>input_sequence_86263
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------------------------------------------------------------------------------AT
GGGGGCGGTGGTGACCGCGGTGATCGCGATCGCTGCGGTGGTGCTGGGCTGGATCACCATCGAGATGGCCTGCAAGCCCT
GCCTCGAGACCGGCCGCCGCGCCATGGACCGTGCCCTCGACCCCAACTACGACCCCGACGACTCCCCCGCAGCCAACTCC
ACCGCGCCACCCACTAGGGAGCCGCTACTCGCCGACCTCTCTGCCTCCGCCGCCGCGCCAGCCAAGGCCATCTGA-----
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>chr2A_1_TraesCS2A01G250300
GGTATGGCTTTGCTTCTGCGAGAAGCACGGCTGTGCCTCTTGAAAATGGAAAAAACACGTTTTTTTACGAGAAG------
-----------------CACGGTTTTGCTTCTGCGAGAGGCACGGTTGTGC-----------------------CTCTCA
GAAAC---AAAAAAAAATGTGTTTTCTCTTTTTT--TT--CATGAGATGCATGGTTTTGCTTCCACGAGAGGTATGGTTT
TGCTTCCGCGAGAGGCACGGCCATGCCTCTCGGAAACGGAAAAAACATGTTTTATCTTTTTTTCCTTCCATGAGAGGCAC
GATTTTGCTTCTGCGAGAGGCATGGTTTTGCTTCCACGAGAGGCACGGTCATGCATCTCGAAACCTCTCAAAAAC-AAAA
AAAAAATGTGTTTTCTCTTCTT-------------------TCTTTTTTCCATGAGAGGCACGATCTTACTTCCGCGAGA
GGCA------------------------------GCGGCTTTTGAAAAAGAAAAGGAAAACATGCTCCAAGTCC-GGTAT
TTTTGCTCGGTTTTTTCATG-AAAAAAAGTTTATCAAAACCTATCAGCATGA-ATCTAGTTTTAAAGATCTGAACGTAAG
GAATCTAACGGTGAAAATGGTTCGAGATTTGAACGCACGGGTTAAGAGATAAATCGTTTTGAATAAATGGATCTAGGAAA
AAAGAGTC-----------TTGTCCCGACTTAAAAAGGTGGAAGTGATTTTTATGAAAGTACTTTCTCAATTAGTGATTT
CGCACAGCAATTTCCGGCGCTCCACCCCAGATCGATTTCTTTCACGACCACCTTTTTTTTTAGACAAACCTA-TCAAACA
AGAAATACCACGGCCCAGCTTAAATAAGCGGCCCAGTACAGTAGTACACTAGAAATCCAGGTCCAGACGAGCGAGCCCAT
CCGCACAAGCTTCGGCGAGCCGGCAGAATCCTCGTCCAGTCCGACAACCAAGCCGGCTAATAACTGTCGTAACCATACCA
TTCCTTGCTTGGTCAGTCATCTTCAACCTCCAGATCCGCGTTTGGCAAGCGAGTCGCACAAGGGAGGGTTGTGATCCGAT
GGGGGCGGTGGTGACCGCGGTGATCGCGATCGCTGCGGTGGTGCTGGGCTGGATCACCATCGAGATGGCCTGCAAGCCCT
GCCTCGAGACCGGCCGCCGCGCCATGGACCGTGCCCTCGACCCCAACTACGACCCCGACGACTCCCCCGCAGCCAACTCC
ACCGCGCCACCCACTAGGGAGCCGCTACTCGCCGACCTCTCTGCCTCCGCCGCCGCGCCAGCCAAGGCCATCTGATGCGT
TTCTTGCTC--AGCGTCGTCAGTGCACCAGTGCTAGGCTT-CCTTTCATCCTTACTCCAGCCATGTTTGTCTATCTATGA
GTTTGCGTGTTTGGTTCTTGTGGCTTTTGTTATTACAGTATGTGACAAGAACTTGCTTTATGTTATGACATGTTATGAAA
TGAGATATGGTGGTGATCTGTATATAGGATGCCCTGTATATGCGATCCTGAATTCCTGATTGAGACTTCCAGATTTCTAT
GCAAAGCAGATGATACCTTGATCTACATTTCTGAATTGGCATTTCAGTATGTCATGCGAGCACGGTGTGCATTGCAATGT
ACTGTACATACATGT---------------------------CAAGAATAAAATCTGTGGGACAATATATATGATTACAT
TGGAAACATTTCGAGATTGGTACCGTGTGTGAGGTCAATCATCCAATGGTGTTGCCTCGTTTTCTGTCTCATCATCATCC
ACGATGTTGTCATTTTCGTCGGCTGGAGTTTCAGGATCAGTCTCCATCTGTTCTTGTTCTGCATCATTTGGGTCGCCATC
CACGTCGCCGTACACCTGAGAGCTTACCACATGCCCATGCAAATCCTTGTGCTTCAGATTACCTATCA-AAAATGGAGAA
AAGTAGTTGGCATTGCTGAAAATCGTAGATCCAAATGAGATATGGCTGATAGTGTTGTACTCCCTCCGTCTCAAAATAAG
TGACTCAACTTTGTACTAAGTTTAGTACAAAGTTAGTACAAAGTTGAGTCACTTATTTTGGGACGGAGGGAGTAGTATAC
TAAC-------TAGCTAACTGCAGTCTGTGTATAGCTAGGCATAGTTGTGAAGAAATTGCAAATCAGATCAA--TGTTTA
CCAATCCAGCAACGCTCCACATTAGAGCAGTGTTCCAGGAGGGCCTTCACTTGGAAGAGAAACCGCTCCATGGATCTCTT
TGTGGCAGGTATCTTGCTCGTGATCATTGTTCGCTTGTAACCCTAAACAAGATCGAAATACTTTTCTAAGCATGG
>chr2A_68
CGAGAGACACGGTTGTGCTTTCGCGAAAGTCACAACCGTGCCTCTCGGAAAGGGAAAAACAAAACGCGTTTTTTGTTTTT
TTTTCTTTCGCGAGAGTCACGCTTTTGCTTCTGCGAGAGGCACGGTTGTGCTTTCGCGAGAGTCACGACCGTGCCTCTCG
GAAAGGGAAAAAAAATATGCGTTTCTTCTTTTTTGTTT--CGCGAGAGTCACGGTTTTGCTTTCGCGAGAGGCACGGTTG
TGCTCTCGCGAGAGTCACGACCGCGCCTCGCGGAAACGGAAAAAACGTGTTTTCTGTTTTTTTTCTTCCACGAGAGTCAC
-----------------------GGTTTTGCTTCCACGAGAGGCACGGTTGTGA--------------------------
----------------------------------------------------------------------TTTCGCAAGA
GGCACGGG-----------------------CGTGCCTCTTTCGGAAAGGGAAAAAACTG--TGCTCCCGGTTC-GT--T
TTTTTGTCCGTTTTTTCGTGAAAAAAAAGTTCGTCAAAACCTATCAACATGGGATCTAGTTTTGAAGATCTCGACGCGAG
AAATCCAATGGAGAAAATGGTTCGAGATTTGAACGCACGGTTTAAGAGATAAAACGTTTTGAATAAACGGATCTATGAAA
AAA-----------------------------------------------------------------------------
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>chr4B_70
---------------------------------------------------------------------AGAGG------
-----------------CACGATTTTGCTTTCGCGAGAGGCACGGCCATGC-----------------------CACTCG
GAAAC---GTAAAAAAACACGTTTTCTGTTTTTTATCTTCCGCAAGATGCATGGTTTTGCTTCCACGAGAGGCACGATTT
CGCTTTCGCGAGAGGCACGACCGTGTCTCTCGGAAATGAAAAAAACGCGCTTTCTCTTTTTTTTCTTTCATGAGGGGCAC
GGTTTTGCTTCCGCGAGAGGCATGGTTGTGCTTTCGCGAGAGGCACGGCCGTGCCT---------TCTCGGAAACGAAAA
AAACACCTATTTTATT---------------------------TTTCTTCCGCGAGAGGCACGGCTTTTCTTCCACGAGA
GGCACGGTTGTGATTTCATGAGAGGCGCAACCGTCCCTCTTTCGGAAAGGGAAAAAACGG--TGCTCTCGGTTTGGT--T
TTTTCGTCCCTTTTTTTGTGAAAAAAAAGTTCGTCAAAACCTATCAACATGCGATCTAGTTTTGAAGATCTCGACGTGAG
GAATCCAATGGTAAAAACGGTTCAAGATTTAGATGCACGGTTTAAGAGAGAAAACGTTTTGAATAAACAGATGTATGAAA
AAA-----------------------------------------------------------------------------
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>chr2D_110
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---------------------------------------------------------------------------TCTCA
GAAAC---GAAAAAAAC-GCGTTTCTC--TTTTT--TT--CGTGAGATGCATGGTTTTGCTTTCACGAGAGGCATGGTTT
TGCATATGTGAGAGGCACGGTCGTGCCTCTCGGAAACGACAAAAACATGTTTTCTCCTTTTTCCCTTCCGTGAGAGGCAC
GATTTTGCTTCTGCGAGAGACATGGTTTTGCTTTCACGAGAGGCACGGCCGTGCATCTCGAAACCTCTCAGAAACGAAAA
AAAAAACATGTTTTCTCTTTTTTTTTCTATGAGAGGCACAATTTTGCTTCCGCGAGAGGCACGGTTTTCCTTCCGCGAGA
GGCA------------------------------ACGGCTTTCGAAAAAGAAAAGGAACG--TGCTCCAGGTCC-GGAAT
TTTTGCTCCGTTTTTTCATG-AAAAAAA-TTCGTCAAAACCTATTGACATGA-ATCTAGTTTTAAAGATTTGGACGCGAG
GAATCTAACGATGAAAACGGTTCAAGATTTGAACGCACGGGTTAAAAGATAAATCGTTTTGAATAAATGAATCTAGGAAA
AAGGAAAAATTCTCGCCATTTGTCGCGACCTGAGAAGGTGAAAGTAATTTTTGGAAGGAGTACTC---------TGATTT
CGCACAACAATTTCCGGCGCTCGACCCCAGATCGATTTCTTTCACGACCACCTTTTTTTT-AGACAAACCTACTCAAACA
AGAAATACCACGGCCCAGCTTAAATAAGCGGCCCAGTACAGTAGTACACTAGAAATCCAGGTCCAGACGAGCGAGCCCAT
CCG---------CGGCGAGCCGGCAGAATCCTCGTCCAGTCCGACAACCAAGCCGGCTAATAACTGTCGTAACCATACCA
TTCCTTGCTTGGTCAGTCATCTTCAACCTCCAGATCCGCGTTTGGCCAGCGAGTCGCACAAGGGGGGGTTGTGATCCGAT
GGGAGCGGTGGTGACCGCGGTGATCGCGATCGCGGCGGTGGTGCTGGGCTGGATCACCATCGAGATGGCCTGCAAGCCCT
GCCTCGAGACCGGCCGCCGCGCCATGGACCGTGCCCTCGACCCCAACTACGACCCCGACGACTCCCCCGCAGCCAACTCC
ACCGCGCCACCCACTAGCGAGCCGCTACTCGCCGACCTCTCCGCCTCCACCGCCGCGCCAGCCAAGGCCATCTGATGCGT
TTCTTGCTCTCAGCGTCGTCAGTGCACCAGTGCTAGGCTT-CCTTTCATCCTTACTCCAGCCATGTTTGTCTATCTATGA
GTTTGCGTGTTTGGTTCTTGTGGCTTTTGTTATTACAGTATGTGACAAGAACTTGCTTTATGTTATAACATGTTATGAAA
TGAGATATGGTGGTGATCTGTATATAGGATGCCCTGTATATGCGATCCTGAATTCCTGGCTGAGACTTCCAGCTTTCTAT
GCAAAGCAGATGATACCCTGATCTACATTTCCGAATTGGCATTTCAGTATGTCGTGGGAGTACGG---------------
------------TGT---------------------------CAAGAGTAAAATCTGTGGGACAATATATATGATTACAT
TGGAAACATTTCGAGATTGGTACCGTGTGTGAGGTCAATCCTCCAATGGTGTTGCCTCGTTTTCTGTCTCATCATCATCC
ACGATGTTGTCATTTTCGTCGGCTGGAGTTTCAGGATCAGTCTCCATCTGTTCTTGTTCTGCATCATTTGGGTCGTCATC
CACGTCACCGTACACCTGAGAGCTTACCACATGCCCATGCAAATCCTTGTGCTTCAGATTACCTATCA-AAAATGGAGAA
AAGTAGTTGGCATTGCTGAAAATCATAGATCCAAATGAGATATGGCTGATAGTATTGTAG--------------------
-----------------------------------------------------------------------------TAC
TAAC-------TAGCTAACTGCAGTCTGTGTATAGCTAGG-----------AGAAATTGCAAATCAGATCA--GTGTTTA
CCAATCCAGCAACGCTCCACATTAGAGCAGTGTTCCAGGAGGGCCTTCACTTGGAAGAGAAACCGCTCCATGGATCTCTT
TGTGGCAGGTATCTTGCTCGTGATCATTGTTCGCTTGTAACCCTAAACAAGATCAAAATACTTTTCTAAGCATGG
>chr2B_766
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---AATACCACGGCCCAGCTTAAATAAGCGGCCCAGTACAGTAGTACACTAGAAATCCAGGTCCAGACGAGCGAGCCCAT
CCGCACAAGCTTCGGCGAGCCGGCAGAATCCTCGTCCAGTCCGACAACCAAGCCGGCTAATAACTGTCGTAACCA-----
-----------GTCAGTCATCTTCAACCTCCAGATCCGCGTTTGGCCAGCGAGTCGCACAAGGGAGGGTTGTGATCCGAT
GGGGGCGGTGGTGACCGCGGTGATCGCGATCGCGGCGGTGGTGCTGGGCTGGATCACCATCGAGATGGCCTGCAAGCCCT
GCCTCGAGACCGGCCGCCGCGCCATGGACCGTGCCCTCGACCCCAACTACGACCCCGACGACTACCCCGCAGCCAACTCC
ACCGCGCCACCCACTAGCGAGCCGCTACTCGCCGACCTCTCCGCCTCCGCCGCGGCGCCAGCCAAGGCCATCTGATGCGT
TTCTTGCTCTCAGCGTCGTCAGTGCACCAATGCTAGGCTTCCCTTTCATCCTTACTCCAGCCATGTTTGTCTATCTATGA
GTTTGCGTGTTTGGTTCTTGTGGCTTTTGTTATG-----ATGTGACAAGAACTTGCTTTATGTTATAACATGTTATGAAA
TGAGATATGGTGGTGATCTGTATATAGGATGCCCTGTGTATGCGGTCCTGAATTCCTGATTGAGACTTCCAGCTTTCTAT
GCAAAGCAGATGATACCCTGATTTACATTTCTGAATTGGCATTTCAGTATGTCGTGGGAGCACGG---------------
------------TGTGCATTGCAATGTACTGTACATACATGTCAAGAGTAAAATCTGTGGGACAATATATATGATTACAT
TGGAGACATTTCGAGATTGGTACCGTGTGTGAGGTCAATCCTCCAATGGTGTTGCCTCGTTTTCTGTCTCATCATCATCC
ACGATGT--TCATTTTCGTCGGCTGGAGTTTCAGGATCAGTCTCCATCTGTTCTTGTTCTGCATCATTTGGGCCGTCATC
CACGTCGCCATACACCTGAGAGCTTACCACATGCCCATGCAAATCCTTGTGCTTCAGATTACCTATCACAAAATGGAGAA
AAGTAGTTGGCATTGCTGAAAATCGTAGATCCAAATGAGATATGGCTGATAGTGTTGTAG--------------------
-----------------------------------------------------------------------------TAG
TACTAACTACGTAGCTAACTGCAGTCTGTGTATAGCTAGGCATAGTTGTGAAGAAATTGCAAATCAGATCACAGTGTTTA
CCAATCCAGCAACGCTCCACATTAGAGCAGTGTTCCAGGAGGGCCTTCACTTGGAAGAGAAACCGCTCCATGGATCTCTT
TGTGGCAGGTATCTTGCTCGTGATCATTGTTCGCTTGTAACCCTAAAC---ATCAAAATACTTTTCTAAGCATGG
>SNPs
S-SSS-S-SSS-S-SSSSSSSSSS-S-S-S-SSSS--SSSSSSSSSS-S--SSS-S-SSSSSSSSSSSS---S-------
---------------------S----------------------------------------------------------
-------------------S---------------------S------------------------------S-------
-----S----------------S------------------------------S--------------------------
--------------------------------------------------S-------------------S---------
------SS-----------S----------------------S---S----SS----------S-S--S-----------
------------------------------------------S---------------SSSS-------S-------S--
--------S----------------------SS-------------S-------------------------S----S--
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-----SSS----------------S----S-S-S------S----S------SSS-SSSSSSS-SSSSSSSSSS------
------S---------------S-------------------------------------S-------------------
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---------------------------------S----------------------------------------------
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-----------------S-----------------------S--------------------------------------
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------------------------------------------------------------------S-------------
------------------------------------------------------------------------S-------
-----------------S-----------------------------------S--S--------SSSSSSSSSSSSSSS
SSSSSSSSSSSS-----------------------------------S--------------------------------
----------------------------------------S---------------------------------------
---------------------------------------------------------------------------S----
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-----------------------------------------------------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
-----------------------------------------------------------------------S--------
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------------------------------------------------------S--------------------
>forward_20
GGTATGGCTTTGCTTCTGCG------------------------------------------------------------
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>reverse_1801
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----------------------------------------ATCCAATGGTGTTGCCTCGT--------------------
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