>input_sequence_86222
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-----------------------------------------------------------------ATGGAGCGCAAGAAC
TCGTTTGGCTCGTCGTGGGCGGACCAGTGGGACTACGGCAGCGACCCGGCCCCGCGGGCCGGCGGCAAGAAGCAGG----
--------GCGGCGTGGAGAAGACCAAGGCGGCCGCGGCCACGGGGCTGAAGAAGGTGAAGGAGGGCACCGCGCACGGCT
TCCAGTGGATCAAGGGCAAGGTGCAGAAGAAGAAGCAGGGCGGCGCCG---CCGGCGACGACGCGACTGCCGGGTATTGA
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>chr6B_1_TraesCS6B01G340400
TGGTATATTTTCATTTGAAGGACAATTGACATGTGAAATTTAATGAAGTTTGACTTAGGATAAAATTAGAAGTACAGTTA
TTTTGGAATGGATAGAGCAACCCTGAACGATTCATACTATCACTAAAGTTCTTGGTTCAACTGAAAAAAATAAACAAAGC
TTTTGGTTCACAA-AAGAAAGAAAAAACAAGAAGGGAGATCCTGCCCAGAAGATGACCGGCACTCCTAGATGCTCACTGG
TTGATGAACCGTAAACTCCTTCGATAACTTGGTCAAGCCAATCTCCTCCCAAAA-AAGTAATCCCACGACTCCAAATGGG
CCAATTCGAAGCTTATAATTATAA---ACGCCACGCACTTGCTGCGGTTTAACTCCGGGA---CAAGCAAGCCTCTCTTG
AACAGATCAAATCAGGCGACCCGTTCACCGGCCCGTCCGCTGAAACAAAAGGGCAGGTCAC-TCTCACGACACCGGTCTT
GCACGCACGCACGCGACCAGGCTGTAATTTCGTCCGGCAGTACTAATAACCAACACATTTTTTGGTTGTTTGAGACAAAA
TAACCAACACATTTCATTCAGCACCTGTGACCGCGCACTGTTT--GACCGACACGCGGGCCACAAGCCCACAATGATCGG
CGCAGGCCCACCGGTCGGCGTCTCCGCGGCTGGAAGCTTCGGACTCGCAGCCA-GGCCGTATGTATGGACGTGGACCGCA
GCCCCCGTCGTGAGTGACGCCGGTCAAAACTGGCATGCAGCTGCGTCCGCGCCGCGGGAAGGAGAACCAACCAAGCAGCC
AA----CGAGACCACCGCGTCCCGGTCCAA------GACGTATCCGGCCTC--CTCCGCGTTCGTTTCCTCCCACGCGTG
TCTTCTGGAAGGACCATCCCGATCCCCTCCCGTTGATTGGTTGCCCGAAGCGGGGCCGCGCATGCCCCTATAAAACCCCG
CCATTCTCGCCCTGACTGACCGCAGGAGAAGCTTT-TGTTCGTCTCTTGATTGAGATCGTTCTTGATGGAGCGCAAGAAC
TCGTTTGGCTCGTCGTGGGCGGACCAGTGGGACTACGGCAGCGACCCGGCCCCGCGGGCCGGCGGCAAGAAGCAGG----
--------GCGGCGTGGAGAAGACCAAGGCGGCCGCGGCCACGGGGCTGAAGAAGGTGAAGGAGGGCACCGCGCACGGCT
TCCAGTGGATCAAGGGCAAGGTGCAGAAGAAGAAGCAGGGCGGCGCCG---CCGGCGACGACGCGACTGCCGGGTATTGA
TTAGCCAGGCCCCGTTCCCGGCGGGCGGATGGAAATGGATGCATGGATGTCCGGTCGATTGACTGGGCGATCTCTTGTTT
CCT---GTCGTTTAAATGGTTCTGTACATACAGGTTTGCCG----TTTGATTCAGGGTTGACACCACCACGTAGATCAT-
--CTAGCG-TTCAGATCTCTGCTTATTGATTGGTTCTTTGTTC-TTCCTCTTGTCCTGTTCTCGATTGATCCGATGAAAT
TTGCCGCTGATTGG-TTCGTTCACTGACGCTCGCCGGCAGTTGCCTTTGTTTGTTCGGGAACGCGGCGCGTGATCCTCAG
ATTTGCCGACTGTCACCTCCGGCAAATTTCGGTTCA------------GTTTCGTTATCTGAATTCTGAGTACAGACTAC
AAAGTCTAGTGGAATGGTCA----CAGTATATGGGAGTTTGCATCTAGTACAGTTGCATAGTTGCATTTCGTCCTTCACA
GATGAAAT-GCACTCATTTTTCATCTACTTCTGTTTCAACACAAAGATAATTAACACTGAGAAAGTGATGTGGAACTTTC
AATTCTGTGGGCAATTCAAACGGCACTGTATCAGCATAGTAGCACTGTTTCAGCTTTATATAAACGTACTTGCTCTAAGA
TTTCAGAAATGGCATGTCAAGGACAAAGTATCCTTGCTCTGAGATTTCAGAAATGGCATGTCAAGGACAAAGTATCAACC
TCCGTAGAGTTGCAGACATTTGTTTTTTTTTTTAAATTTTAGTTGCAGACATTGTTAGAGATGGTTGGATTTAGAAGAAA
TGTCTAAAATAGTTGCATACTTG-CCCTCTGTATGGAGCATTACTCAAAAGTTCAACTCAGAAGAATAAACTCAGTGGCC
ATTCAACTACTGAGATGGTGAAGGTC------------AGTGCAATCCGAACGGTAAAGGATTTAGAATGCATATGCGCT
AGATAACAAAGATGCTAAAAGCACTTGATGCTCACAGAAAGCCCATAGAAGCAACCAATTTAATTAAAGTTTAAAGAGAA
AAG
>chr6A_118
TATCAATT------------------------------------------------------------------------
---------------------------------------------AAGGTCTTGGTTCAGCTAAAATAAATAAATAAAGC
TCTTGATTTGCAATAAGAAAAAAAGAGCAAGAAGGGAGATCCTGTCCAGAAGACGACCGGCACTCCTAGATGCTCACTGG
TCGATGAACCTTAAACTCCTTGGATAACTTGGTCAACCCGATCTCCTCCCAAAAAAACTAATCCCGCGACTCCAAATGGG
CCAATTCGAAGCTTAATTCTAAACGCCACGACAGGCACTTGCTGCCGTGACAAGCCAAACAAGCAAGCAAGCCTCTCTTG
AACGGATCAAATCAGGCGACCGGTTCATCCGCCCGTCCGCTAAAACAAAGGGGAGGTCACGGTCTCACGACATCGGTCTT
GCACGCACGCACGCGACCCGGCTGTAATTTCGTCCGACAGTAACAATAACCAACATTTCAATCAGTTAAA----------
-----AAAACATTTCATTCAGCAGAACCAACATTTCAA------------------------------------------
--------------------TCTCCGCGGCTGGAAGCTTCGGGCTCGCAGCCCGGGCCGTATGGATGGACGTGGACCGCA
GCCCCCGTCGTGAGCGACGCCGGTCAAAACTGGCATGCA---------GCGCCGCGGGAAGGAGAGCCAACCAAGCAGCC
AGCCAGCGAGACCACCGCGTCCCGGTCCCGATCCCGGACGTATCCGGCCATGACTACGCGTACGTTTCCTCCCACGCGTG
CCTTCTGGAAGGGA-----CGATCCCGTCCCGTTGATTGGTTGCCCGAAGCGGGGCCGCGCATGCCCCTATAAAGCCCCG
CCATTCTCGCCCCGACTGACCGCAGGAGAAGCTTTTTGTTCGTCTCTTGATCGAGATCGTCTTTGATGGAGCGCAAGAAC
TCGTTCGGCTCGTCGTGGGCGGACCAGTGGGACTACGGCAGCGACCCGGCCCCGCGGGCCGGCGGGAAGAAGCAGG----
--------GCGGCGTGGAGAAGACCAAGGCGGCCGCGGCCACGGGGCTGAAGAAGGTGAAGGAGGGCACCGCGCACGGCT
TCCAGTGGATCAAGGGCAAGGTGCAGAAGAAGAAGCAGGGCGCCGCCGGCGCCGGCGACGACGCGGCCGCCGGGTATTAG
GCAGCCAGGCTCGGCTGATCCCTGGAGGATGG-AATGGATGGATGGAACGCCGATCGATCGATCGGCCGATCTGTTGGTT
TCTTGCGTCGTTTAATTGGTTGTGTACATATAGTTTTTGCCGTTCTTCGATTCAGGCTTTGCACCACCACGTAGTAGATC
AGCGATCGTTTTAGATCTCTGCTTATTGATTGGTTCTTTCTTC-TTCCTTGTGTCCTGTTCTCGATCGATCCGATGAAAT
TTGCTGCTGATTAGTTTCGTCCACTCACGCTCGCGAGCAGATGCCTGATTGGT--------------GCGTGATCTTCAG
GTTTGCGGGCTGCCACCTCCGGCAAATTTCAGTTCAACGTTTTTTTTGGTTTTGTTATCTGAATTCTGAGTAGATGCTGC
AGAGCCATGTGATGGTGGAAAGGTCAGTATATGGGAGTTTGCATCTAGTACAGTTGCATAGTTCCATTTCGTCCTTCACA
GATGAAAT-GACCTCATTTTTCGTCCACTTCTGTTTCAACACAAAGATATTTAACACTGAGAAACTGATGTGGAAATTTC
ATTTCTGTGGGCAATTCAAACGGTACTGTATCAGCATAGTAGCACGGTTTCAGCTTTACATAAACGTACTTGCTCTAAGA
TTTCAGAAATGGCTTGTCA--------------------------------------------AGGACAAAGTACCAAGC
TCCGTAGAGCTGCAGACATTT---------------------------------TTAGAGATGGTGGGATTCAGAAGAAA
TGTCTAAAATAGTTGCATGCTTGTCCCTCTATATGGAACATTACTCGAAAGTTCAACTCAGAAGAATAAACCCAGTGACC
ATTCAACTACTGAGATGGTGAACGTCAGTGAGTCTGTGAGTGCAATCCGAACGGTAAAGGATTTAGAATGCATGTGCACT
AGATAACAAAGATGCTAAAAGCACTTGATGCTCATAGAAAGCCCATATGAGCAACCAATTTAATTAAAGTTTAAAGAGAA
A--
>chr6D_550
AATAACC-------------------------------------------------------------------------
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-------AACATTTCATTCGGCAGAACCAGCGGAACTCACCTGTAGACCGACACGCGGGCCACGAC--------GATCTC
CGCAGGCCCACCGGTCGGCGTCTCCACGTCTGGAAGCTTCGGACACGCAGCCCAGGTCGCATGGA------TGGACCGCA
GCCCCCGTCGTGAGTGACGCCGGTCAAAGCTGGCATGCA---------GCGCCGCGGGAAGGAGAACCAACCAAGCAGCC
AA----CGAAACCACCGCGTCCCGTTCCCG------GACGTATCCGGACAC--CTCCGCGTACGTTTCCTCCCACGCGTG
TCTTCTGGAAGATCGCCTC---------CCCGTTGATTGGTTGCCCGAAGCGGAGCCGCGCATGCCGCTATAAAACCCCG
CCATTCTCGCCCCGACTGACCGCAGGAGAAGCTTT-TGTTCGTCTCTTGATTGAGATCGTTCTTGATGGAGCGCAAGAAC
TCGTTCGGCTCGTCGTGGGCGGACCAGTGGGACTACGGCAGCGACCCGGCCCCGCGGGCCGGCGGCAAGAAGCAGGGCGG
CGTCGGCGGCGGCGTGGAGAAGACCAAGGCGGCCGCGGCCACGGGGCTGAAGAAGGTGAAGGAGGGCACCGCGCACGGCT
TCCAGTGGATCAAGGGCAAGGTCCAGAAGAAGAAGCAGGGCGCCACCGCCGCCGGCGACGACGTGGCCGCCGGGTATTAG
GCAGCCAGGCCCGGCTGATCCCTGGAGGATGG-AA-------------CGCCGATCGATCGATTGGCCGATCTGTTGGTT
TCTTGCGTCCTTCAATTGGTTGTGTACATATAGTTTTAACG----TCTGATTCAGGGTTGGCACCGCCATGTAGACCAT-
--CGATCGTTTTAGATCTCTACTTATTGATTGATTCTTTCTTCTTTCTTTGTGTCCTGTTCTCGATTGATCCGATGAA-T
TTGCTGCTGATTAG-TTCGTCCACTGACGCTCACGAGCAGATGCCTGATTGGT--------------GCGTGATCTTCAG
GTTTGCGGGCTGCCACCTCCGGCAAATTTCAGTTCAACGTTTTTTT-GGTTTTGTTATCTGAATTCTGAGTAGATACTGC
AGAGTCATGTGATGGTGGAAAGGTCAGTATATGGGAGTTTGCACGTAGTACAGTTGCATAGTTCCATTTCGTCCTTCACA
GATGAAACGGACCTCACTTTTCGTCTAATTCTGTTTCAACACAAAGATAATTAACACTGAGAAAGTGATGTGGATATTTC
AGTTCTGCGGGCAATTCAAACGGTACTGTATCAGCATAGTAGCACGGTTTCAGCTTTACATAAACGTACTTGCTCTAAGA
TTTCAGAAATGGCTTGTCA--------------------------------------------AGGACAAAGTACCAAGC
TCCGTAGAGTTGCAGACATTG---------------------------------TTAGAGATGGTTGGATTCAGAAGAAA
TGTCTAGAATAGTTGCATAGTTG-CCCTCTATATGGAGCATTACTCAAAAGTTCAACTCAGAAGAATAAACTCGGTGACC
ATTCAACTACTGAAATGGTGAACGTCAGTGAGT--------GCAATCCTAACGGTAAAGGATTTAGAATGCATGTGCACT
AGATAACAAAGATGCTAAAAGCACTTGATGCTCATAGAAAGCCCATAGGAGCAACCAATTTAATAAAAGTTTAAAGAGAA
AAG
>SNPs
-SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------S--S---S-------S-----
-S---S--SS----------S---S-S-----------------S--------S--------------------------
-S--------S----------S--------------S--S-----------------S-------S--------------
---------------SSSS--S-S------S--S-----------S--SSS-SS--SSSS--------------------
---S-----------------S-----S-S-----------S-------S---SS-SSSSS-----------S-------
------------------S-----------------S-----SS-----------SS-SSS-SS---SSSSSSSSSSSSS
SSSSS--S---------------SSSSSS--S-SS---SSS-S--------------------S-SSSSSSSSS----SS
----------------------------------------------------S----------S----------------
---------------------------------------SSSSSSSSS--------------------------------
----------------------------SS-------------------S-----------S------------------
------------S-SSSS--------S-----------------------------------------------------
------------S-------------------------------------------------------------------
-----S--------------------------------------------------------------------------
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------------------------------------------S----------------------S-S----------SS
SS----------S-S-SSSSS-S--S------S--------S-----SSS---S-----S--S---S------S---S--
S--------------S-----S--------S--S---SS---------------------S--------------S----
---S-S-----S---------------------------S---------SS-----------------------------
----S-------S-------S-------------SS----S-----SSS-SSSSSSSSSSSSSSSSS--------S----
S-----S-S---S-----------------S---------------------S-------------------S-S---S-
-S----SS---SSSSS-SS--------------------------------------------S----------------
----------SS----------S----------------------------------------------------S----
-S---------------------S---------------------S------------S---------------------
-------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S---S-
---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S--------
------------------------------S----------------------------------------------S--
----------------------S--------------------------------------------------S---S--
----------------------------------S-------------S-------------------------------
---
>forward_374
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----------------------------------GCACTTGCTGCGGTTTAACT--------------------------
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>reverse_1334
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-----------------------------------------------------GTCGATTGACTGGGCGATCT-------
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