>input_sequence_86292
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-----------------------------------------------ATGTGGATGAGGAAGAAGAA------GGCGGCG
ACGACGAGGCCGGCGGCCAGGAGGAGGGCGCCGACGTCTCTAGGGGCGCTGTGGCGGCGCGTGGTCGGGCCGGCCCGCGG
CGGCAAGACCAAAAAGACCAAGACCAAGAAGAGCAAGATCGGGTCGCTCTCGCGCGCGTTCCGGGCGTTCTCCTGCGTCC
GCGGCCATGGCAAAGGGAGGATGGCTGCCCGCGCAGCGCGCAGGTACTGA------------------------------
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>chr4B_1_TraesCS4B01G096800
GATGCGACATGGACGACGCTGGAGTGCGGCTTAAATAGTCGCGGCCAGGCCATGCGAAGGGCCGGTCAGCTGCTTCAATG
TGGCGCAGCGGCCGGAGTTGGTTCCTCAGGAACCTACGTCCGCTTTTAAGCGGCGACTGCCGTGAGGTCAGATCGGTCAA
CGCCGTCTTCCATCCCTCCCCGGTCACATCACGGCATCAATACAGGCCTCCGCGTGCTCTGGGCTG-CATGAATGCGGCG
TGGTAAGTAGCGCGTGCATTAGAAGAAATGCACGAG-GGGGCGGATGACTGATTTTTTGTGGGCCAGAGCAGTGCAGTCA
GAAACGGCCTGGACTCTCAGAAACCTTCCTATA------TTTGTCTATAATTTGCGGAAGAAATAACGTCTGGATCGTTT
CGCGAACTGATGCAGAACCGTGTTGGATGACTTTTGCAATCCTAACATATGGTCCAAACAATTGCGGTTGTGGAAGATTT
GCAGATCCGCCTTGAAGATGCCCTTAGACACGTAAAGTTGCGGACGTGGACTACAAAAGTATGGCCGACCAAGTGTCCCA
TTGTTTGTTTGTCGGTCTACTATCCATGAACGTGGCATGGACACCTAGCCGCCCAAAGCGCATACGCATGTCGGCATCCA
CGTAAACCAACACCCGTGGTTTACGTGGCACACGGTCGACAACACGTACGCATCTCCTCGCAGATCAATCATGACAGA--
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---------------------------------------------------------------------------TACCG
TCAACCATCCAAGAAGCCCACGCCC--GTGCATCGTTCCCCAAGATGCTCTAGCCGCTCAGTGGGCACGTAGCAGCAAGT
CGGCTGCGCTCGCATGCCGACAAGCCGTCCCATCCGGACGCCACGTACGTGATGTGGCGCGACGCACCCACCGTCCCAGA
GTGGTATAAGATGGCCACCATGCGCTAAAGTTAGCAGCACACGACACCATCTACACACCATCTCTCCATCTGCTTGTTCT
CATCGCCTCAAGAAGCTTTGCGTTGTATACGTTCGACCGGCCGTAGGATGTGGATGAGGAAGAAGAA------GGCGGCG
ACGACGAGGCCGGCGGCCAGGAGGAGGGCGCCGACGTCTCTAGGGGCGCTGTGGCGGCGCGTGGTCGGGCCGGCCCGCGG
CGGCAAGACCAAAAAGACCAAGACCAAGAAGAGCAAGATCGGGTCGCTCTCGCGCGCGTTCCGGGCGTTCTCCTGCGTCC
GCGGCCATGGCAAAGGGAGGATGGCTGCCCGCGCAGCGCGCAGGTACTGATCGGTCTGGGACGCGCACGGCCGCCGTCCG
GGAGTCGAGAGCTGCCCATCACAAATTTCATGTTAACTTTGGATATCCTGTACCCACGTGTTTTTTCCTGCGGGGACTGT
ATCCACGTGTTGTGCTTGTACTGCGTGCTGTTTGTAAAAACATACCTCCATTCCATAACGTAAGACGTTTTTTGACACTA
CACTAGAGTCAAAAAAATGTCTTACGGGCGGAGAAAGTACTGGTCCTCGAAAGAGGAAGTTAAGTGCGTTTCGTAATCTC
ATTAGAAATAATTCTTTCAAAAACTCAAGACACATACTCACAGTAAGCACGCAGCCACGCATGCTCATTTCATCACTATA
AACATGGCGGGTGCTAGCCGCCGGTGGACCGGCCCAAATTTGGGCCGGCAGCCGCGCAGCACCGTTGGATTTTGGCCCTC
CCCGCGTCGTGTTCTTCGCTCGCGAGAAAAAAAGAGGACCCGCATGCTCCCACGGGCACAACACTCCCCATATCTGCTGT
TGTGGCCGTGCCCGAGCTAACTTTTTCAAAATAAAGCATTTGTTTTATTAATTTTCAGAAATATTATGCCGAAATATATT
TTTTCAAAAATAATATTCAGTTGATCAAGAATAGGCTGATTAGTACCCAATCGGCTAACAGCAGGCCGATTGGGCTAATT
GGCTTAAAGTAGGACGATAAGGGCTGATGGGCTTAAAGTAGGGCTAATTGGCTTAAAGTAACCCGCAAATTTTTTTTGGC
TTAAAGTAGGATGATTAGTTCTAATTGGCTTGCTTTAAGCTGTTAGGTGCATGTCTCATCTTCTCATGCCTAAGTTTCAT
GCTTCTGGCCACCGAGATGGGTAAGCATTATAGTGTAGTCTCATACTCTTGCTAAGATATGTCCTGGCACTGAGATGGGT
AAGCATTATAGTGTAGTCTCGTCCTCTTGCTAAGATATATTTAAATCCTCAGCAGAGGAAACATACAGCTTAAAAGGATA
TAAGGATTTG
>chr4D_10
---------TGGACGGCGCCGGAGCACGGCTTAAATAGCCGCGGCCAGGCCATGCGAAGGGCCGATTAGCCGCTTAAATG
CGGCACAGCGTCCAAAGTTGGTTCCTCGGGAATCTGCGTCCGCATTGAAGCAACGATTGTCGAGAGGTCGTGTCGGTCAG
CGCTGTCCTCCTTTCCTGCCTGGTCACATCGCAACATCAATGCCGACCTCTGGGTGCTCTGGGCTGGCATGAATGCAGCT
CGGTAAGCGGTGCGTGCATCGGAAGGAAAGCGCAGGAGGGGCGGGTGACGGGTTTTTGATGGGCCAGAGCAGGCCAGAAA
CGTGTGTGGTCGGTCCTGACTCCCGCAAATCTCCTCACGTTTGTCTTTGATTTGTGGGAGAAATCACGTCCGGACCGCTT
CGTGGACTGATATAAAGCCGCGTTGGATGATTTTCACGATCTAGACAGTACGGTCAT-------------TGAAAGGTTT
GCGGATCCGCGTTGAAGATA---------ACGTACAGTTGCGGACGCGGACCATAAAAGTATGGCCGACCAAGTGTCCCA
TTGTTTGTTTGTCGATCTACTATCCATGAAGGTGGCATGGACACCTAACCGCGCAAA--GCATACGCATGTCGGCATCCA
CCTAAACCAACACCCGTGG---------CACACGGTCGACAACACGTACACATCTCCTCGCAGATCAATCAGGACAGGGG
AAAATATCCAGTGCTATCATCTGATAGGTGATACGGTGATACAAGACTATATGGAGCGTTAGATATAGAGGAACGGACTG
GATCAGTTCACTCAGCTGTTTACATATGCCCCCAGTAACATTTGCATCTTGGCCCCCAAAACAAGTATGTGTTGGTCAAA
ACTCCTGTCACATGTTTCTCCTTCAAGTCCTCGTTTCTCAGGAAACATGCCGTTTAAGAATGCAATCAGCAACCCCGGGT
CAGAATGATTATCAGAACATATACAGATAACCAGTGAAATCAAATATAGGCACTTTCAGCACATATTCCTACAAGCAAGC
AGCACTCCTTATTTTTTCCAAAGTTCCAAAACAATAGAACAAACATCCCTTTGCCACATTCTACAGTTTCTTCTATTACA
AAGTGAAGCAAAACAAATTGTGCTGGCTCCAGATATAAGCAACAAAACATGGCAGAATAAAAGATTCCACAATACTAGTA
ACACCTTCAGATATAAAAGCATGTTGTTGTGCAATGAAGCAAACCAGAGCGGTACAATCTACCAGATTGACAAAGCACAA
TGCATTGCTTGCCAAGAAATTGCACATATATGTAACAGTTCAGATTTGCTAAACTAAACAGGGTGCTACTCCTAAATCTA
AAAGGCATATATTACAACTCTTGTCAACTGCTAACACAGACGATTCCCCTAATTACACAGCAAGAACACCAAAAGCATGA
AGATGTTTCTGCTCCGGAATCGTTAGACCAGCCATTTGGTCGTTTTGCATGTTTCCTGGATGTTGAAAGCATGCACATCA
TCGATTGGAACATCTGCCTCCTTAAAGAGCCACCTAGATAAGCAATGGTTTTATCCTGCATTCTGAAACATGTCCAAATT
AGTGCGAGCTGGTTACATGAAAAGTTAAGATGTCCCTAGCAAAAATAGTGTATTTGCATACTTGCATATCATCTCGTAAA
AATTCATATCAAAGGAACATCAACATATACCTTCAAGAAAATTGAGCGGCTTTAAACACTAGCATCTTTGTCTTGGAATT
AACATGGCCTTAATATAGTTCACAAATTAACATAGCTAAATGAAACAATATTGCTACAGATCACTTGATGAGTTCAGATT
CCTACATCATCCCATGGTAGGCACAAAAGCACACCTACAGGATAAAATAAAGAACTAGGACCTAAAAAACTTTGAAGAAA
ACAATACGACATTAAATATGGGAAATGGCAAATAACCTTCGAGACTGGTGCACCTTCTTATCCCCCTGATCTATTTTCAA
GCTTCTTGACCTATAAGACCATGTAAAAAAAATCATTTGTTGAACTACGAGACCATGACATGCTCACAAACAATTGAGTT
ATATTCACCTATTTTTTCCCCCTTTTTCCGTTTGTTGTCGGGTGTGAACCCTGCTTCCTCTTTGTGCTAATAGTGTATTT
ACCCATAACATTTGTTAAATCTCAGCTCAACATTAATGGTCAGTAAGCTAGTTTATTACAGCTGCATACATTTCTAGTAC
TCAGTTGTCCCAGCCTGACATAGAATTCAACTGGGATTTTTGTTAGTCAAACATTCTTGGGCCTCGTCTGGTATGAATTT
AGTGAATCACTCAATCTATAGACAGTACTTCGAAATAGTCTAAATGTCACTTACTCGACTAAAAATACATTTTGGTCTGA
ACTTGCGCTAGTCTGTACATGTGATTTTCAACTATACTATATGTAAGAAAGATTCTATTACACTCTATAAGAAAGATTAT
GTGTATAATTCAGCTAGAAATATTAAGAGAGGAAGCAGCAGACAACATTTAAACACTGCTAGATTTTCATGCTTAGCAAT
ATGTTGTAACAGAGTGACTGAACAAGAACTTTTGTCCGCATAGCAAGCATTCTTCTAATTCTGCAAAGATTAAAATATTG
ATGCATATATTTGCTCTGAACTAACTTAAACATCTGCTGGTACTGCATGGCGAGACATGAAATTTCCATAACCACAACTA
ACATTAGATGTAGTTGTACTTTCCGCTTCTTTTGTTTGTTGTCATACAGTTGCAACAGCTACTTTCAGTTCATAATTTTA
GGCACATCATAGCAGACTTCAAGGACTGCATTATGGATAGCAATACACGATACTATGAAATTGGAGGATGAACTAACCAA
ATGCAGTGCAGCTCCTTCAATATTTGTTGAGGAACGTGCAGCAGGCAAGTACGGACTACAACTCACGCCTGCTCCAGAAT
CGCTAATGCATGCATCTCACTACAATTGGAGAAATCGACCGAACGACACCGACTCCCGCAGCGCGGACATCCAATCCTAA
AATCAAATGAGCAAAATAAAAAAATCAAGTGCGAGAAATGACCACATGCGTATGGCGAAGGAGGCGCTGCCTCTTACCTG
ATCGTCCTTGCCGAGGGTCTCCGGCTCCCGCGACGCGTTTGGCTCCAGCGACGGCGGGGGAAGGTCCATCTCGACTCCTA
TGAAACTGACCGGATCTGAGCCAAGGAATCCGCAGGCGCGCGAGCCTTATAGGTTGCGCTGGATCTGGGCTAGCAACAGT
GGATGGGGGAATATGCCCTAGGCAGCGGCGGCGGCGAATTGTATCAGGGAAGAAGCGAACAGAGAAGATGGATATTCACT
TCGTCGCTGAATTAGGGAATAAAGCAGGGTGTTTTCTGCATACACTGCAACGCCAAGGGACCCTCTCAATCCTGTACCAC
CAGTCCAGATCGAACGGCCCACCTAGTCTTGTATCACGGGAGCACCTCAGGTCTCCTATCATCAGATATCTACCCTACCG
TCAACCATCCAACAAGCCGACGCCC--GTGCATCGTTCCCCAAGATGCTCTAGCCGCTCAGTGGGCACGTGGCAGCAAGT
CGGCTGCGCTCACACGCCGACAAGCCGTCCCATCCCGACGCCACGTACGTGATGTGGCGCGACGCACCCACCGCCCCAGC
GTGGTATAAGATGGCCACCATGCGCTAAAGTTAACAGCACACGACACCATCGACACACCATCTTTCCATCTGCTTGTTCT
CATCGCCTCAAGAAGCTTTGCGTTGTATACGTTCGACCGGCCGCAAGATGTGGATGAG---GAAGAA------GGCGGCG
ACGACGAGGCCGGCGGCCAGGAGGAGGGCGCCGACGTCGCTAGAGGCGCTGTGGCGGCGCGTGGTCGGGCCGGCCCGCGG
CGGCAAGACCAAAAAGACCAAGACCAAGAAGAGCAAGATCGGGTCGCTCTCGCGCGCGTTCCGGGTGTTCTCCTGCGTCC
GCGGCCATGGCAAAGGGAGGATGGCTGCGCGCGCAGCGCGCCGGTACTGATCGGTCTGGGACGCGCACGGCCGCCGTCCG
GG------------------------------------------------------------------------------
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>chr4A_498
AGACACATA-----------------------------------------------------------------------
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--------------------------------TACAGTTGCGGACGCGGACTACAAAAGTATGGCCAACCAAGTGCCCCA
TTGTTTGTTTGTCTATCTA-TATCCATGAACGTGGCATAGACACCTAACCGCCCAAAGCGCATACGCATGTCGGCATCCA
CGTAAACCAACACCCGTGG---------CACACGGTCGACAACACGTTCACACCTCCTCACAGATCAACCATGACAGA--
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---------------------------------------------------------------------------TACCG
TCAACCATCCAACAAGCCTACGCCCCTGTGCATCGTTCCCCAAGACGCTCTAGCCGCTCAGTGGGCACGCAGCAGCAAGT
CGGCTGCACTCACACGCCGACAAGCCGTCCCATCCGGACGCCACGTACGCGATGTGGCGCGACGCACCCACCGTCCCAGC
GTGGTATAAGATGGCCACCATGCGCTAAAGTTACCAGCACACGACACCATCCTCACACCATCTCTCCATCTGCTTGTTCT
CA-CGCCTTAAGAAGTTTTGCGTAGT-TACGCCCGACCGGCCGCAGGATGTGGATGAG---GAAGAAGAAGGCGGCGACG
ACGACGAGGCCGGCGGCCAGAAGGAGGGCGCCGACGTCGCTAGGGGCGCTGTGGCGGCGCGTGGTCGGGCCGGCCCGCGG
CGGCAAGGCCAAAAAGACCAAGACCAAGAAGAGCAAGATCGGGTCGCTCTCGCGCGCGTTCCGGGTCTTCTCCTGCGTCC
GCGGCCATGGCAAAGGGAGGATGGCTGCGCGC---------CGGTATTGATGGGCCTGCGGCGCGCACGCCCACCGTCCG
GGCGTCGA------------------------------------------------------------------------
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>SNPs
SSSSSS-S-------S---S----SS------------S-------------------------S-S---S----S----
S---S-----S--SS------------S----S--S-------S--S----SS---S--S--S------SSS-------S
---S---S---S-S---S--S---------S-SS-------S-S-S----S-S-----------------------S--S
S------SS-S--------SS----S--S--S-SS---------S----S-S-----SS-------------SS---SS-
SSSSS-SSS-S-SSS--S-SSSS-SSSSS-S-S-------------S-S-----S--S------S-----S---S--S--
--S-S------SS-S-S---S---------S---SS-S---SSS---SSSS-SS--SSSSSSSSSSSSSS--S---S---
--S-------S--------SSSSSSSSSS-----S-----------S---------------------------------
--------------S--------------------------------S--------------------------------
-------------------SSSSSSSSS---------------------S------------------------------
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------------S-----S-------------------------------------------------------------
-----------S--S----------------------------------------------------------------S
---------------------------------S-----------------S----------------------------
-------------------------------------------S--------------SSS-------------------
--------------------------------------S-----------------------------------------
-----------------------------------------------------------------S--------------
----------------------------S------------S--------------------------------------
--S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_323
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---------------------------------------------------------------CCAGAGCAGTGCAGTCA
GAA-----------------------------------------------------------------------------
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>reverse_4732
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-----------GGACGATAAGGGCTGATGGG-------------------------------------------------
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