGCAAATGGTTTCTTTGATTTT-----
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>chr6A_23
----------------------AGCTTAACTTATGGACTGTTTCT--TATAAAAAGAAAAGTTTAACTTACTGGAGTACT
CGGAAATCAGATAATGCCCCTATGCCCCCCTAAAAAATTTAGACATCCCCATACACCAAACATT----TGGAGCCATCTC
GAAAGCTATTCG------TAAATGTACCTTGCAAAACCCCCACGCCCAACTGCCGCGTG-------GAAAGATGGTCTCC
GGCGCTTGTCGCTAGGTCGCCGCCGAAGACTTAGTAGATCGCAATCGAAACTTTCTCTTCAACCGTGCGAAGAACCACCA
CCAAACACACGG-GGTGAATTATGAAGCGGGCATGTGCAGTGAGCCAACAAGGC---GAGGCCATGCGGCG-ATGGAGGA
GGAGGCGTGACCGAGAGCGACAAGCCGAC--------ACACAAGGTGCGAGG------TTTTTGCTCCTAAAGGGTAAGG
CACAACTGTCCTTCACTTCACGCGCGCTCTAATGTGTGCCTCGCACATTAAAGCCGTGT---------------------
----------GCCGAACCACACACCCTCCGGTGATTTA------------------------------------------
-------------------------------------------------CATATAATTTTGCGC------AAAAAAATGT
GTGTCA-----------TGGTTAGTATGGTCTTCATGGATGTGTATTTGGTATGCAGTTAATGTGAGAAAAGAACCTCTG
-----------------------AAAAAGAGGAGCACAAGTGTATTT------GGGTTGGGGTTGGGGAGAAGTATCCCG
TGGATCTCGCCAAGTCCCCATTCCCCTCCCCTCCCCTCTCCTC------CAGTGAGTCCTCTCTGCTCTCGCCTAGTCGC
CTCCCCGTCTCCC----TCCCCACCCCTCTCACCC---AACCCTAGCGAGCAGAT--------CGCCGATGGATCAGGGC
TGGGCGAGCTGGTTCGGCGCCGGCGTCACCTCCGCCTTCTTCGCCTCGCTCGAGCGCTGCTCCTGCATCAACCTCTCCAC
CGACGACGACGACGACGAGGAAGAGGCCAACGACCGCCCCCTCATGCT------CGCCGCCCCCTCCGACCAGCCCCAGC
TCGACGCCGCCCCCGCCCCCGCCGTCGCCGCCGGCAAGGAGGAGGAGCAGGAGCAGGGGCCTCCCCTCCCGCCCGTGTGA
CCCGCTCCCTCCTCCCAT--------------------------------------------------------------
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-----------------------------------CCATCGCTTGCGTACGGCTTACTCCTCCC-----------CCCGT
CCGCGTCCTCTGCTCTAGATCTGATGATGAACTGCTGCTCGTC---GCTCGTGGCCGACTAATAAATCTCGCCGATTTTG
TTGCTGGCCTGCCATGTTTAAATTAATTGAATTAGTAGTATGCCTATCTGTGTGTGT-----------GTGTGTGTGTGT
ATGCCAT------GCCATGGATTCCTGTTG-TTGTGTTCATGTGAA--TATCATCATGCCGTCGTGTGGTAATTTCTTCC
GTAGCGGATCGATGTGTCAGATGGATCATGGATCAATCTCTATAT---ATCTGTTGTTGAATTGCTGCCCTGTGAATGAA
TGG----TTCTACGCTCCGCGATGAACGGATCGATTTGCGGCATACGGCATGTCGACCTGTTCATGTAATGAGTTGTTGC
TTGCCACAGCATATAATAGATCCCTGACGAGTGGAAATGGCCGATGCAATGCTTGCAAATGGTTTCTTTGATATTTTTCT
CACAAGTCTTGATGCCTCGTCTTGGATTGTGGTATGTTAAATGGATGGATTGTG--------------------------
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----------------------------------------------------------------------TCAGTTAGTG
TATTGTTGTATGCCATCAGTTCTGTGGCTGTGTGACTGTCGAGATGGACCTGATGGCTTTCGTGATTGGGCTAAGCTTGT
TCATATGAGCAATTGGTAGGGTTTTGCTCTTAGACTGCTGATGAAGATGCCAAAGATCCGTTCGACCGTGCTTGCCTCA-
TGTGTTTATGTGGATATTATGCTTGTCCTGTAACTTGTAGCGGATTGCTATATGTCGTGTGAAA
>chr5D_1014
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-GGGCGAGCTGGTTCGGCACCGGTGTCACCTCCGCATTCCACGCCTCGCTCGAGTGCTTCTCCAGCATCAACCTCTCCAC
CGACGACGATGACGAGGAGGAAGATGCGAATGA-----------------------CCGCCCCCTCCGACCAGCCCCACC
ACGACGCAGCTCCCGCCCCCGCCGA---CGCCCGCAAGGAGGAGACGACAG---AGGAGCCTCCCCTCCCGCCCGTGTGA
CCGGCTCCCTCC-CCCAT--------------------------------------------------------------
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-----------------------------------CCATCGCTTGCGTACGCCTTACTCCTG-----------GTCTCGT
CCGTGTTCTTTGCTCTAGATCTGA---TGAACTGTTGCTTGCTGCTGCTCGTGGCCGATCAATAAATCTCGCCGATTTTG
TTGCTGGCCATG-----TTTGCTTAATCAAATTAGTAGTGTG----TGTGTGTATCCTAAAAAAAGTAGTATGTGTGTGT
ATGACAT------G---------CCTGTTG-TTGTGTTCATGTGAA--TATCATCATGCTGTCATGTGGTAATTTCA---
-TAGCGGATCGATGTGTTGGGT----GATGGATCAATCTCTATAT---ATCTACTGTTGAATTGCTGCCCTATGC----A
TGG----TTCTACGCTCTGCGATGAATAGATCGTTGCGCGGCAA--GGCTTGTCGGCCTGTTCATGTAATGAGTTGTTGC
TTGCCATAGCAT---ATAGATCACTTATAAATGAAAATGGCC--------------------------------------
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>SNPs
-------------------------------------------S-SS--------S---S---------------S----
--S-------------------------------------------------------S-----------------S--S
----------SSSSSSSS---S--S-------------SS---S------------------------------------
-------SS---------------------S---S-----S---S-----------------------S----S------
--------SS--S------------------------------SS-------SSSSS---S---------SS--------
-SSS---S-----S---S-----------SSSSSSSS--------S--S--SSSSSSS-------SS----------S--
----SS-----SS-----------------S----SSSSSS-SS-S-------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS----SS-------------S--S-----SSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-S---S------S-S--S-S----SSSSSSSS-SSSSSSSSSSS-S-SSSSS-S-S-SSSSSSSSS-------S--
---SSSSSSSSSSSSSS------S------S--S--------S--------S---SS----------------S-SSSS-
SSSSSSSSSSSSSSSSSSSSSSS--S--S----------S-------SSSSSS---------------------------
----------------------------S----S---------SSSSSS---------S---------------------
--S-------------------------------SSSS------------------------------------------
-----------------------------------------------S--------------------------------
-----------------------------------S-S-----------S-S----------------------------
---------------------------------S-----------S------------------------------S---
---------SS-SS------------------------------------------------------------------
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--------------------------------------------------------------SSSSSSSSSSS-------
---------S------------------------------S---------------------------------------
----------------------------------------SSS--------------------------S----------
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----------------S--------S-------------------SSS--------------------------------
--SSSSS----------------------S--------------------------------------------------
-----------------------------S------------S---S-------S------S-------------SSS-S
-S--S-----S--------------------SS---SSS----S-SS-S---SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------SS
----S-----SS-------------S-------------------S--S---S-----S----------S----------
------S-S---------------------SSSSSSS------------S-S----------S--SS----------SSS
--------------------------------------S----------S-------SS-----
>forward_939
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---------------------------------------CCTCTCCTTGCAGTGAGTCG---------------------
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>reverse_2250
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---------GTACTGCATCGGACGGTTCA---------------------------------------------------
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