>input_sequence_86312
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---------ATGTCGAGCCTGATAGATATTTGGACGGTGGAGGTGGACAGGATCCGGGCCATGAGGAGAACGGTGGAGCC
GTTCAGACCCACGGCTTCGCCC---------GGCGCACAAGAAGCCGGCCACGTAGCTCAGCCGTCCG------GCGACG
GA---------------------------------------GCCAAGGATCAGGCT------GCTGGTGCTGGCTCGCCG
GCGTCGCCGGTGCTCGTCCGGGAGGACGCCTTCTTGTCCATCCTGGTTGATTGTTTCGGTCAGTAG--------------
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>chr5D_1_TraesCS5D01G412900
GGGAAAAAAATTATATGAGACCAGGTCTCACGGTTAGCAGGTGAGACCTGCCCTGATGGATGACACGTGGCATTCATAAA
TCACAAAGCATCTAATCTCTCCCTCCCTGATTTTAAGTGGGGGTGGGGGTAGATGCTTTGTGACTCCATCTCGTGGTAAG
TTTGCACTAGCAGTCGATCAATACAAATACCACAAAAAAGCAGTCATCAGCTAGCTTGGTAAACATGCTACCAGTCTACC
ACACCCGTAGGACCTGCCATGGTTGGCTCTCTTTTTTTAACAAAGCAAGGCACCTAGAAGGTGCCCAATTTCCATTGACA
GCTTAAAGAGTCATTACAAAGTTACAAAAACATCAC-AAAAACTGCACAGAGAACAGCATAATTCACACAGTTACAAAAA
AAATTACCGCCTTGTAGAAAGATTCTAGAC--AGAGTTGGCGTTCGTAAGCAGAGACATGAGGAGGCAGCCAGAGTCAAT
TTCAGCAGCAGGAGCGATGGCAACAGCAGAA--------CGGTCCCCCTGATATACCTCCGTAGTTGTCGCAGTCAGAT-
-------AGCCCACGGTACCGCCTT---TCCACCCACGGTAA-TGCCCAACTGCCCGCCGCCGCTGCCCCGCTGCGCCTA
CCATCAATCAATCAGAGAAAAACACGTGTTATCAGTCGGAGCACAATCAAGCGGCGAC----------------------
---CTTCCAGAGCGACAAGAACATTCCTCTAAAAAAAGTGAAAAAGCTGCAATCCTGTGTGCTGAAGCACCAAGTATACC
CTGAATCCAACAAACTCCAAGAGCCATTCCAGGCCATGGCGCCTCTGCAGAGCTCCTCAACTAGTCAATCG-TGCCTAGT
ATTTATCTGCACATGGAGAGCCCGCAGGCACCTCTATAAAAGTGCATCGCCCTTGCTGCCCACGCACACTGAAGATCTCC
CCGATCGATCCTCGCATTCAGCTTGTCACTCTCTGTCTCTCTTGTAGCTCGGCTCAGTTGTTCTGTTCCCTGCAAGCCGC
GACCGATCCATGTCGAGCCTGATAGATATTTGGACGGTGGAGGTGGACAGGATCCGGGCCATGAGGAGAACGGTGGAGCC
GTTCAGACCCACGGCTTCGCCC---------GGCGCACAAGAAGCCGGCCACGTAGCTCAGCCGTCCG------GCGACG
GA---------------------------------------GCCAAGGATCAGGCT------GCTGGTGCTGGCTCGCCG
GCGTCGCCGGTGCTCGTCCGGGAGGACGCCTTCTTGTCCATCCTGGTTGATTGTTTCGGTCAGTAGATTGCACCGGTCGA
ACGCT-----ATGCAGCAACACGTTCCTAAGCTCTAGCTAGGTGCAACGCAACTGAAGTGTCTTTCGTGATTGCTGTAGC
CTGCTGAATTATCAAGTTCGGCGGCTTCTGAATGTCTCTGTTACAATACAAATCAACGCCTA-----TCTCCAGTCAGGT
CCGTTTTCATGATGGTCCCTAGACGGAAAAAAAGTTCATTTTCATGTGTAT--GTACGATCGATCGGGACGGTGCAACCA
AGTGGGAGGGAGATGTG-ATTCATTACCACCACTCGGGCGGCTAAAGTAGTAGCGAAATATCTCTCTTCATTGAGATATT
TTTGCTTCTTATACATTACCAAGAAGTCGGAGGTTTTTGGAACGGACGAGAAACTCAAACTTGACATAAAGAAATATCTC
GTTTCACTGAGATATTTTGCTTCAATTCTTACCAGAAACTAAGACATGAAGTACAGAAGTTGCATCGTGTGTTAGCCAGT
GCAAACGTTTTCTCTCATGTCTGAACTTCACCTGCCCATGCATACTGAACGTTTTCTCTGAACCTCAACGTTCCCGCTGC
TGCTGCACCTCACAAAACGTTCCGACCTCTGGCGCGCTCCGCGGACCGCGGATCGGGCATAAACCTTGGTCAGATTCTTC
GATCCCCCGGATCAAATACTACGTCCGCGTGGTGCAGGCGTGCAGCGAACCTGGACGGCACAACCATGCGGGCACGGGGC
GCGGTGAGCACGTACGTGAGGGCGACGGTCCGCGTCGCCGGCCGCTGCACTTGCACCCGCCCCCGGGGCAGCCAGTAGTC
AC--CGCGCGCGCAGCATCCTGGCAGCGGCATCTCTCTCCGGATCCGCCCGCGCGCGGAATCAATCGTACGCGCGAGGAT
A-----TCCCCTCTCCACCGCGCGCGCGACGGCAGCCTCACGTTCATTAGCTTGGCCTCCGATCGCGCGTCTCGCCGCGC
CGTGCGTCACATGGCAAATGCACGGCGCGGCATGGGCCTGCGCCGC
>chr3B_346
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-------------------------AAAAACACCAC-AAAAACTGCACAGAGAACAGCATAATTCACACTGTTAC--AAA
AAATTACCGCCTTGTTGAAAGATTCTAGAT--AGAGTTGGCGTTCGTAAGCAGAGACATGAGGAGGCAGCCAGAGTCAAT
TTCAGCAGCAGTAGCGATGGCAACAGCAAG--------ACGGTCCCCGTGATATACCTCCGTAGTTGTCGCCGTCAGACT
GTCAGAGAGCCCACGGTACCGCCGCGACTCCACCCACGGT-A-TGCCCAACGGCCTGCCGCCGCTGGCCCGCCGCGCCCA
CCATCAATCAATCAGAACAAAACACGTATTC-CAGTAGGAGCACGATCAAGCG---------------------------
-----------GCGACAAGAACATTCCTCTACAAAAAGTGACAAAGCTGCAATCCTGTGTGCTGAAGCACCAAGTATCCC
TTCGTTCCAGCAGACTCCAAGAGCCATTCCAGGCCATGGCGCCTCTGCGGAGCTCCTCGATTAGTCAATCG-TGCCTATT
-TTTATCTGTACATGT--AGCCTGCAGGCACCTCTATAAAATCTCATCGCCCTTGCTGCCCACTCACACTGAAGATCTCC
CCGAGCGATCCTCGCATTCAGCTTGTCA--CTCTGTCTTTCTTGTAGCTCGGCTCAGTTGT-CTGTTCCCTGCAAGCCGC
GACCGATCCATGTCGAGCCTGATAGATATTTGG-CGGTGGAGGTGGACAGGATCCGGGCCATGTGGAGAACGGGGGAGTC
GTTCAGACCGACGGCTTTGCCCGGCCGCGCAGGCGCACAAGAAGGCGGCCACGTAGCTCAGCCGTCCG------GCGACG
GAAATGGAACGCCAACACCTGATGGTGCCATGGCTTGGCCGGCCAAGGATCAGGCT------GCTGGCGCTGGCTCGCCG
TCGTCGCCGGTGTTCGTCCGGGAGGACGCCTTCTTGTCCATCCTGGTTGATTGTTTCGGCCAGTAGATTGCACCG----A
ACGCT-----ACGCAGTAACACGCTCCTAAGCTCTAGCTAGATGCAATGCAATTAAAGTTTCTTTCGTGATTGCTGTAGC
CTGCTGAATTATCAAATTCGGCGCCTTCTGAATGTCTCTGTTACAATACAAATCAACGCCTA-----TCTCCAGTCAGGT
CAGTTTTCATGATGGTCCCTAGAC--------------------------------------------------------
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>chr5B_347
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--------------------------AAAACACCACAAAAAACTGCACAGAGGACAGCATAATTCACACAGTTACAA--A
AAATTACCGCCTTGTAGAAATATTCTAGAC--AGAGTTGGCGTTCGTAAGCAGAGACATGAGGAGGCAGCCAGAGTCAAT
TTCAGCAGCAGGAGCGATGGCAACAGCAGAAGTGCAGAACGGTCCCCTTGATATACCTCCGTAGTTGTCGCCGTCAGACT
ATCAGAGAGCCCACGGTACCGCCGCGACTCCACCCACGGT-A-TGCCCAACGGCCTGCCGCCGCTGGCCCGCTGCGCCTA
CCA--------TCAGAAAAAAACACGTACTGTCATTCGGAGCACGATCAAGCGGCGACCTCCTCCCGCTCCCGTGGGCGC
GCGCTTCCAGATCGACAAGAACATTCCTCTAAAAAAAGTAGCAAAGCTTCAATCCTGTGTGCTGAAGCACCAAGTATCCC
CTGATTCCAACAGACTCCAAGAGCCATTCCAGGCCATGGCGCCTCTGTATGTACTCC----------------------T
ATTTATCTGCACATGC--AGCCTGCAGGCACCTCTATAAAATCGCATCGCCCTTGCTGCCCACTCACACTGAAGATCTCC
CTGATCGATCCTCGCATTCAGCTCGTCGCTCTCTGTCTCTCTTGCAGCTCGGCTCAGTTGTTCTGTTCCCTGCGAGCCGC
GACCGATCCATGTCGAGCCTGATAGATATTTGGACGGTGGAGGTGGACAGGATTCGGGCCACGAGGAGAGCGGGGGAGCC
GTTCAGACCCACGGCTTCGCCC---------GGCGCACAAGAAGGCGGCCACGTAGCTCAGCCGTCCG------GCGACG
GAAATGGAACGCCAACAGCTGATGGTGTCATGGCTTGGCCGGCCAGGGATCAGGCTGCCGGCGCTGGCGCTGGCTCGCCG
TCGTCGCCGGTGCTCGTCCGGGAGGACGCCTTCTTGTCCATCCTGGTCGATTGCTTCGGTCAGTAGATTGCACCG----A
ACGCT-----ATGCAGCAACACGTTCCTAAGCTCTAGCTAGGTGCAATGCAACTAAAGTGTCTTTCGCGATTGCTGTAGC
CTGCTGAATTATCAAGTTCGGCGCCTTCTGAATGTCTCTGTTACAATACAAATCAACGCCTATCTCTTCTCCAGTCAAGT
CCGTTTTCATGATGGTCCCTAGAGGGAAAAAAAGTTCATTTTCATGGGCAT--GTACGATCGATGGAGACGGTGCGGCCA
AGTGGGAGGGGAGCTATAATTCATTACCACCACTCGGGCGGCTAAAGTAGTAGCGAAATATCTCTCTTCACTGAGATATT
TTTGCTTCTTATACGTT------------------TTTGGAACGGACGGGAAACTCAAGCTTGACATAAAGAAATATCTC
ACTTCGCTGAGATATTTTGCTTCAATTCTTACCAGAAACTCAGACATGAAGTACAGAAGATGCATCGTGTGTTAGCCAGT
GC-AACGTTTTCTCTGAAGTCTGAACTTCACCTGCCCATGCATACTGAAAGTTTTCTCTGAACCTCAACGTTCCCGCTGC
TGCTGCACCTCACAAAACGTTCCGATCTCTGGCGCGCCCCGCCATCGGC------GGCATAAACCTTGCTCAGATTCTTC
GATTCCCCGGATCAAATACTACGTCCGGGTGGTGCAG--------CGAACCTGGACTGCACAACCATGCGAGCACGGGGC
GCGGTGAGCACGTACGTGAGGGCGACGGTCCGCATCGCCGGCCGCTGCACTTGCACCCGCCCCCGGG-CAGTCAGTGGTC
ACCGCGCGCGCGCAGCATCCTGGCAGCGGCATCTCTCTCCGGATCCGCCCGCGCGCGGAATCAATCGTACGCGCGAGGAT
A-----TCCCCTCTCCACCGCGCGCGCGACGGCAGCCTCACGTTCATTAGCTTGGCCTCCGATCGCGCGTCGCGCCGCGC
CGTGCGTCACATGGCAAATGCACGGCACGGCATGGGCCTGCGCCGC
>chr5A_351
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------------------------------CACCAC-AAAAACTGCACAGAGAACAGCATAATTCACACAGTTACAAG--
AAATTACCGCCTTGTAGAAAGATTCTAGACAGAGAGTTGGCGTTCGTAAGCAGCG----------------AGAGTCAAT
TTCAGCAGCAGGAGCGATGGCAACAGCAGAA--------CGGTCCCCCCGATATACTTCCGTAGTTGTCGCAGTCAGAT-
-------AGCCCACGGTACCGCCGCGACTCCACCCACGGT-AATGCCCAACGGCCTGCCCCCGCTGGCCCGCTGCGCCCA
CCATCAATCAATCAGAAACAAACACGTATTCTC---------------AAGCGGCGACCTCCTCCCGCTCCCGTGGGCGC
GCGCTTCCAGAGCGACAAGAACATTCCTCTAAAAAAAGTGACAAAGCTGCGATCCTGTGTGCTGAAGCACCAAGTATCCC
CTGGTTCCAGCAGACTCCAAGAGCCATTCCAGGCCATGGCGCCTCCGCAGAGCTCCTCGATTGGTCCATCGTTGCCTATT
-TTTATCAGCACATGC--AG----------CCTCTATAAAATCGCATCGCTCTTGCTGCCCACTCGCACTGAAGATCTCC
CCGATCGATCCTCGCATTCAGCTTGTCACTCTCTGTCTCTCTTGTAGCTCGGCTCAGTTGT-CTGTTCCCTGCAAGCCGC
GGCCGACCCATGTCGAGCCTGATAGATATTTGGACGGTGGAGGTGGACAGGATCCGGGCCATGAGGAGAACGGGGGGGCC
GTTCAGACCCACGGCTTCTCCC---------GGCGCACAAGAAGCCGGCCACGTAGCTCGGCCGTCCGGGTCCGGCGACG
GAAATGGAACGCCAACACCTGATGGTGCCACGGCTTGGCCGGCCAGGGATCAGGCTGCCGGCGCTGGC------TCGCCG
TCGTCGCCGGTGCTCGTCCGGGAGGACGCCTTCTTGTCCATCCTGGTCGATTGCTTCGGTCAGTAGATTGCACCG----A
GCGCTTGAACATGTAGCAACACGTTCCTGAGCTCTAGCTAGATGCGGTGCAACTAAAGTGTCTTTCGTGATTGCTGTAGC
CTGCTGAATTATCAAGTTCGGCGCCTTCTGAATGTCTCTGTTACAGTACAA----------ATCTCTTCTCCAGTCAGGT
CCGTTTTCATGATGGTCCCTGGATGGGAAAAAAGTTCGTTTTCGTGGGTACGAGTACGATCGATCGAGACGGTGCAGCCA
AGTGGGAGGGGAGATGTAATTCATTACCACCACTCGGGCGGCTGAAGTAGTAGCGA------------------------
------------------------------------------------------------------------AATATCTC
TCTTCGCCGAGATATTTTGCTTCAAAATTGTTG-----------------------------------------------
-----------------------------------CCATGCATACTGAACGTTTTCTCTGAACCTCAACGTTCCAGTTGC
TCCTGCACCTCGCAAAACGTT-CGACCTCTGGCGCGGCCCGCGATCCGGA------GCATAAACCTTGCTCAGATTCTTC
GATTCCCCGGATCAAATGCTACGTCCGGGTGGTGCGG--------CGAACCTGGATGGCAGAACCATGCGGGCACGGGGC
GCGGTGAGCACGTACGTGAGGGCGATGGTCCGCGTCGCCGGCCGCTGCACTTGCACCCGCCCCAGGG-CAGTCAATAGTC
AC--CGCGCGCGCAGCATCCTGGCAGCGGCATCTCTCCCCGGATCCGCCCGCGCGCCGAATCAATGGTACGCGCGAGGAT
ATCCCCTCCCCTCTCCACCGCGCGCGCGACGGCAGCCTCACGTTCATTAGCTTGGCCTCCGATCGCGCGTCGCGCCGCGC
CGTGCGTCACATGGCAAATGCACGGCACGGCATGGGCCTGCGCC--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-------S-----------------------------------------------
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-----------------------SS---------------S----------S---S----------S-------------
----------------S----------S--S-------------S-----------------------------------
-----------------------------------------S-----------------------------------S--
----S-------S---------------------------------------------S-S-----------------S-
---------------SSS----S------------------SS--------------------S----------------
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-------------------------------------------------------------------------S------
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-------------------------------------------------------------------S------------
S--------------------------------------------------------------------------SSSS-
-----------------------------------------------S------S-------------------------
-----------------------S--------------------------------------------------------
----------------------------------------------S-------------------S---------S---
----------SSSSSSS-----------------------------------------------------S---------
--------------S--SSSSSSSSSSSSSSSSSS-------------S---------S---------------------
SS---S----------------------------------S------------------S--------------------
--S------------S-S--------------------------------------------------------------
-------------------------------------S-----SS----SSSSSS-------------S-----------
---S-----------------------S---------SSSSSSSS-----------------------------------
-------------------------------------------------------------------S---S--------
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-----------------------------------------------------------------------S--------
--------------------------S-------------------
>forward_76
--------------------------------------------------------TGGATGACACGTGGCATTCA----
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>reverse_1858
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-----------------TGTCTGAACTTCACCTGCCC-------------------------------------------
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