>input_sequence_86238
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--ATGGACAAGATCTTGGCTTTCTCGATCCTGAGCTCCTCGCCGGCGGACATCGCGGGTGCCGGGTACGCCACACGCCTT
TCCTGGCGGAGCCGCAGCTGGCAGCAGCCGGAGAAAGCCACGGAGAAGCAGCGGCAGGAGGAGAAGGTCGACCAAGCCTC
TCGCCCAGAGATGAAGCGGGAGATGCGTTTCACGCCGGAGTTCGACGGCATCAACTGCTTCGAGTCCATGATCTCATTCT
GA------------------------------------------------------------------------------
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>chr7D_1_TraesCS7D01G067800
CTGGAACCGGGACTAAATGTGAGTCTTATGTCCGGGACTAAAAAGTGGTGGGCATTAGTCCCGATCGTTTTGTCCCGGTT
GCAGAACCGGGACTAAAGGCCCTCTGAAACCGGGAATGATGCCCAATTTTCAACTAGTGACTATCTAATTGTACAGTATT
CCATTGAACTTATATAGAGGGTTTCTGGAAATTTGGGAGGATGGGGGCCTCCACACTTTATCCTGTACATAGATGTTCCA
TCCAACGGTTGTGATGTGGTTGGAGCAGCCGGAGTACTCCATGATTGGGAGTACAGGATTTGCTCTCTGCTCGCCTGCGC
CAGGGCGACCCCCTCTGCATATGTTGTTTATTATTGTGATACTATGTGATTTATTTGGTTGATCTATATGAATGTTGCTT
TTTAGTTGGACATGTGTATGAGAAAAATTGTGTATATTTGCCGACCGACCGGCTGGACGGACCAAATATGTTGGCCAGTT
GGCCGCACTACCCTGACAAAACAGACATGGTCGTGTGTTCAAGTTGACCTAACAGGTGCTGCGAGGGTCTGTCTGAGTTT
GGTGGCGCCGTGCGGCGCGCGAGGCCGGCCACTCACGGCCCGTGTCCATCCCTCACACGACACCTCATGTCCAAGTCCAC
TCCTCACCCCAGTCAGTCATCTTCAATCTCCTTCAGTCTTTCCTGGCCATAAACAATAGCCAAGCCGCCAAGGACATCTC
ATATTGACCAACTCCCCGCGCGGCAGCGAGTCAGAGTCGCAACACGTCACCTCTCCTACTCAATAAACAATCAACCATGT
CTCATGTCGCTTTACTCCCGCCATATGCCAGACGGAGTCAGCGTCTTCTTTCCGCGTACATCAACTTTCTAAACAGTCG-
-----------------------------GCTTCCCCTCCCC----TTTCCGTGTATATAAACAGAGCACGAGCGGAGCC
ATGGGA--------AATCAAGCATCTACCAACGCACCACACCCACATAGGAAGAAACCGATCAGCGCTAGGCGCCACTGA
CCATGGACAAGATCTTGGCTTTCTCGATCCTGAGCTCCTCGCCGGCGGACATCGCGGGTGCCGGGTACGCCACACGCCTT
TCCTGGCGGAGCCGCAGCTGGCAGCAGCCGGAGAAAGCCACGGAGAAGCAGCGGCAGGAGGAGAAGGTCGACCAAGCCTC
TCGCCCAGAGATGAAGCGGGAGATGCGTTTCACGCCGGAGTTCGACGGCATCAACTGCTTCGAGTCCATGATCTCATTCT
GACCGGCTCGCCGGCTGTCTCGGTCGAGATTTTTCAGTTTTTTTTT--TTTGGCTATTTT------TTGGTTGCTTAATC
AG---TGAAGAGACATGTTATCCGTACAGAGCAAGACAATGAATCACTGATCGCAGATTATGGTGGTCTTGTCAGAT---
-------------------------------TAAAAAAGGGCGGGCTCCTTATGAAAACACCACTTCCTCCCAACTCTGA
ATGTGACACACTAAAAAGACCTGGAGTGGGGGCAGCAAATGGAAGTAAATGCACTTTCTCTTCCCTT---TGGTGATCTC
CGTGA-----GCAGTTGCTCG-----------------------------------------------------------
----------------------GTAGGCATTTGCTTCCTGCAAAAAGCAAAAAACGATGGTTCCCCCCTATGTTTGGCCT
TAAGTTTACCTTTTTATGAAAATAATAATAATTCAAACAAAGTTTGATCAATTAATACATTTGACAA-TAAAAGGAATAT
ATACAGAAAATATAATGTG-GGTTGGGTCAAAAGATTCGACTGCTAAGAAGACGATAATAAATGCGCAGAAGCACATATG
CATTCTACCAAGTGAAAAAGT--TGCAATGAA-AATTAAAATAATGAACAAATAAATAAATTCTCCTGCAGCCTTCACGT
CCGTGTGAATAATGATTTCCCTATATATACGTCTCTGCTTGCATGAGCAAAATGCAAGGTCTATTGAGTCATTGATACTA
CAATATTTATTCCTCCATCCATTATATTTGACATATTAGAGTACAAATAAGTGGTGAGTATGCTCACAGAGAACTGAATG
GATGCAGAGACATGTGGGAATAATAGACATCGGGAGAGTAACATTCCTTAATCGATGAATCGAGAATACTACGGGTCATC
TTCCTGTGCTTGGATCCATACGTAGTCGTTACTCTGTCATGCGGATCACAGGGAGCTTGTGCCTATTGGGTGCAACAGCT
GGGAGATGGTAGCATGTGATACTTACAATCGGTTTGGATGACGATCCAACAATAGGATAGATGTTCAGTCATTTTACCCT
ATTTTCGCCGGTAGTGCCACT
>chr7A_724
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---TTGACCGACTCCCCGCGCGGCAGCGAGTCAGAGTCGCAGCACGTCACCTCTCCTGCTCAATGAACAATCAACCACGT
CTCATGTGGCTTTGCTCCCGCCATATGCCAGACGGCTTCGGCGTCTGCCGTCCGCGTACGTCAATTTTCTGGGCTTCCAG
CTGCGTCACGCCTCCGTCTCCCCTGTTGTGCTTCCCCACCCCTGTGTTCCCGTCTATATAAACACAGCACGAGCAGAGCC
ATGGGA--------AAACAAGCATCTCTCAACGCACCACACCCACATAGGAAGAAACTGATCATCGCTAGGCGCCGCTGA
CCATGGACAAGATCTTGGCTTTCTCGATCCTGAGCTCCTCGCCGGCGGACATCACGGGTGCCGGGTACGCCACGCGCCTT
TCCTGGCGGAGCCGCAGCTGGCAGCAGCTGGAGAAAGCCACGGAGAAGCTGCGGCAGGAGGAGAAGGTCGACCAAGTCTC
TCCGCCACAGATAAAGCGGGAGGTGCGTTTCGCACCGGAGTTTGACGGCATCAACTGCTTCGAGTCCATGATCTCATTCT
GACCGGCTCGCCGGCTGTCTTGGGCGAGATTTTTGAG--TTTTTTT--TTTGGCTATTTTCTCTTTGTGGTTGCTTAATC
GGTGATGAAGAGACATGTAATATGTACAGGGCAAGACAATGAATTACTTATCGTAAATTATGATGATTTTTCATGCTGTT
AGTTTGAGCCATGATTCTCTGTCGTGTCAGATAAAAAACGGCGAGCTCCTTATAAAAACCGCACTTCCTCCCAACTCTGA
ATGTGACACACTTGAGCTTG-------------AGGAAGAGGAAGCAAATGCATTTTCTCTTCCCTT---TTTGTTACAT
GAGCTTGAGTGCACTTGCTAG-----------------------------------------------------------
----------------------GCAGTCATTTGCTTCCTGCAAAAG-------ACGATGGTTCCCCCCTATGTTTGCCCT
TAAGTTTACCTTTTTATCGAAATAATAATGATTTGAACAAAGTTTGATCGATTAATACATTTGACAAATAAAAGTTATAT
ATACAGAAAATATAATGTGCGGTGGGGTCAAAAGAATTAAATGCTAAGGAGACCATAATAAATGCGCACACGTACATATG
CATTCTAGCAAATGAAAAAAAAATGCTATGAA-AACTAAAACAATGAGCAAATAAATATGTTCTCCACCAGCCTTCACGT
--GTGTGAATAATGATTTCCCTCTGTATAAGTCTCTGCTAGTATGAGCAAATAGCAAGGTCTATTGATTCATCGACACTA
CAATATTTATTCCTCCTTCCATT-----TGACATATTAGATTACAAATAAGTGGTGAGTACGGTCACAGAGAA-------
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>chr4A_892
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-----------------------------------------C----TTCCCTTGTATGTAAACAAAGCACGAGCAAAGCC
ATGAGAAAGCAACTAAGCAAGCATCTATCAACGCACCGCTCCCACATTGGAAGAAACTGATCATCGCTAGGCGCCGCTGA
CCATGGACAAGATCTTGGCTTTCTCGATCCCGAGCTCGTCGCCGGCAGACATCGCAGGTGCCGGCTACGCCACACGCCTT
TCCTGGTGGAGCCGCAGCGGGCAGCAGCCAGAGAAAACCACGGAGAAGCAGCAGCAGGAGGAGAAGGTGGAGCATGTCTC
TCGGCCTTAGATGAAGCAGGAAGTGCGTTTGGCACCGGAGTTCGACGACATCAACTGCTTTGAGTCCATGGTCTCCGTCT
GACCGGCTCGCTGGCTGTCTTGGGCGAGATTTTTCAG---TTTTTT--TTTGGCTATTTTCCCTTTTTGGTTGCTTAATC
TGTGATGAAGAGACATGTTATATGCAGAGAGCAAGACAATGAATCACTGTTCATATATTATGGTAGTTTTTCATGATGTT
AATTTGAGCCGTGATTCTTTGTCTTGTCAGATTAAAATAGCCGAGCTCCTTCCT--------------TCCCAACTCTCA
ATGCGACACACTATAAAAAAGC----TGGGGGCAGCAAGTGGAAGCAAATGGATTTTCTCTTCCCTTTTGTTTGTTAAAA
GAGCTTGAGTGCACTTGCGGATCTCCATGAGCACTTGCTAGGTACTCCCTCTGTAAACAAATATAAGAACGTTTAGATCA
CTTATATTTGTTTACGGAGGGAGTAGTCATTTGCTTCCTGCAAAAA-------ACAATGGTCT--CCCTATGTTTGGCCT
TAAGTTTACCTTTTTATGAAAATAA---TGATTTAAACAACTTGTGGTCAATTAATACATTTGACGAAAAAAAGGTATAT
ATACGAAAAACATAATGTGAGGTGGGGTTAAAAGATTTGACTGCTAAGGAGACGATAATAAATGGGCAGAAGTACATATG
CATTCTTCCAAGTGAAAAA-AAATGCTATGAAGAAATAAAACAATGAACAAATAAATACATTCTCC--------------
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>chr4A_953
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----------------------------------ACCTCACCCACATAGAAAGAAACAGATCATCGCCAGGCGCTGCTGA
CCATGGACAAGATCCCGGCTTTCTCGATCCTGAGCTCGTC-CCGGCGGACATTGCGGGTGCCGGGTACGACACGTGCGTT
TCCTGGCGAAGCCGCAGCGGGCAGCAGCTGGAGAAAGCCACGGAGAAGCAGCGGCAGGATGAGAAGGTCGACCATGTGTC
TAGGCCAGAGATGAAGCAGGAGCTGCGTTTCGCACCGGAGTTCGACGGCGTCAACTGCTTCGAGTCCATGATCTCATTCT
GACCGGCTCCCCGGCTGTTTTGGGCCAGATTTTTCAG--TTGTTTCTGTGTAGTTGTTTTCTTTTTTTGGTTGCTTAATC
GGTGATGAAGAGACATGTAATATGTACAGTCCAAGACAATGAATTACGTATCATAGATTATGGT---------------T
AGATTGAGCCATGATTCTTTGTCTTGTCAGATAAAAAAGGGCGAGCTCCTTACAAAAACCCCACTTCCTCCAAACTCTGA
ATGCGACACACTACAAAGAACTGGAGTGGGGGCAGCACGTGGAAGCAAATGTATTTTCTCTTTTCTT---TTTGTTGCGT
GAG----------CTTGCGTG-----------------------------------------------------------
----------------------GCAGTCATTTGCTTCCTGCAAAAA-------ACGATGGTTCCCCCCTTTGTTTGGCCT
TAAGTTTACCTTTTT-----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS------S-------------------------------S---------------S------S------------S--
-------S-----S---------------------SS--S------S-SS---------S----S-----SSS-SSS-S-
-------------------------------------S----------S---------------S---------S-----
----------------S----------S-----------------------------S-----S-----------S----
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----------------------------------------------------------------------------S---
---S------------------S--------S-S----------------------------------------------
--------------------S--S-------------SS-----------------------------------------
S--------------------SS------------------------------S-------------S--SSSS------
-------------------------------------------S---------S-----S--------------------
-------------S-----S------------------S------S-------S-----------------SSSSSS-SS
SSSSS--------S-----S------------------------------------------------------------
--------------------------S-------------------SSSSSSS---------------------------
-----------------------------S---S-----------------------------------------S----
-----------------------S-------------S----------S-----------------------S-------
-------------------SS-----S--------S-----S----------------S-------SS------------
SS--------------------S-S----S---------S-S---------SS--------------S----S--S----
----------------S------SSSSS------------S-------------------S-S----------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS
>forward_127
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---------------------------AACCGGGAATGATGCCCAAT---------------------------------
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>reverse_2292
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---------------------------------------------------GGAGCTTGTGCCTATTGGGT---------
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