>input_sequence_86246
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-ATGGGGCTGTGGTCATTTCTTGAGGGTGTCCTGCTTATTGCTAACGCTTTGGCAATATTAAATGAAGACCGTTTCCTTT
CTCCCAGAGGATGGAGCTTCGCTGACGCTAGAGGCGTGCAGGGAGCAAACACCTTCAAAGGACAGATGATTGGCCTCATA
TACGCAGCTCAATACATGAGATTTCCATTGATCCTTCTTAATGGAATCACTATACTTGTGAAGTTTGTTTCATTCTGA--
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>chr1A_1_TraesCS1A01G279900
TCTCCCGCCACATCGCCCGGTCGGTCCATGTCAGCCCAACTCATACACGAAACCGGAGCCAGCCCTGCTTTTTTCT--AC
CGTCCGTCTCTATCTCC--------CCTCCGGCAACCGGCCGGAGCCGTTCCCCGCTCCGTAAAAG-----AGGACGGAG
ACCAGAGCCGTTCTCGCAGTGGCGGAATCCAAAATCGTCAAC---------------------TCGACGACCCAAACATT
GCCGCCCGGGCGAACTGGGATCGCAGACCCGTCCTGACTCGGCTTAATTTCTTCTCTGGTCGGTAAGGAACCCTAGCTCG
CTCGCCTGTTTTTGGTTCGTGAGAGGGTTTACCATCAAATCCATGGTTCGATTCGCCGATTCGGTTTGTATTTTTATTAA
TAAAGAGAGCCCAATCGATCTGTGTCCACCCATAAGTTTCTCCGG--GTTCTGTACCCCATGCATGTCTGCAGTTTGTTT
TTCAGTTTTTGTGAGACCAACCGAATCACCATAGTTCTCCACCGTGTAATTTTCTTCTTGGTCCGTTT----------AT
ATGTCACGGTGAAACATCATAATTCATAATTCGTGTTATACTTGTCAGGTTCTCGTGTTTGCATTTATACCATTATTAGG
AAAAGACGCTTACTGGGAAATCATAACCGGAACGACTGAACCTTTTCTGAATGGGCCTGTTTGTGTCAAATTAATGTGCT
GCAACCCC--------AAGATGGGTTCAGTTAATGGAGGGACAGTGACTGCATCCAGTCGGATGTATCATGGGTTCAAGA
CAAGTTGATACTGTTCTTACATAATCGTCCTAGCCCCAGTAAGAAATAATCTTAGATG---------------------A
TAC--TAGTATGATTCATCCAGTCAAAAAATTCATGTCAATTATCATTGCTCCCGTGGTACAGTATCTTTCAACCACAC-
-----------------------------------------ACAATTGCAATCTACGATAAAAATTTGGAAAGGAAAATT
CAGAGGGTTAAAAAGGACTCTCTTATGGGCTCCTTTCCTTGTGACTGATGTCCGAGTGTGATCCCTTCTTATTTTGCAGG
CATGGGGCTGTGGTCATTTCTTGAGGGTGTCCTGCTTATTGCTAACGCTTTGGCAATATTAAATGAAGACCGTTTCCTTT
CTCCCAGAGGATGGAGCTTCGCTGACGCTAGAGGCGTGCAGGGAGCAAACACCTTCAAAGGACAGATGATTGGCCTCATA
TACGCAGCTCAATACATGAGATTTCCATTGATCCTTCTTAATGGAATCACTATACTTGTGAAGTTTGTTTCATTCTGACA
GTGGGAAGTGGTACGCTATGCAGCTCTTCTTCGGTTTGCTTCCTTGAAGATTGAGATATTTGCACTCAAACCAGGCTTTA
TGTATATCTTCTCGTGATTCACCCCTTCTTCCAATAGTCTTCT-GTTGATGGTTGTATAGCTGTGCCTTGTATATGCACA
CTGCTGAGATGTGCAGTTGTGCTCAGCTAGTAATTTATTGGTTATCCG-------CAACACACTAGACGGTATGTGCCTA
ACTGTGATCTTTCATTGTTCTTTTGTATGTACATGATGTATTTGCATTTGTCCACTGTAATTTTTTCTTGTTATTCCTGA
TATTTTTTTGCATGATGGGATTTTTATTATCAAGC-AATGGAGCACTCATGTTTCCATCTTCATAGAAGCATCAGAGAAG
TTCTTATGTG-TATGATTTAGAGTGCCTCTCATAAACTAGACACTGTATAGTATTATATGGTTGGGTGCCACCACTTCTA
TGATAGAGTATATTTCATTAGTTATTATTG-----------------------GGTTTTTTTTATCATATGTGTTCAATG
TCAAACGTGGGTGTCATTTATTGGACGTCGGAGTGATTGCTCTGAATAAAGGTTATGGCCAATTCCTAT-TGTGTAGAAT
TTTTGAAGATACACAAACTTAGAAGCCATTGATGCTGACATTCAAGTTTATAGTCTGAGAAAAAAAGAACATTAAAATTC
CACGAGTAAACAGTAAGCATGGCATAAAAGGTATGCATCTCATAGCGATACCTAAGCATACTAGCACGTACAAAACATAG
AATCGAACCTTCTATGAGCAGCACATATACGGCTAGTATAAGTACGAGTAAACGAGGAATGAACAGATCATACCCTCCGG
TTGGCCAGGCCAACGCGGCGGCTGCAACAGCAGCCTCGGCGTCGTCCGTGGCCTTCTTCTTAGAGGCGGCGTCGTCGGCC
ATGGTGTCGATGCAGAGGAAGTAGTGGAAGCAGAGGCAAACAGAGTTGGGGACGGATTGGGAGCAGTCGCGT
>chr1B_51
--------------------------------------------------AATCGGAGCCAGCCGGCCTTTTGTTCTAAC
CGTCCGTCTCTATCCCCTCCTCCCCCCTCCGGCAA--GGCCGGAGCCGTTCTCCGCTCCGTAGAAAAGAAAAGGACAGGG
ACTAGAGCCGTTCTCCCGGTGGCGGAATCCGAACTCGTCAACTCGACGAGCCAAACCTCGCCGTC---------------
GCCGTCCGGGCGAACTGGGACCGCAGACCCGTCCTGACTCGGCTTAATTTCTTCTCTGGTCGGTAAGGAACCCTAGCTCG
CCTGCCTGTTTTTGATTCGTGAGAGGGTTCACCATCAAATCCATGGTTCGATTA--------GGTTTGTAT----TTTCT
TC-AGAGCGCGCGATCGATTTCCTCCCACCCGTAGGATTTATACCGTGGTT-----------------------------
-----------------------------------------------------------------------TGTATACAT
ATGTCGGGATAAAACAGCATAATTCATAATCG--GCA-----------------------GGATTTATACCGTGGTTGGG
AAAATTT--TAATTGAAAAAGCAGAACTGCAGTGATTGAACTTATTTTGAATGGGGCAGTTTGTGTCAGATTAATTTGCT
GCAAGCCCAGGCAATAAAGATGGGTTGCGTTAACCGAGGGACTGTGACTGTAGGATGTA---------------TCACGC
CAAGATCATAATGCTCTCAGATAATCCTCCTGGT--CATTAAGAAATAAGCTTATGCCGGATGAACTCTAGTGCGCGATA
CAC--CACTAGGATTCATTCTGTGGAAAAGGTTATGGGTTAGGAAATGTTTCAGACAGAATAAGGCGCTGGAGTGAAGAA
GCTACAAAAACACCTTTAGAAAAAGGACCGAGAACTACATTACAATTGCATTCTATAATGAGGATTTGGAAAC-AAAATT
CAGAGGGTTAAAAAGGACTGTCTCATGGGCTCCTTTCCTTGTGACTGATGTCCGACTGTGATCCCTTCTTATTTTGCAGG
CATGGGGTTGTGGTCATTTCTTGAGGGTGTCCTGCTTATAGCTAATGCTTTGGCAATATTGAATGAAGACCGTTTTCTTA
ATCCCAGAGGATGGAGCTTCGCTGACGCTAGAGGCATGCATGGAGCAAACACCTTCAAAGGACAGATGATTGGCCTCATA
TACGCTGCTCAATACATGAGATTTCCATTGATCCTTCTTAATGGAATCACTATACTTGTGAAGTTTGTTACATTCTGACA
GTGGGAAGTGGTATGCTATATAG---TTCTTCGGTTTGCTTCCTCGAAGATTGAGATATTTGCACTCAACT-AGGCTTCA
TGTAAATCTTCTCGTGCTTCACCCCTTCTTCCGATAGTCTT-T-GTTGATGGTTGTATAGCTGTGCCTTGTGTATGCACC
CTGTTGAGATGTGCAGTTGTGCTCAGCTACTAATTTATTGGTTATCCGGGACAAACAACAAACTAGACGGCAGGTGCCTA
ACTCTGATCTTTCATTGTTCTTTTGTATGTGCATGATGTATTTGCATTTGTCCGCTGTAATTTTTTCTTGTTATGCCTGA
TAATTTTTTGCATGATGGACTTTTTATTATGAAGG-AATGGAACACTCATGTTCCCATTTTCATAGAAGCATCAGAGAAG
TTCTTATGTGATATGATTTGGAGTGCCTCTCATAAACCAGGCACTGTA--GTATTATATGTTTGGTTTTCACCACTTCTA
TGGAGTAGAGTATTTCACTAGTTAATCCATATATGTAATACTTCTCAATTATTGGTTTC--TTATCATATGTGTTCAATG
TCAAACGTGGGTGTCATTTATTGGACCTTGCAGTGATTGCTCTGAATACAGGTTATGGCCA-TTCCTATATGTGTATAAT
TTCTGAAGATACACGAGCTTAGAAGCCATTGATG----------------------------------------------
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>chr1D_77
------------------------------------------------------------------------------AC
CGTCCGTCTCTATCTCCTCCTCCA--CTCCGGCAACCGGCCGGAGCCGTTCTCCGCTCCAGAAAAG-------GACAGGG
ACCGGAGCCGTTTTCCCAGTGGCGGAATCAGAACTCGTCAAC---------------------TC---------------
GCCGTCCGGGCGAACTGGGACCGCAGACCCGTCCGGACTCGGCTTAATTTCTTCTCTGGTCGGTAAGGAACCCTAGCTCG
CTTGCCTGTTTTTGATCCGTGAGAGGATACACCATCAAATCCATGGTTCTATTA--------GGTTTGTATATATTTTCT
TC-AGAGCGCGCGATCGATCTCCTCCCACCCGTAGGGGGGGTCGCCCGTTCGGTACCCG---------------------
-------------------ACTGAATCACCATAGTTCTCCCTCGTGCAGTTCTTTTCTCTTTCTTGGTTCATGTATACAT
ATGTCGGGATAAAACAGCATAATTCATAATCAGTGCA-----------------------GGATTTATACCGTTATAGG-
-AAAATT--TAATTGGAAAATCAGAACTGCTGTGATTAAACTTATTTTGAATGGGGCTGTTTGTGTCCGATTAATTTGCT
GCAAGCCCAGGCAATAAAGATGGGTTGCCTTAACGGAGGGACTGCGACAGTAGGATGTA---------------TCACGC
CAAGATCATAATGCTCTCAGACAATCCTCCTGGT--CATTAAAAAATAAGCTTATGCCGGATGAACTCTCGTGCGCGATA
CACCATACTAGGATTCATTCTGTGGAAGAGGTTATGGGTTAGGAAATGTTTCAGACAGAATAAGGTGCTGGAGTGAAGAA
GCTACAAAAGCACCTTTAGAAAAAGGACCGAGAACTACATTACAATTGCAATCTATAATGAAGATTTGGAAAC-AAAATT
CAGAGGGTTAAAAAGGACTGTGTTATGGGCTCCTTTCCTTGTGACTGATGTCCGACTGTGATCCCTTCTTATTATGCAGG
CATGGGGCTGTGGTCATTTCTTGAGGGTGTCCTGCTTATTGCTAATGCTTTGGCAATATTGAATGAAGACCGTTTTCTTA
ATCCCAGAGGATGGAGCTTCGCTGACGCTAGAGGCATGCATGGAGCAAACACTTTCAAAGGACAGATGATTGGCCTCATA
TACGCGGCTCAATACATGAGATTTCCATTGATCCTTCTTGATGGAATCACTATACTTGTGAAGTTCGTTACATTCTGACA
GTGGGAAGTGGTATGCTATACAG---TTCTTCCATTTGCTTCCTTGAAGATTGAGATATTTG------------GCTTTA
TGCAAATTTTCTCGTGCTTCACCCCTTCTTCCAATACTCTT-TTGTTGATGGTTGTATAGCTGTGCCTTTTATATGCACA
CTGTTGACATGTGCAGTTGTGCTCAGTTAGTAATTTATTGGTTGTCCG-------CAACACACTAGACGGTAGGTGCCTA
ACTGTGATCTTTCATTGTTCTTTTGTATGTACATGATGTATTTGCATTTGTCCATTGTAATTTTTTCTTGTTATTCCTGA
TAAATTTTTGCATGATGGGATTTTTATTATCAAGCAAATGGAACACTCATGTTTCCATTTTCATAGAAGTATCAGAGAAG
TTCTTATGTG-TATGATTTAGAGTGCCTCTCATAAACCAGACACTGTATAGTATTATATGGTTGGGTGTCACCACTTCTA
TGATAGAGTATATTTCATTAGTTATTATTG-----------------------GGTTTT--TTATCATATGTGTTCAATG
TCAAACGTGGGTTTCATTTATTGGACGTTGGAGTGATTGCTCTGAATAAAGGTTATGGCCA-TTCCTAT-TGTGTAGAAT
TTCTGAAGATACACGAGCTTAGAAGCCATTGATG----------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----------SSS-----S-SS----
---------------------------------------------------S------------------------S-S-
---------------S--------------S--S-------------------------------SSSSSSSSSSSSSSS
----S---------------S-----------------------------------------------------------
--S-----------S--------------S-----------------------SSSSSSSSS---------S-S-S--SS
-SS----S--S-S--------SSSS------S--S-S--SSS--S------S------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS--S------------------SS----S-S--S-S----SSS--SSSS-------------
-----SS-S-S-----S-------------SS---SSSSSSSSSSSSSSSSSSSSSSSSS-S---------S-----S--
----SSSSS-S-S---S------S---S-S-SS--S-----S-S--S--------S------------S------S----
----S---------------------SS-----S--------S-------S-SSSS--SSSSSSSSSSSSSSSS---S-S
----S-S---S--S---S-S------S----S-SSS--S----------S----SSSS----------------------
S------S--S-------S-S--SS----SS-S---SSSSSSSSS--SSS--SSSSS-S-S-SSS-SS-SS-SSS-SSS-
-------------------------------------------------------SS--S--S---------SS------
-------------------S-----------------------------------S------------------------
---------------------------------------------S--------------S--------------S---S
S----------------------------------S----S---------------------------------------
-----S---------------------------------------------------------------S----------
-------------S-----S---SSS-------------------------------------------SSS--------
----S-----------S------------------------S--------------------------------------
---S--------------------------------------------------------------------S-------
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--S---------------------------------------S---------------S---------------------
-------------------------------------S------------------------------S-----------
-----------------------------------------------------------SS-------------------
----------------------------S--------------------------------S------------------
--S-----------S-S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_944
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--------------------------------------------CATTGCTCCCGTGGTACAGT----------------
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>reverse_2357
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------------------------------------CAAACAGAGTTGGGGACGGA----------------
