>input_sequence_86265
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---------------ATGGGGGCGGTGGTGACCGCGGTGATCGCGATCGCGGCGGTGGTGCTGGGCTGGATCACCATCGA
GATGGCCTGCAAGCCCTGCCTCGAGACCGGCCGCCGCGCCATGGACCGTGCCCTCGACCCCAACTACGACCCCGACGACT
ACCCCGCAGCCAACTCCACCGCGCCACCCACTAGCGAGCCGCTACTCGCCGACCTCTCCGCCTCCGCCGCGGCGCCAGCC
AAGGCCATCTGA--------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G266500
CTTCTTGTTTCATGGTTGGTGAGTGTATTCGGTACCTGTTATGCGTGGAAAGACAAAAAAAAA-----TGGCCGATCAAG
AATAGTGTTAAACTAGTGTCGACGTTGGAGTATCAGTGTTCGCACCAAGCAAATGTTTGATTTCCGTAGTTTTTACATCA
TGTTCATGCATTCTGAATCTGTGAGCACTATGATCGTGTCTGTACTTCTAATTTTTTGTATAATTTGTCGATGCATATTA
CCATGACGAGGAACGTGTCCTGATTACTGAATTTTTGTGAAACAAAACATGCATTCTGAATTTGTTTCAGACATGTAGAA
TTGCATTCTGAATTCCTGGTCGGGATAGAAAATGCATGCAAGCTTGAGTACGTATTTATGGCGTGGTGTGTAAACTCTGT
CTCTGTTTGATTCAAAATTCGAAATTGAGCAGAGATGGTTCGGTTTTGCCAACTCAGGTGCGACATGGAGAAAGATTGGG
CTTGATTAAATGAATCGTGGAGGGGAAGATTGGTAAGGTGCGGAGAATTAATGAGCAGCAGCCAGTGTCAGCCCAGAATC
GTCGCCAAAACGGCCCACCCTGTCTGTGGACGTCTG---------------------------AGCAAGACCGGCATGGC
AGACGTGG-CCACGGGAAACTGTTCATCAATCTCTATACGGGAATAATGCCTGGGCCTATATGCAAGTGTTTGTGGATCA
CGAGGCCTACGAGCGGAGAGGAT------AGCACCTGTGCTCGCGCTCAGAAGATCACTTCCGAAACACATCTAACTTTA
TTCCATCATTCCAACTGTACAATACCACGGCCCAGCTTAAATAAGCGGCCCAGTACAGTAGTACACTAGAAATCCAGGTC
CAGACGAGCGAGCCCATCCGCACAAGCTTCGGCGAGCCGGCAGAATCCTCGTCCAGTCCGACAACCAAGCCGGCTAATAA
CTGTCGTAACCA----------------GTCAGTCATCTTCAACCTCCAGATCCGCGTTTGGCCAGCGAGTCGCACAAGG
GAGGGTTGTGATCCGATGGGGGCGGTGGTGACCGCGGTGATCGCGATCGCGGCGGTGGTGCTGGGCTGGATCACCATCGA
GATGGCCTGCAAGCCCTGCCTCGAGACCGGCCGCCGCGCCATGGACCGTGCCCTCGACCCCAACTACGACCCCGACGACT
ACCCCGCAGCCAACTCCACCGCGCCACCCACTAGCGAGCCGCTACTCGCCGACCTCTCCGCCTCCGCCGCGGCGCCAGCC
AAGGCCATCTGATGCGTTTCTTGCTCTCAGCGTCGTCAGTGCACCAATGCTAGGCTTCCCTTTCATCCTTACTCCAGCCA
TGTTTGTCTATCTATGAGTTTGCGTGTTTGGTTCTTGTGGCTTTTGTTATG-----ATGTGACAAGAACTTGCTTTATGT
TATAACATGTTATGAAATGAGATATGGTGGTGATCTGTATATAGGATGCCCTGTGTATGCGGTCCTGAATTCCTGATTGA
GACTTCCAGCTTTCTATGCAAAGCAGATGATACCCTGATTTACATTTCTGAATTGGCATTTCAGTATGTCGTGGGAGCAC
GG---------------------------TGTGCATTGCAATGTACTGTACATACATGTCAAGAGTAAAATCTGTGGGAC
AATATATATGATTACATTGGAGACATTTCGAGATTGGTACCGTGTGTGAGGTCAATCCTCCAATGGTGTTGCCTCGTTTT
CTGTCTCATCATCATCCACGATGT--TCATTTTCGTCGGCTGGAGTTTCAGGATCAGTCTCCATCTGTTCTTGTTCTGCA
TCATTTGGGCCGTCATCCACGTCGCCATACACCTGAGAGCTTACCACATGCCCATGCAAATCCTTGTGCTTCAGATTACC
TATCACAAAATGGAGAAAAGTAGTTGGCATTGCTGAAAATCGTAGATCCAAATGAGATATGGCTGATAGTGTTGTAG---
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--------------TAGTACTAACTACGTAGCTAACTGCAGTCTGTGTATAGCTAGGCATAGTTGTGAAGAAATTGCAAA
TCAGATCACAGTGTTTACCAATCCAGCAACGCTCCACATTAGAGCAGTGTTCCAGGAGGGCCTTCACTTGGAAGAGAAAC
CGCTCCATGGATCTCTTTGTGGCAGGTATCTTGCTCGTGATCATTGTTCGCTTGTAACCCTAAACA---TCAAAATACTT
TTCTAAGCATGGAACACATAATTTATGGTATGAACATCGATGATCAAATATTATCGATTGTGCCTGGTGAGAATTAAAAG
GTTATCAATTCTACCTTTGCCTCTGC
>chr6B_1
CTTCTTGTTTCATGGTTGGTGAGTGTATTCGGTACCTGTTATGCGTGGAAAGACAAAAAAAAAAGAAATGGCCGATCAAG
AATAGTGTTAAACTAGTGTCGACGTTGGAGTATCAGAGTTCGCACCAAGCAAATGTTTGATTTTCGTAGTTTTTACATCA
TGTTCATGCATTTTGAATCTGTGAGCACTATGATCGTGTCTGTACTTCTAATATTTTGTATAATTTGTCGATGCACATTA
CCATGACGAGGAACGTGTCCTGATTACTGAATTTTTGTGAAACAAGACATGCATTCTGAATTTGTTTCAGACATGTAGGA
TTGCATTCTGAATTCCTGGTCGGGATAGAAAATGCATGCAAGCTTGAGTACGTATTTACGGCGTGGTGTGTAAACTCTGT
CTCTATTTGATTCAAAATTCGAAATTGAGCAGAGATGGTTCGGTTTTGCCAACTCAGGTGCGACATGGAGAAAGATGGCG
CTTGATTAAATGAATCGTGGAGGGGAAGATTGGTAAGGTGCGGAGAATTAATGAGCAGCAGCCAGTGTCAGCCCAGAATC
GGCGCCAAAACGGCCCACCCCATCTGTGGACGTCTGAGCCAGAGCCCAGGTATCTCACGGCGTAGCAAGGCCGGCATGGC
AGACGTGGGCCACGCGAAACTGTTCATCAATCTGTATATGGGAATAATGCCTGGGCCTATACACAAGTGTTTGTGGATCA
CGAGGCCTGCGAGCGGAGAGGATAGCGCGAGCACCTGTGCTCGCGCTCAGAAGATCACTT--------------------
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>chr2D_782
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--------------------AATACCACGGCCCAGCTTAAATAAGCGGCCCAGTACAGTAGTACACTAGAAATCCAGGTC
CAGACGAGCGAGCCCATCCG---------CGGCGAGCCGGCAGAATCCTCGTCCAGTCCGACAACCAAGCCGGCTAATAA
CTGTCGTAACCATACCATTCCTTGCTTGGTCAGTCATCTTCAACCTCCAGATCCGCGTTTGGCCAGCGAGTCGCACAAGG
GGGGGTTGTGATCCGATGGGAGCGGTGGTGACCGCGGTGATCGCGATCGCGGCGGTGGTGCTGGGCTGGATCACCATCGA
GATGGCCTGCAAGCCCTGCCTCGAGACCGGCCGCCGCGCCATGGACCGTGCCCTCGACCCCAACTACGACCCCGACGACT
CCCCCGCAGCCAACTCCACCGCGCCACCCACTAGCGAGCCGCTACTCGCCGACCTCTCCGCCTCCACCGCCGCGCCAGCC
AAGGCCATCTGATGCGTTTCTTGCTCTCAGCGTCGTCAGTGCACCAGTGCTAGGCTT-CCTTTCATCCTTACTCCAGCCA
TGTTTGTCTATCTATGAGTTTGCGTGTTTGGTTCTTGTGGCTTTTGTTATTACAGTATGTGACAAGAACTTGCTTTATGT
TATAACATGTTATGAAATGAGATATGGTGGTGATCTGTATATAGGATGCCCTGTATATGCGATCCTGAATTCCTGGCTGA
GACTTCCAGCTTTCTATGCAAAGCAGATGATACCCTGATCTACATTTCCGAATTGGCATTTCAGTATGTCGTGGGAGTAC
GG---------------------------TGT---------------------------CAAGAGTAAAATCTGTGGGAC
AATATATATGATTACATTGGAAACATTTCGAGATTGGTACCGTGTGTGAGGTCAATCCTCCAATGGTGTTGCCTCGTTTT
CTGTCTCATCATCATCCACGATGTTGTCATTTTCGTCGGCTGGAGTTTCAGGATCAGTCTCCATCTGTTCTTGTTCTGCA
TCATTTGGGTCGTCATCCACGTCACCGTACACCTGAGAGCTTACCACATGCCCATGCAAATCCTTGTGCTTCAGATTACC
TATCA-AAAATGGAGAAAAGTAGTTGGCATTGCTGAAAATCATAGATCCAAATGAGATATGGCTGATAGTATTGTAG---
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--------------TACTAAC-------TAGCTAACTGCAGTCTGTGTATAGCTAGG-----------AGAAATTGCAAA
TCAGATCA--GTGTTTACCAATCCAGCAACGCTCCACATTAGAGCAGTGTTCCAGGAGGGCCTTCACTTGGAAGAGAAAC
CGCTCCATGGATCTCTTTGTGGCAGGTATCTTGCTCGTGATCATTGTTCGCTTGTAACCCTAAACAAGATCAAAATACTT
TTCTAAGCATGGAACACATAATTTATGGTATGAACATCGATGATCAAATATTATCGATTGTGCCTGGTGAGAATTAAAAG
GTTACCAATTCTACCTTTGCCTCTGC
>chr2A_782
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--------------------AATACCACGGCCCAGCTTAAATAAGCGGCCCAGTACAGTAGTACACTAGAAATCCAGGTC
CAGACGAGCGAGCCCATCCGCACAAGCTTCGGCGAGCCGGCAGAATCCTCGTCCAGTCCGACAACCAAGCCGGCTAATAA
CTGTCGTAACCATACCATTCCTTGCTTGGTCAGTCATCTTCAACCTCCAGATCCGCGTTTGGCAAGCGAGTCGCACAAGG
GAGGGTTGTGATCCGATGGGGGCGGTGGTGACCGCGGTGATCGCGATCGCTGCGGTGGTGCTGGGCTGGATCACCATCGA
GATGGCCTGCAAGCCCTGCCTCGAGACCGGCCGCCGCGCCATGGACCGTGCCCTCGACCCCAACTACGACCCCGACGACT
CCCCCGCAGCCAACTCCACCGCGCCACCCACTAGGGAGCCGCTACTCGCCGACCTCTCTGCCTCCGCCGCCGCGCCAGCC
AAGGCCATCTGATGCGTTTCTTGCTC--AGCGTCGTCAGTGCACCAGTGCTAGGCTT-CCTTTCATCCTTACTCCAGCCA
TGTTTGTCTATCTATGAGTTTGCGTGTTTGGTTCTTGTGGCTTTTGTTATTACAGTATGTGACAAGAACTTGCTTTATGT
TATGACATGTTATGAAATGAGATATGGTGGTGATCTGTATATAGGATGCCCTGTATATGCGATCCTGAATTCCTGATTGA
GACTTCCAGATTTCTATGCAAAGCAGATGATACCTTGATCTACATTTCTGAATTGGCATTTCAGTATGTCATGCGAGCAC
GGTGTGCATTGCAATGTACTGTACATACATGT---------------------------CAAGAATAAAATCTGTGGGAC
AATATATATGATTACATTGGAAACATTTCGAGATTGGTACCGTGTGTGAGGTCAATCATCCAATGGTGTTGCCTCGTTTT
CTGTCTCATCATCATCCACGATGTTGTCATTTTCGTCGGCTGGAGTTTCAGGATCAGTCTCCATCTGTTCTTGTTCTGCA
TCATTTGGGTCGCCATCCACGTCGCCGTACACCTGAGAGCTTACCACATGCCCATGCAAATCCTTGTGCTTCAGATTACC
TATCA-AAAATGGAGAAAAGTAGTTGGCATTGCTGAAAATCGTAGATCCAAATGAGATATGGCTGATAGTGTTGTACTCC
CTCCGTCTCAAAATAAGTGACTCAACTTTGTACTAAGTTTAGTACAAAGTTAGTACAAAGTTGAGTCACTTATTTTGGGA
CGGAGGGAGTAGTATACTAAC-------TAGCTAACTGCAGTCTGTGTATAGCTAGGCATAGTTGTGAAGAAATTGCAAA
TCAGATCA--ATGTTTACCAATCCAGCAACGCTCCACATTAGAGCAGTGTTCCAGGAGGGCCTTCACTTGGAAGAGAAAC
CGCTCCATGGATCTCTTTGTGGCAGGTATCTTGCTCGTGATCATTGTTCGCTTGTAACCCTAAACAAGATCGAAATACTT
TTCTAAGCATGGAACACATAATTTATGGTATGAACATCGATGATCAAATATTATCGATTGTGCCTGGTGAGAATTAAAAG
GCTACCAATTCTACCTTTGCCTCTGC
>SNPs
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------------------------------------S--------------------------S----------------
------------S---------------------------------------S----------------------S----
---------------------------------------------S--------------------------------S-
----------------------------------------------------------S---------------------
----S-----------------------------------------------------------------------S-S-
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-S------------------SS-----------------------------------------------S----------
--------------S------------------S----S----------------------SS-----------------
--------S---------------------------------------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS------------------------------------------------------------
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S---------------------------------------------------------------------S---------
----------------------------------------------S----------S----------------------
--------------------------------------------------S-----------------------------
------------------------------------------------------S------S------------------
---------------------------------------S----------------------------------------
--------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
---------------------S----------------------------------------------------------
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---------S----------------S-----------------------------------------------------
-----S--------------------------------------------------------------------------
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----------------S--SSSSSSSSS----------------------------------------------------
--------SS----------------------------------------------------------------------
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----S---------------------
>forward_562
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--------------------------------------------------------------CAGTGTCAGCCCAGAATC
GT------------------------------------------------------------------------------
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>reverse_2106
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-------------------------ACGTAGCTAACTGCAGTCTGT----------------------------------
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