>input_sequence_86305
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-------------------------------------------------------------------ATGAGAAGGAAGG
CCATGTTCACGGTGGGAAAGAGCAAGGGGGTGGTGGCATCGCTGATGCACAGGAGGCCCTTCCAGCACATGGTGCTGAGG
AGGCTCAGGGAGCTCAAGAAGATAGTCCCCGATGCCCGGGACGCGGACGTCGACGTGCTGCTCCGGCAGACCGCCGAGTA
CATCTGCATCCTGGAGCTCAAGGTGGCCGCCCTGCGGAGGCTCTCCGCCATCTACGGTGCGTGA----------------
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>chr5B_1_TraesCS5B01G219300
AAACCGAGGAATATAACTTTTACCCTTCTCCAATCCTGATAAGCATAGGAGGACTATAGGAGTGCAGTATCTGGCACTCG
GCCACAGTGATAGATAGATTGTCGTCAATCTGCAGTTTCATTTAATTTCCACGACGCAAGCTGGCAAAGACCACATGCAT
GGGCATTTCTTGTGATCATTGCAAATAATGCTAGCCGTTCGATGATTGTGATTAGGACAAGAGCGCTTGTTT--------
-------------CGAGCAAGACCGACATCGGAAGACATCTGCGCCGTGCAGTGCTTTGCTGGTTTGTTTATATATGGCA
GCCTTATTATAGGGGTCATGGCGATCGGTAGACTGTATACATACAGGGG-CATAATGCTGCCATGGCAAGGAAGAAACAA
ATGCACGGTGGGTGCGTGCATGGATGGAACATTAAAAACGAACAAGATAATCCTGTCAGTTCACTCTCACAAATTGGTGT
CTAA--ATAAATAAACCGTTAAAAAGGAAAACTAGAGAATGCACTTGCACAATTATTTAAGGGAA---------------
-------------------TTGCTAACTAAAATCACATGGGAAAGAAGGCCTAAGCTAATTATATTAGGTACGGAACATA
TAATATTTTGACATTGATATGTACACCGGACCAGACCA----GACCAGATAGTTCTTCCTGAACTCTTTTTTATGTA-TA
TAATATAATATACGTGGAGCTGAGACAATCGTTAGATG---ATCAGCTGAGCGGAAGTTGGGCAAAACCCAAGATCACCG
----AGCAGCCTAGCTTTCAACCAAACCACTGCAAGTTGCAAACGCCAAACAGGGAGACACCATTCTATATAATGACCGC
CGGACAGTTCATGGCCTGTGGGAGCTAGCTATCGTTACAGCTCAGTCTACAG----------------------------
--GTGAAACATCCCTTGCTTCTCCCCTATATATACGCCCCCC-TGCTGTGTCCCTCAGCACACACCCTCCACACAGCACA
AGTCAGTCAGTAGTGACACAGCAACCTGGGGAGGGAGAAAGGGA------GAGACACAGAGAGAGAGATGAGAAGGAAGG
CCATGTTCACGGTGGGAAAGAGCAAGGGGGTGGTGGCATCGCTGATGCACAGGAGGCCCTTCCAGCACATGGTGCTGAGG
AGGCTCAGGGAGCTCAAGAAGATAGTCCCCGATGCCCGGGACGCGGACGTCGACGTGCTGCTCCGGCAGACCGCCGAGTA
CATCTGCATCCTGGAGCTCAAGGTGGCCGCCCTGCGGAGGCTCTCCGCCATCTACGGTGCGTGACGGATGCCGCACCTCC
GTCTCAGTACGGCCCGCCCACCGCAATGCCCATGGTTAGAGGTTTTGAGCCCCAGAGTGGATGCAATTGTACATTAGTTG
GGTAGGAAGAGCATTTCTTGCCTGCTCATCTCTTGCACCCCCCAGAAGTACTACGTTTGTGAGC----------------
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-------------------------------------TGGCTCCTATGTGCGGTCACATATAGGATCTTGTTTAGCAAGA
CAAGCCGGTCATTGTTACTGACAAGGCAATGACTGGTGTTGGCTACAAGAACAATTATCTAAGCCCCTCCCTGCATCTTA
TCGAATATATAGTTGTTTCTATTCAGCTTTCCTTTTCAACTGTTTCCTGGATGACTACAACTAATGCACAACAAGAAATC
CACTGTTTAGATAAAGTAATTAATAT--TATATTTTTATCACATTATGATTTATTTACTTATTTGGCAACGGTACAGAAT
GTAGTTATTATCCTCAGAGTGAAGAACAGAGATGTAGTGTTCAACACCATAGCTCCGAGACACTGTAAT---CACAATAA
AATCCCGGTCTGTAACTTATTTGGGGCTCCAGCACAAACTCACAGTGTTGGCAGATTCTTCAACATAATGTGTTGATCTA
TCTTGGATAACACATAACAGATGCCGTGC--AAAATAAAAATGTAAGAAAAATCTTACATAAAGATCTGTCAGAATTTCC
GTAAAAAGTGAACAGAACTTATTTTAGTCAAGGTCCATTGCTTCAAGTACAACTGTGGGATTCCTTTCTAACCATGTAAG
ATATAGGCGGATGCGTCACATCAA-CATATGCTCCAGTGATTA-TGACAGAAAAGTAAAGTTCAGGGCAGATCTTACCTT
-AGTACAGTCCCATTTGTGAAGCATCCAAGAATCAATGTTCGTCAATATTTCTCAGGGTTTTCAGCTATCAGCAAGGAAA
TAAGTCCTGACTGGTCTCTCTCCAGATCATCATTAACCGACATGCCCACTTGCTACTTTGAAGTCTAACTCCTCATGTGA
ACCCCTA
>chr5D_1
AAACG-AGGAATATAACCTTTACCCTTCTCCAATCATGATAGGCAT---AGGACTATACGAGTGCAGTATCTGGCACACG
GCCACAGTGATGGATAGATTGCCGTCAGTCCGCAGATCAATTTAATTTGCACGATGCAAGCTGGCGAAGACCACATGCAC
GGACATTTCCTCTGATCATTGCAAATAATGCTGGCCGTTCGATGATTGTGATTAGGACAAGAGCGCTTGTTTGGAGCTTA
GCAG---CGCAGGCGAGCAAGAACGACATCGGAAGACATCTGCGCAGTGCAG----------------------------
-------------------------------ACTGTACGCATACAGGGGGCATAATGCTGCCATGGCAAGGAAGAAACAA
ATGCACGGTGGGTGCGCGC----ATGGAACATTAAAAAAGAACAAGATAATCCTGTCAGTTCACTCTCACAAATTGGTGT
CTAA--AATAATAAACCGTTAAAAAGGCAAACTAGAGAATGCACTTGCACAATTATTTGAGGGGAGTTTGCTTTATTTTT
TTAGAGTATTTAAGGGAGTTTGCTAACTAAAATCACATGGGAAAGAAGGCCAAAGCTAATTATATTAGGTAC-------A
TATAATATTGATATTGATATGTACACCGAACCGGACCA----GACCAGATAGTCCCTCCTGAACTCCTTTTTATGTAT--
-------ATATACGTGGAGCTGAGACAATCATTAGATGGTGATCAGTTGAGCTGAAG-TGGGCAAAACCCAAGATCACCG
GTCGAGCAGCCTAGCTTTCAACCAAACCACTGCAAGTTGCAAACGCCAAACAGCGAGACACCATCCTATACAATGACCGC
CGGACAATTCATGGCCTGTGGGAGCTAGCTATCGTTACAGCTCAGTCTACAGGTTAGAACCTAGTCCTCCCCACATGGCC
AAGTGAAACATCCCTTGCCTCGCCCCTATATATACGCCCCCC-TGCTGTGTCCCTCAACACACACCCTCCACACAGCACA
AGTCAGTCAGTAGTGACACAGCAACCTGGGGAGGGAGAAAGGGAGAGAGGGAGAGACAGAGAGAGGGATGAGAAGGAAGG
CCATGTTCACGGTGGGAAAGAGCAAGGGGGTGGTGGCATCGCTGATGCACAGGAGGCCCTTCCAGCACATGGTGCTGAGG
AGGCTCAGGGAGCTCAAGAAGATAGTCCCCGATGCCCGGGACGCCGACGTCGACGTGCTGCTCAGGCAGACCGCCGAGTA
CATCTGCATCCTGGAGCTGAAGGTGGCCGCCCTGCGGAGGCTCTCCGCCATCTACGGCGCGTGACGGATGCCGCACCTCC
GTCTCGGTACGGCCCGCCCACCGCAGTGCCCATGGTTAGAGGTTTTGAGCCCCAGAGTGGATGCAATTGTACATTAGTTG
GGTAGGAAGAGCATTTCTTGCCTGCTCATCTCTTGTACCCCCACT-AGTACTACGTTTGTGAGC----------------
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-------------------------------------TGGCTCCTATGTGCGGTCACATATAGGATCTTGTTTAGCAAGA
CAAGCCGGTCATTGTTACTGACAAGGCAATGACTGGTGTTGGCTACAAGAACAATTATCTAAGCCCCTCCCTGCATCTTA
TCGAATATATAGTTGTTTCTATTCAGTTTTCCTTTTCAACTGTTTCCTGGATGACTACAACTAATGCACAACAAGAAATC
CACTGTTTAGATAAAGTAATTAATAT--TATATTTTTATCACATTATGATTTATTTACTTATTTGGCAACGGTACAGAAT
GTAGTTATTATCCTCAGAGTGAAGAACAGAGATGTAGTGTTCAACACCATAGATCCGATACACTGTAATAATCACGATAA
AATCCCGGTCTGCAACTTATTTGGGGCTCCGACAGAAATTCACAGTGTTGGCAGATTCTTCAACATAATATGTTGATCTA
TCTTGGATAACAAATAACAGCTGCC--GC--AAAAAAAAAATGTAAGAAAAAT-TTACATAAAGATCTGTCAGAATTTCC
GTAAAAAGTGAATAGAACTTATTTTAGTCAAGGTCCGTTGCTTCAAGTACAACTGTGGGATTCCTTTCTAACCATGTAAG
ATATATGCGAATGCGTCACATCAAACATATGCTCCAGTCATTA-TGACAGAAAAGTAAAGTTCAGGGCAGATCTTACCTT
TAGTACAGTCCCATTTGTGAAGCATCCAAGAATCAATGCTCGTCAATATTTCTCAGGTTTCTCAGCTATCGGCAAGGAAA
TAAGTCTTGACTGGTCTCTCTCCAGATCATCACTAACCGACATGCCCACTTGCTACTTTGAAGTCTAACTCCTCATGTGA
ACCCCTA
>chr5A_1
AAACCGAGGAATATAACCCTTACCCTTCTCCAATCATGATAAGCAT---AGGACTATACGAGTGCAGTATCTGGCACACG
GCCACAGTGATAGATAGATTGCCGTCAATCTGCAGTTCAATTTAATTTGCACGACGCAAGCTGGCGAAGACCACATGCAC
GGACATTTCCTCTGATCATTGCAAATAATGCTGGCCGTTCGATGATTGTGATTAGGACAAGAGCACTTGTTTGGAGCTAG
CAGCAAACGCAGGCGAGCAAGAACGACATCGGAAGACATCTGCGCAGTGCAGTGCCTTGCTGGTTTGTTTATATATAGCC
TTG--------GGGCTCATAGCGATCGGTAGTCTGTATGCATACAGGGGGCATAATGCTGCCATGGCAAGGAAGAAACAA
ATGCACGGTGGGTGCGCGC----ATGGAACATTAAAAAAGAACAAGATAATCCTGTCAGCTCACTCTCACAAACTGGTGT
CTAAATAATAATAAACCGCTAAAAAGGCAAACTAGAGAATGCACTTGCACAAT---------------------------
------TATTTAAGGGAGTTTGCTAACTAAAATCACATGGGAAAGAAGGCCAAAGCTAATTATATTAGGTGC-------A
TATAATATTGATATTGATATGTACACCGGACCAGACCAGCCAGACCAGATAGTTCCTCCTGAACTCTTTTTTATGTACTA
TATAATAATATACGAGCAGCTGAGACAATCATTAGATGATCATCAGCTGAGCGGAAGTTGGGCAAAACCCAAGATCACCG
GTCGAGCAGCCTAGGTTTCAACCAAACCACCACAAGTTGCAAACGCCAAACAGCGAGGCACCATCCTATACAATGACCGC
CGGACAGTTCATGGCCTGTGGGAGCTAGCTATCCTTACAGCTCAGTCTACAGGTTAGAACCTAGTCCTCCCCACATGGCC
AAGTGAAACATCCCTTGCCTCGCCCCTATATATACGCGCCCCCTGCTGTGTCCCTCAGCACACACCCTCCACACAGCACA
AGT----CAGAAGTGACATAGCAACCTGGGGAGGGAGAAAGG------------------GAGAGAGATGAGAAGGAAGG
CCATGTTCACGGTGGGGAAGAGCAAGGGGGTGGTGGCATCGCTGATGCACAGGAGGCCCTTCCAGCACATGGTGCTGAGG
AGGCTCAGGGAGCTCAAGAAGATAGTCCCTGACGCCCGGGACGCGGACGTCGACGTGCTGCTCAGGCAGACCGCCGAGTA
CATCTGCATCCTGGAGCTCAAGGTGGCCGCCCTGCGGAGGCTCTCCGCCATCTACGGTGCGTGACGGATGCCGCATCTCT
GTCTCAGTG-----------CCGCAATGCCCATGGTTAGAGGTTTTGAGCCCCAGAGTGGATGCAATTGTACATTAGTTG
GGTAGGAAGAGCATTTCTTGCCTGCTCATCTCTTGTACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGAGCTGTGGCTCCTATGTGCGGTCACACATGGGAGCTTGTTTAGCAGCA
GAAGCCGGCCATTGTTACTGACAAGGCAATGACTGGTGTTGGCTACAAGAACAATTATCTAAGCCCCTCCCTGCATCTTA
TGGAATATATAGTTGTTTCTATTCAGCTTTCCTTTTCAACTGTTTCCTGGATGACTACAACTAATGCACAACAAGTAATG
CACTGTTTAGATAGAGTAATTAATACTATATATTTTTATCACGTTATGATTTATA----TATTTGGCAATGGTACAGGAT
CTAGTTATTATCCTCAGAGTGAAGAACAGAGATGTAGTGTTCAACACCATAGCTCCGAGACACTG---TAATCACAATAA
AATCCCGGTCTGTAACTTATTTGGGGCTCCGACACAAACGCACAGTGTTGGCAAATTCTTCAACATAGTATGTTGATCTA
TCTTGGATAACACATAACAGCTGCC--GCGCAAAGTAAAAATGTAAGAAAAAA---ACATAAAGATCTGTCAG----TCC
GTAAAAAGTGAACAGAACTTATTTTAGTCAAGGTCCCTTGCTTCAAGTACAACTGTGGGATTCCTTTCTAACCATGTAAG
ATATAGGCGAATGCGTCACATCAA-CATATGCTCCAGTGATTATTGACAGAAAAGTAAAGTTCAGGGCAGATCTTACCTT
TAGTACAGTCCCATTTGTGAAGCATCCAAGAATCAATGTTCGTCAATATTTCTCAGGTTTCTCAGCTATCAGCAAGGAAA
TAAGTCTTGAATGGTCTCTCTCCAGATCAGCACTAACCGACATGCCCACTTGCTACTTTGAAGTCTAACTCCTCATGTGA
ACCCCTA
>SNPs
-----------------S-----------------S----------SSS---------S------------------S--
---------------------S---------------SS---------S----------------S-------------S
--S------S-S--------------------S-----------------------------------------------
----------------------S----------------------S---------S--------------------S--S
SSSSSSSSSSS---S----S------------------S-----------------------------------------
----------------S--SSSS---------------S-----------------------------------------
-------SS------------------S------------------------------S----S----------------
---------------------------------------------------S--------------------SSSSSSS-
--SS--S----S-------------------------------------------S------------------------
--SS--------------------------S-------------------------------------------------
-----------------------------------------------------S----------S-----S---------
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------------------S--S----------------------------------------------------------
------------------------------------------------------S-------------------------
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---------------------------------------------------------------S----------------
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-----------------------------------S-------SSS----------------------------------
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------------------------------SS-------------------------------------S----------
--------------------S----SS--------------------------S--------------------------
------------------------------------S-------------------------------------------
---------S----------------------------------------------------------------------
---------------------------------------------------------S--S-------------------
------S-------------------------S-----------------------------------------------
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>forward_163
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---------------------------------------------------------------GCAAAGACCACATGCAT
GGG-----------------------------------------------------------------------------
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>reverse_2111
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------------------------------AGCACAAACTCACAGTGTTGG-----------------------------
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