>input_sequence_86302
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-----ATGGGGAGGAGTGTGCCCGCGGGTGCCGTCGCCGGCAGCAAGAA-GGCGTCGTGGCCGGAGGTGGTGGGCTGGCC
GGCGCACGACGCAGCGCTCCAGATCAGCAAGGACAGGCCTGACGTCTCCATCTCCTTGTACATA-GGCACGGGCCCCTGG
CCGCCGGGCCCGCACCCCTGGCGTGTCGTCGTGGTGTCAGACGCGGCGACCGGCGTCGTCGTCCAGACGCCCATCGTCGG
TTAG----------------------------------------------------------------------------
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-------------------------------------------------------
>chr5A_1_TraesCS5A01G417400
TGCAAACTAGCCTCCCTCGTATCAACGCTTGTATTGGCCAAAAGTATCAGCCGGCCAGAAACGCATGAGGAGCAAGGTGT
GTGCGTGCGACTCCTCGACGGAAAGCAACCGTCCAGACAAAGCCGTACACCCAGCCGGGACCAAAGCCAACAGTAGAGGG
TAGCGCTTGGGTCGGGCTAACATTTCATTTGGACTGATCCAGGCTAGGCAAGCCAATCCGAACTTTCTCCAGGCTGCATC
GGCACTTCTTGACTAGTGGACTGAGGAAGTTAAAGATACTTCACGATGCCACCCATTCCGAAGCTGTGCTTGGGTGCACC
TCAATCGCATCAACATCAACCCAGTGATTATTTCTTCATACGCTTACTGAACGAAAAAAC-CTACTTAAGAGGTGCGGGG
CTAGGATCGGTTGAGAATTGCAGGTCACGAAAATTGTTTCCCCACATAT-TATGTTCCTGTGTGTCATCTATTTGTAAGC
ACAGAGCTGCGAAGATGATATATATGGCTTGTGCTCATGGACTCTGTGAGGGTAGTAGTAAAGTGCGTACGGCGAAGTTA
TTTCCAGTCTCTCGCTGCGACGTTGGTACCTCAAAGTGCGTACGGCTGCAATTGTGAATGATGATAGGTGGGTTGGGTAA
TACGTAGTAGAAGAGACACCAGTCT---GAACACGTGCTTGGCTATCCTCGATGT--------------GCTCGGTAGTC
TGCAC-GAGTCATCAAGTTTCTTCCTGCTTTTCCTAGAAAGAAAGGAGAATGAGAAGGGCTGCCATGCTCTCCTCTCCTA
GT---AACCGA-CGCTGGCCATCAGCCAACAAAGGACGGCGGTGTC------CGCCATGCAACCCATAATCCTTATCTTT
TATT---GATGATGACATGATGCAACCCGTCATCTTACCACCTCTTTCTGTGGAAGAAATTTGCGT------CTATAAAG
TAGCATCAAATGTGGCTTACTAG---GT---ACTTCCATATTCATCAGCCACAAGCCGATGAAAGTTTCAGTAGCACCGG
GCAATATGGGGAGGAGTGTGCCCGCGGGTGCCGTCGCCGGCAGCAAGAA-GGCGTCGTGGCCGGAGGTGGTGGGCTGGCC
GGCGCACGACGCAGCGCTCCAGATCAGCAAGGACAGGCCTGACGTCTCCATCTCCTTGTACATA-GGCACGGGCCCCTGG
CCGCCGGGCCCGCACCCCTGGCGTGTCGTCGTGGTGTCAGACGCGGCGACCGGCGTCGTCGTCCAGACGCCCATCGTCGG
TTAGGCCGCATGCACCCCTTGACCCTTGTGCCTGCACACGGATACGTAC-------AGTAGTATCATATTTGCGTTGCTG
CAGTTGCACAGCATATGAATAAAATCCAACATTTCAAAGCATGTTTCAATTTGAGGCAGGGTCTTGTGGGATAAATGAAT
AAAATCCAACATTTGAAAGCAGGTTTCAATACGTGGATGATACAGCAGTATGTTTTCCATAATTTTCTTCTCTAGCAATC
TAGCATCACTGCATCATGTTCAGGTCTAGCAAGAAGAAAAGCGTCTAGCATAGGGTTCAGTTGTTACGTCTATAACATC-
---AGGTTCAGGCCCACTGGTTCAAGAGAGTTTAGACTAATTTATTTATTTTTCTTTTGTTTTTCTGAAATTTAGCCTAA
GTTTTTGACCGAGCATGCATATTTTTAGTTTAGTTTTTGGAATGACCGAGCATGCATGGTTTGTGGTTCGACAGTCTTTC
CCAACAAACTAACCTACTTACGAATCGAAGAGCCTAATGGAGAACGTAGTTAAACTACTGAACATCACAAGGGCTATTCA
TATAGGAAGTGAGACAGTGAGTAGTAGTTTAGTCCAATTAAATTACTCCCTCAGTTTCTAAATATAGGCTCTTTTAAAGA
TTTCAATGCCGACTACATAGAAAAATGTATAGTCATATTTTAGAGCATATATTTACATGTTTTTCTCTGTATGTACTACA
TATGGGAATTTTTAAAAGGTCTTATATTCAGAAACGGAGGAAATAGTACTCACTCCCTATATGAACCATTAAACTACTGA
ACAACTAACCTACTTAAGGCATTTCTAACCAATCCCTTATAACTGGTTAGAGGAGCCAAAATACGGTTTTACTCCTCTAA
CCGGGACCTGGCCGATCCCTTATCCGCTGTAAGGGTGTAAAAATTTACCCCGGCCCCAACCGTTTCCTTAAATATACTCC
ATCAAAACGGGTCGAAGTAAAATCTCTGCTCTCTCTCTCTGCTGCTCCTGCGCGC
>chr5B_316
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------GCACC
ACAATCGCATCAACATCAACCCAGTGCTC-TTTCTTCATATGCTTACCGAACAAAAAAAATCTACTTATGAGGTGAGGGG
CTAGGATCGGTTGAGGATTGCAGGTCACGAAAATTGTTTCCCCACATATATATGTTCACGTGTGTCAACTATTTGTAAGC
ACAGAGCTGCAAAGATGATATATATGGCTAGTGGTCAGGGAC--------------------------------------
--TCCAGTCTCTCGCCGCAACGTTGGTACCTCAAAGTGCGTACGGCTGCAATTGTGAGTGATGATGGGTGGGTTGGGTAA
TACGTAGTAGAAGAGACACTAGTCT---GAACACGTGCTTGGCTATCCTCGATGT--------------GCTCGGTAGTC
TGCAC-GAGTCATCAAGTTTCTTCCTGCTTTTCCTAGAAAGA--GGAGAATGAGAAGGGCTG-CATGCTCTCCTCTCCTA
GT---AACCGA-CGCTGGCCATGAGCCAACAAAGGACGGCGGTGTC------CGTGATGCAACCCATCATCCTTATATTT
TATTGATGATGATGACATGATGCAACCCGTCATCTTACTACCTCTTT-TGTGGAAGTAATTTACGT------CTATAAAG
TACCATCAAATGTGGCTTACTGG---GT---ACTTGCATATTCATCAGCCACAAATCGAGGGAAGTTC-AGTACCACCGG
GCAATATGGGAAGGAGTGTGCCCGCGGGTGCCGGCACCGGCAGCACGAA-GGCGTCGTGGCCGGAGGTGGTGGGCTGGTC
GGCGCACGACGCAGCGCTCCAGATCAGCAAGGACAGGCCTGACGTCTCCATCTCTTTCTACATA-GGCACGGGACGCTGG
CCGCCGAACCCGGACCTCTCGCGTGTCATCGTGGTGTCAGACGCGGCGACCGGCGTCGTCGTCCAGACGCCCGTCGTCGG
TTAGGCCGCATGCACCA-------CTTGTGCCTGCACACAAATACGTAC-------AGTAGTATCGTATTTGCACTGCTG
CAGTTGCACAGCACATGAATAAGATCCAGCATTTGAAAGCATGTTCCTATTTGAGGCAGCGGGGTGCAT-----ATGAAT
AAAATCCAACATTTGAAAGCAGGTTTCATTACGTGGATGATAGAGTACTATGATTTTCATATTTGTCTTCTC--------
C----TTACTGCATTATCATACATGTAGCATA---------------------GGTTCAGTGGTTGCATCTCTAACATCG
ATCAGGTTCAGGCCCATGTGTTGAAGAGAATTTAGATTGATTTCTTTTCCTAGACTAATTTTA-----------------
---------------------------------------GAATGACCGAGCATGCATGGTTTGTGGTTTGGCAGTCTTT-
CCAACAAACTAACCTACTTACGAATCAAAGA-------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------
>chr5A_541
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--------------------------------------------------------------GTGAGTACGGTGAAGTTA
TTTCTAGTCTCTCGCTGCCACGTTGATACCTCAAAGTACGTACGGCCGCAGTTATGAATGATGATCGGTGGGTTGGGTAA
TAGA---------AGAGACCAATCTGAAGAACACGTGCTGGGCTATTTTCGATGTACGATAGTCCACGGGCTCGCTAGTC
TGCACTGAGTCATCAAGTTTCTTCCTGCTTTTCCTAGAAAGAAAGGAGAATGAGAAAAGCTG-CATGCTCTCCTCTCCTA
GT---AACCGA-CGCTGGCCATGAGCCAATACAGGACGGCGGTGTC------CGTGATGCAACCTGGCATCCTTT-----
-----------------------AATCCATCATCTTACCACCTCTTG-TGTGGAAGTAATTTACTCCTACACCTATAAAG
TATCATCAAATGTGGCTTACTGC---AT---ACTTGCATATT-ATCAGCCACAAGTCAAGGGAAGTTTCAGTACCACAGG
GCAAAATGGGGAGAAGTGAGCCCGCGGGTGCCGTCGCCGGCCGCACGAA-GGTGTCGTGGCCGGAGGTGGTGGGCTGGAC
GGAGCGCGATGCAGCACTCCAAATCAGAAGGGACAGGCCTGACGTCTCGATCTCCTACCATACACGGCACGGCGCCTTGG
CCGCCGGGGCTGCACCCCTGGCGCGTGATCATGGTGTCAGACGCGTCGACCGGTTTCGTCGTCTAAACGCCCATAGTCTG
TTAACGTGGATGCATCCCTTGTGCGT---------GCACGGATACGTATATATAGTAGTAGTATCGTATAGCGAT-----
--GTTGCACGGCACATGAATAAAATCCAACATTT----------------------------------------------
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-------------------------------------------------------
>chr5B_645
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------GTAGAAGAGAGACCAGTCT---GAACACGTTCTTGGCTATCCTCGATGTTTCACAGTCGACGGGCACACTAGTG
TGCAC-GAGTCATCAAGTTTCTTCCTGCTTTTCCTAGAAAG----GAGAGTGAGAAAAGCTG-CGTGCTCTCCTCTCCTA
GT---AACCGA-CGCTGCCCATCAGCCAACAAAGGACGGTGGTGTC------CGTGATGCAACCCATTATCA----TTTT
AATTTAT--TGATGACATGATGCTACCCGTCATCTTACCACCACTTC-CGTGGAAGAAATTTGCGT------CTATAAAG
TACCATCAAATGTGGCTTACTAG---GT---ACTTGCATATTCATCAGCCACAAGCCGTGGAAAGTTTCAGTACCACCGG
GCAAAATGGGGAGGAGTGTGCCTGCGGGTGCCGGCGCCGGCAGCATGAA-GGCGTCGTGGCCGGAGGTAGTGGGCTGGTC
GGCGCACGACGCAGCGCTCCAGATCAGCAAGGACAGGCCTGACGTCTCCATCTCCTTCTACATA-GGCACGGGCCCTTGG
CCGCCGGGCCCGCACCCCTGGCGTGTCGTCGTGGTGTCAGACGCGGCGACCGGCGTGGTCGTCCAGACGCCCGTTGTGGG
TTAGGCCGCATGCACCC-------CTTGTGCCATCGCATGGATACGTAC-------AGTAGTATCGTATTTGCGTTGCTG
CAGTTGCACAGCACATGAATAAAATCCAACATTTGAAAGCATGTTCCTATTCGAGGCAGTGGGGTGCAT-----ATGAAT
AAAATTCAACATTTGAAAGCAGGTTTCATTACGTGGATGGTAGAGTACTATGATTTTCATATTTGTTTTCTC--------
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-------------------------------------------------------
>chr5A_759
GCTGC---------------------------------------------------------------------------
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----------------------------------------------------------------ATGATCTCCTCTCCTA
GTAATAACCGA-CGCTGGCCATCAGCCAACAAAGGACGGCGGTGTC------CGCCATACAACCGATCGTCC---TTTTC
ATTTAAT--TGATGACATGATGCAACACGTCATCTTACCACCTCTTC-TGTGGAAGTAATTTGCGT------CTATAAAG
TACCATCAAATGTGGCTTACTAGGTAGT---ACTTGCATATTCATCAGCCACAAGCCGAGGAAAGTTCCAGTACCACCCG
GCAAAATGGGGAGGGTTGAGCCCGCAGGTGCCATCGCCGGCAGCACGAA-GGCATCATGGCCGGAGGTGGTGGGCTGGCC
GGCGCACGACGCAGCGCTCCAGATCAGCAAGGACAGGCCTGACGTCTCCATCTCCTTCTACATA-AGCACGGGACGCTGG
CCGCCGAGCCCGTTCCTCTCGCGTGTCATCGTGGTGTCAGACGCGGCGACCGGCGTCGTCGTCCAGACGCCCTTCGTCGG
TTAGGCGGCATGCACCC-------CTTGTGCCTGCACACGGATACGTAC-------AGTAGTATCGTATTTGCATTGCTG
CAGTTGCACAGCACATGAATAAGATCCAACATTTGAAAGCATGTTCCAATTTGAGGCAGTGGGGTGC-------ACGAAT
AAAATCCAACATTTGAAAGCAGGTTTCATTACGTGGATGATAGA-TAATATGCTTTTCATATTTGTCTTCTCTAGCAATC
C----TCACTGCATTAT---------------------------------------------------------------
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-------------------------------------------------------
>chr5D_759
GCTGC---------------------------------------------------------------------------
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----------------------------------------------------------------ATGCTCTCCTCTCCTA
GTAATAACCGATCGCTGGCCATCAGCCAACAAAGGACGGCGGTGTC------CGCCATACAACCCATCGTCC----TTTT
CATTTAT--TGATGACATGATGCAACACGTCATCTTACCACCTCTTC-TGTGGAAGTAATTTGCGT------CTATAAAG
TACCATCAAATGTGGCTTACTAG---GT---ACTTGCATATTCATCAGCCACAAGCCGAGGAAAGTTCCAGTACCACCCG
TCAAAATGGGGAGGGTTGAGCCCGCAGGTGCCATCGCCGGCAGCACGAA-GGCATCCTGGCCGGAGGTGGTGGGCTGGCC
GGCGCACGATGCAGCGCTCCAGATCAGCAAGGACAGGCCTGACGTCTCCATCTCCTTCTACATA-GGCACGGGACGCTGG
CCGCCGAGCCCGTACCCCTCGCGTGTCGTCGTGGTGTCAGACACGGCGACCGGCGTGGTCGTCCAGACGCCCGTCGTCGG
TTAGGCCGCATGCACCC-------CTTGTGCCTGCACAGGGATACGTAC-------AGTAGTATCGTATTTGCGTTGCTG
CAGTTGCACAACATATGAATAAGATCCAACATTTGAAAGCATGTTCCAATTCGAGGCAATGGGGTGC-------ATGAAT
AAAATCCAACATTTGAAAGCAGGTTTCATTACGTGGATGATACAGTTCTATGATTTTCATATTTGTCTTCTCTAGCAATC
--------------------------------------------------------------------------------
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-------------------------------------------------------
>chr5D_759
GCTGC---------------------------------------------------------------------------
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----------------------------------------------------------------ATGCTCTCCTCTCCTA
GTAATAACCGA-CGCTGGCCATCAGCCAACAAAGGACGGCGGTGTC------CGCCATACAAACCATCGTCC----TTTT
CATTTAT--TGATGACATGATGCAACACGTCATCTTACCACCTCTTC-TGTGGAAGTAATTTGCGT------CTATAAAG
TACCATCAAATGTGGCTTACTAG---GT---ACTTGCATATTCATCAGCCACAAGCCGAGGAAAGTTCCAGTACCA----
--------------------CCCGCAGGTGCCATCGCCGGCAGCACGAA-GGCATCATGGCCGGAGGTGGTGGGCTGGCT
GGCGCACGACGCAGCGCTCCAGATCAGCAAGGACAGGCCTGACGTCTCCATCTCCTTCTACATA-AGCACGGGACGCTGG
CCGCCGAGCCCGTACCTCTCGCGTGTCATCGTGGTGTCAGACGCGGCGACCGGCGTCGTCGTCCAGACGCCCTTCGTCGG
TTAGGCCGCATGCACCC-------CTTGTGCCTGCACACGGATACGTAC-------AGTAGTATCGTATTTGCATTGCTG
CAGTTGCACAGCACATGAATAAGATCCGACATTTGAAAGCATGTTCCAATTTGAGGCAGTGGGGTGC-------ATTAAT
AAAATCCAACATTTGAAAGCAGGTTTCATTACGTGGATGATAGA-TACTATGCTTTTCATATTTGTCTTCTCTAGCAATC
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>chr5A_764
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---------------------------------------------------------------CATGATCTCCTCTCCTA
GTAATAACCGA-CGCTGGCCATCAGCCAACAAAGGACGGCGGTGTCTACCAGCGCCATACAACCTATCGTCC----TTTT
CATTTAT--TGATGACATGATGCAACACGTCATCTTACCACCTCTTC-TGTGGAAGTAATTTGCGT------CTATAAAG
TACTATCAAATGTGGCTTACTAG---GTAGTACTTGCATATTCATCAGCCACAAGCCGAGGAAAGTTCCAGTACCACCCG
GCAAAATGGGGAGGGTTGAGCCCGCAGGTGCCATCGCCGGCAGCACGAA-GGCATCATGGCCGGAGGTGGTGGGCTGGCC
GGCGCACGACGCAGCGCTCCAGATCAGCAAGGACAGGCCTGACGTCTCCATCTTCTACTACATA-GGCACGGGACGCTGG
CCGCCGAGCCCGTACCACTCGCGTGTCATCGTGGTGTCAGATGCGGCGACCGGCGTCGTCGTCCAGACACCCGTCGTCGG
TTAGGCGGCATGCACCC-------CTTGTGCCTGCACACGGATACGTAC-------AGTAGTATCGTATTTGCATTGCTG
CAGGTGCACAGCACATGAATAAGATCCAACATTTGAAAGCATGTTCCAATTTGAGGCAGTGGGGTGC-------ATGAAT
AAAATCCAACATTTGAAAGCAGGTTTCATTATGTGGATGATACAGTACTTTGATTTTCATATTTTTCTTCTCTAGCAATC
C----TCACTGCAT------------------------------------------------------------------
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>chr5D_844
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-------------------------------------------------------------------------TATTTTC
TATTCAT--TGATGACATGATGCAACCCTTCATCTCACTAGATCTTA-TGTGGAGGCAATATACTC------CTATAAAG
TATCATCAAATGTGGCTTGCGAC---CT---ACTTACATTTTCATCACCCGCAAGTCGAGGGTAGCTTCAGTACCACCGG
GCATTATGGGGAGGCGTGTGCCCGCGGGTGCCATCGCCGGCAGCACGAAAGGCGTCGTGCCCAGAGGTGATGGGCTGGCC
GACGCATGACGCAATGCTCTGGATCAGCACGGACATGCCTGACGTCTCCATCTCCTTCTACATA-GGCACGGGCCGCTGG
CCACCGGTACCGCAACGCTGGCGTGTCGTCATGGTGTCAGACGCGGTGACCAGCGTGGTCGTCCAGACGCCCGTCGTTGG
TTAGGCCGCATGCACCC-------CTTGTGCCTGCACACGGAAACATAC-------AATACTATCGTATCTGCGTTGCTG
CAGTTGCACAGCACATGAATAAAATCCAACATTTGAAAGCATGTTCCAATTCGAGGCAGTGGGGTGC-------ATGAAT
AAAATCCAACATTTGAAAGCAGGTTTCATTACGTGGATGATACAGTAGCATGATTTTCATATTTGTCTTTTCTAGCAATC
--------------------------------------------------------------------------------
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-------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
S-------------------------S-SS----------S------S----S------S--------S------S----
---------------S-----------------------------------------SS--------S------------
----------S------------------S---S---S----SSSSSSSSSSSSSSSSSSSS---S------S-------
------------------S----------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
-------------------------------------------------------------------S--------S---
-----------------------------------------------S--------------------------------
--S--------------------------------S-----------------------S-------------S------
---------------------------------------------S----------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
---------------------SS------------------------------------------S--------------
----------------------------------S----------S-------------S-SSS--SSSSSSSS------
----------------------------S----------------S------S---S----S------------------
SSSSS---------S--SS-SSSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSS--------S---S-S---S--------
----------------SSS---S------S------S-S----S---SSS-SSSS-SSS---SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------S-S--------S
--------------------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_131
--------------------------------------------------------------------------------
-------------------------------TCCAGACAAAGCCGTACACC-----------------------------
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-------------------------------------------------------
>reverse_1718
--------------------------------------------------------------------------------
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-------------------------------------TGGAATGACCGAGCATGCAT-----------------------
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-------------------------------------------------------
