>input_sequence_86220
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ATGGCGATGGCTTCCAAGATGGTCGGCGCCCTCTTGCTGGTCCTCCTGCTGGCGCTCACCCAGAGCGACGCCCAGGTGTT
GCCGACTCCATGCTGCAACCTCAAATGTTGTGGGTTTGATTGCTGCGGGCCCCCGGTCACAGCCGCGGCGCCCATTTCGC
CATTGTCCACTGCTCCGGAAGCAGGACG---GGCCGGCCCGGTTTCGCAGCGTGTGCCACGCAAGGTTTTCCCCGGAAAC
TAG-----------------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G067900
TAGTATAGTCACAAATAAGACATCACTGGTGAAGTACCACA--ACATGAACCTGATGCAGCGATACATTGTTGTGCAATC
CAC-AAACTCTTGTCCC---AGCCCTATCACACTATCCTGATTGTTCCACAAACCAACACAAATCAGAAAATAAATTCTG
GAGATCAGAAACTCGAGTGCCATAA-CAAGAAAAAATCACCCGAGCAATTTTTAGCAAATCCCTT---------------
-------------------------------GACCACATTTGAATTAGGACTTATCGGGTGATTAACTTTGTTTTTTTTT
--CTTGAGAAACACAATACAGACATAGACACTCACATGTATGCATGTACACTTATATATAACCCTATAAAGACACACAT-
-CACTGGCACTTCGGTGCATAGGTGTCAAATATGTGGTTTGATCCTTGGTGTGCTAGG-GTACAACCA---TCCTAACCA
TCCAACCACGAGATGGTTCTCAACATTGGCATAATTATGCGTGGGATTACAAACTGGAAAAA-CATGTGTGCTCTGCCTT
GGTCTAATCAAACGGCTCGCTAGCCTAATAAATCTAG-ATAGAGGGAAAACAACGATCCGATCCTATATCCATCTTAAAG
AATATCTTTATCCATGAGGTTTCATCTTGATGATGATGATGATATAGAGCATGTGCGTTATCTCAAAAAAA--TCT-ATA
GCATGTGATATTTTATCTTTAATTTCCTACTACCAAAGATTTACCATCATGGATAATTTCCTAATTAGCATC--------
AGCCACCTTTAGAATCCAATAATCTTATTCTAAAAAT--TTGGGAGCCTGTCTTAAAAATCATCCTTATCCGGAATCATT
TGGACG------ATCATGATTTGACCACGATTTTATATGGTATGTTGTTATTGCTCTAATTGAATTCCTTCCATCCATGT
TATT-----------------CGGTAAAC-----------GGCTATAAATAGGAGGAAC----C-AAGACATCCATACTA
CACT---CGTCTCTCGCATCACAAAGCTGTTGGCCCTGTAGCACAAGTGAGTTA--CACAAAACCAGCTGCAAAGGCTCG
ATGGCGATGGCTTCCAAGATGGTCGGCGCCCTCTTGCTGGTCCTCCTGCTGGCGCTCACCCAGAGCGACGCCCAGGTGTT
GCCGACTCCATGCTGCAACCTCAAATGTTGTGGGTTTGATTGCTGCGGGCCCCCGGTCACAGCCGCGGCGCCCATTTCGC
CATTGTCCACTGCTCCGGAAGCAGGACG---GGCCGGCCCGGTTTCGCAGCGTGTGCCACGCAAGGTTTTCCCCGGAAAC
TAGCGATGTTCAGATGCATGTAGCGATGCCCCCCGTGTCATACGATTCCATAGCAAGTGTGCTACCAGCACCTAGCAAGT
TTCGCT-GTGTGTTCCGCATTATTTTTAGCTTGTATTCCTGATTTGTTCTGTTCCATTGAAACAACAATAATATGAGTTT
ATATCCTGCAGTAGCATTCCAAATTCTGGAGCTATAAAGTGTCTGCAATGATAAACCATGTTGGGCACACAAATAATTCA
AACATCCTTCAGAAGAACAGAACACATAATCCTCCAACTAAATCTGCCGAACATGAATCAGCTATAGCTGCTCTAGTCTG
GATCAATCCCTCATCTCGGCTGCCTTCTTGTCTCCCAGAACAATATTGTTTCCTAAAAGG-AGTCATACATGTTTCCTTT
AGGTGGATAAAATTCATGGCCGGTTTAGCAATTGCGCCTATTAAAAATGAGATATTTTACGGTACATCATACTATTCAAT
AGTGTGGGTAGTATTTAGATGATCTAACGGTTAACATGGATCGGTAAAATTTAAACTCTAGGATATATTGGTAATTCTAT
ATTAAAGATAGATATCTTTTCTCAATTTAATCCTGATTGATCTCACAAGTTAACTAATCTCATCCCATCCACACCGTCTC
GTTCGTCCGCTACTCTCGATGCCACGCCGCTACTGCTCCCTTGGGCTGCCGGAGTGGCTTTGCGGGAGAATCACCATGGC
GACGAGGTCATGCCGGCGTGGTTGAAACGCAAGACGCTGCCCTGTGCTCACATGCCAGGAGCATCGGGCACCTCATGTGC
GGAGGCTGGTCGTCCTTGAGGTGCTCGCAGGCCAGGGGCATCGGACACCTCCTGTCGAGGTTGCTCGTTGTCCCGGAGGT
GTCCGGCGTGGACTAGTTAAAGGAGCAGAGGTGTGACGAGGAGACCGGCGTTGGAGGAGAACCTAATTTACCCACGTTCC
CATCTTCGATCCCACCCCTGCAGGCTGCAGAGCTCTGTCGTCGCC
>chr6B_1
TAGTATTGTCACAAATAAGACATCACTGATGAAGTACCACAACA--TGAACCTGATGCGGCGATACATTGCTGTGCAATC
CAC-AAACTCTTGTCGTTTCAGTCCTGTCACACTGTCCTGATTGTTCCACAAACCAACACAAATCAGAGAATAAACTCTG
GAAATCAGAAACACGAGTGCCATAACCAAAAAAAAATCACCCGAGCAATATTTAGCAAATCCCTTCGGTACCATTATTTA
GATTGGAGCTTTTCAACTCCATTTTGAGATTGACCACATTTAAATTTGGACTTATCAGGTGATTAACTTTGTTTTTTTTT
TGCTTGAGAAACACAATGCAGACATAGACACTCACATATATGCATGTACAAT----TATAACCCTATAAAGACACACAC-
-CACTGGCACTTGGGCACATAGGTGTCAAACATGTAGTTTGATCCATGGTGTGCTAGGGGTACAACCATCCGCCTAATCA
TCCAACCACAAAATGATTCTCGGTATTGGCATAATTATGGGTGGGTTTGCAAACTGAAAAAAAAAAGCATGCTCTACCTT
TGTCTAATCAAACAGCTCGCCAGCCAAATAAATCTGGAATGGAGGGATAACAACGGTCGATCC---TATCC---------
---ATCTTTATCCATGAGGTTTCATCC------TGATGATGATATAGAGCATGTGGGTAATCTCAAAAAAAAATCT-ATA
GCATGTGAGATTTTATCTTTAATGTCCTGCTACCAAAGATTTGCCATCGTGGATAATTTCCTAATTAGCATCCTTATATT
AGCCACCTTTGGAATCCAATAATCTTATTCT--AAAT--TTGGGAGCCTGTCTTAAAACTCATCCTTATCTTTGAGGAGT
CATCCGGATGATATCATGATTTGACCACGATTTTATATGGCACGTTGTTAATGCTCCAATTGAATTCCTTCCATCTGCGT
TATT-----------------CGGGAAACCTGCTGCTCAGGACTACAAATAGGAGGGAGCGAGC-AAGACATCCATACCA
CACT---CGTTTCTCGCATCACAAGGTCGTTGGCCCCGTAGCACAAGCGAGTTCATCACAAAACCAGCTGCAAAGGCTCG
ACGGCGATGGCTTCCAAGATGGTCGGCGCCCTCTTGCTGGTCCTCCTGCTGGCGCTCAACCAGAGCGACGCCCAGGTGTT
GCCGACCCCCTGCTGCAACCTCAAGTGCTGTGGGTACGATTGCTGCGGGCCCCCGGTCACAGCCACGGCACCCATTTCGC
CATTCTCCGCCGCCCCCGAAGCAGGACC---GGCCGGCCCGGTTTCGCAGCGCGTGCTCCGCAAGGTCTTCCCCGGAAAC
TAGCGATGTTCAGATGCATGTAGCGATGCCCCCCGTGACGTATGATTCCATTGCAAGTGTGCTACTGGCACCTAGCTAGT
TTCGCT-GGTATTACGT-ATTATTTTTAGCTTGTATTCCTGATTTGTTCTGTTCCATCGAAACAGCAAT-ATAGGAGTTT
ATATCCTGCAGTAGCATTCCAA-TTCTACAGCTATAATGTGTGTGCAATGATAAACCATGTTCGAAACACAAATAATCCA
CCCATCCTTCAGAAGAACAGAACGCATAATCCTCCAATTAAATCTGCCGAACCTGAATCAGCTATAGCTGCTCTAGTCTG
GATCAGTCCTTCATCTCGGCTGCCTTCTCGTCTCCCAGAACAATATTGTTTCCTAAAAAGTAGTCATACATGTTCCCTTT
AGGTGGACAAAATTCATAACCGGTTTAGCAACTGCGCCTACTAAAAAT--------------------------------
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>chr6B_1
TAGTATAGTCACAAATAAGACATCACTGATGAAGTACCACAACACATGAACCTAATGCAGCGATACATTGTTGTGAAATC
CAC-AAACTCTTGTCCC---AGTCCCGTGACACTGTCCTGATTGTTCCACAAACCAACACAAATCAGAAAATAAATTCTA
GAAATCAGAAACTTGAGTGCCATAACCAAAAAAAA--CACCCGAGCAATATTTAGCAAATCCCTTTGGTACCATTATTTA
TATTAGAGCTTTTCAATTCCATTTTGAGATTGACCACGTTTAAATTTGGAATTATCAAGTGATTAACTTTGTTTTTTTTC
--CTTCAGAAACACAATGCACACATAGACACTCACATATATGAATGTACAAT----TATAACCCTATAAAGACACACGC-
-CACTTGCACTTGGGCAAATAGATGTCAATCATGTAGTTTGATCCATGGTGTGCTAGGGGTACAACCATCCGCCTAATCA
TCCAACCACAAAATGATTCTCAGTATTGACATAATTATGGGTGGGTTTGCAAACTGAAAAAAAAATGCATGCTCTACCTT
TGTCTAATCAAACGGCTCGCCAGCCAAATAAATCTCGAATGGAGGGATAACAACGTTCGATCC---TATCC---------
---ATCTTTATCCATGAGGTTTCATCC------TGATGATGATATAGAGCATGTGCGTAATCTCAAAAAAAAAACTTATA
GCATGTGAGATTTTATCTTTAATGTCCTGCTACCAAATATTTGCCATCGTGGATAATTTCCTAATTAGCATCCTTATATT
AGCCACCTTTGGAAACCAATAATCTTATTCT--AAAAACTTGGGAGCTTGTCTTAAAACTCATCCTTATCTTTGAGGAGT
CATCCGGATGATATCATGATTTGACCACGATTTTATATGGCACCTTGTTAATGCTCCAATTGAATTCCTTCCATCTGCGT
TATT-----------------CGGGAAAACTGCTGCTCAGGACTATAAATAGGAGGGAA----CAAAGACATCCATACCA
CACT---CGCTTTTCCCATCACAAGGTTGTTGGCCCCGTAGCACAAGGGAATTCATCACAAAACCAGCTGCAAAGGCTCG
ACGGCGATGACTTCCAAGATGGTCGGCGCCCTCTTGCTGGTCCTCCTGCTGGCGCTCACACAGAGCGACGCCCAGGTGTT
GCCGACTCCCTGCTGCAACCTCAAGTGCTGTGGGTACGATTGCTGCGGGCCCCCGGTCACAGCCGCGGCGCCCATTTCGT
CATTGTCCGCCGCCCCGGAAGCAGGACC---GGCCGGCCCGGTTTCGCAGCGCGTGCCCCGCAAGGTCTTCCCCTGAAAC
TAGCGATATCCATATGAATGTAGCGATGCCCCCCGTGGCATATGATTCCATTGCAAGTGTGCTACCGGCACCTAGCTAGT
TTCGCTGGGTATTACGT-ATTATTTTTAGCTTGTATTCATGATTTGTTCTGTTCCATCGAAACAGCAAT-ATAGGAGTTT
ATATCCTGCAGTAGCATTCCAAATTCTGCAGCTATAAAGTGTGTGCAATGATAAACCATATTCGGAACACAAATAATTCA
AACATCCTTCAAAAGAACAGAACACGTAATCCTCCAATTAAATCTGCCGAACCTGAATCAGCTATAGCTGCTCTAGTCTC
GATCAGTCCCTCATCTCGGCTGCCTTCTCGTCTCCCATAACAATATTGTTTCCTAAAAAGTAGTCATACATGTTCCCTTT
AGGTGGACAAAATTCATGGCCGGTTTAGCAACTGCGCCTACTAAAAAT--------------------------------
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>chr6D_1
TAGTATAGTAACAAATAAGACATCAGTGATGAAGTACCAAA--ACATGAACCTGATGCAGAGATACATTGTTGTGCAATC
CGCAAAACTCTTGTCCT---AGCCCTGTCACACTGTCCTT----TTCCACAAACCAACACAAATCAGAAAATAAATTCTA
GAGATCAGAAACTCGAGTGCCATAACCAAAAAAA--TCACCCGAGCAATTTTTAGAAAATCCCT----------------
------------------------------TGAGCACATTTAAATTTGGACTTATCGGGTGATTAACTTTTC----TTTT
--CTTGAGAAACGCAATGCAGACATAGACACTCACATATATGTGTGTACACT----TATAACCCTATAAAGACACACACA
CCACTGGCACTTCGGCACATAC-TGTCAAACATGTGGTTTGATCCCTGGTGTGTTAGAAGGACAACTATCCTCTTAACCA
TCCAACTACAAGATGGTTCTCAAGACTGGTATAATAATGGATGGGTTTACAGAAAAT--AAA-AATGCGTGCTCTGCCTT
GGTCTAATCAAACGGCTCGCTAGCCTAATAAATCTAG-ATGGAGGGATAAC-------CGATCCTATATCC---------
---ATCTTAAAGAAT-AGGTTTCATCC------TGATGATGATATAGAGCATGTGCGTAATCTAAAAAAA----------
-CATGTGAGATTTTATCTTTAATGTCATGCTACCAAAGATTTACCATCATGGGTAATTTCCTAATTAGCTTCCTTATATT
AGCCACCTTTGGAATCCAATAATCTTATTCT--AAAAC-TTTGGAGCCTGTCTTAAAAATCATCCTTATCCCCGAGGGGT
CATCTGGATGATATCACGATTTGACCACGATTTTATATGGCACGTTGTTAATGCTCCAATTGAATTCCTTAAATCTACGT
TATTCGGGAAAGAGGCCTCTTCGGGAAACCTGCTGCTCAAGGCTATAAATAGGAGGGAA----C-AAGACATCCATACCA
CCACACCCGTCTCTCGCATCACAAAGTTGTTGGCCCCGTAGCACAAGAGAGTTCGTCACAAAACCAGCTGCAAAGGCTCG
ATGGCCATGGCTTCCAAGATGGTGGGCGCCCTCTTGCTGGCCCTCCTGCTGGCGCTCACCCACAGCGACGCCCAGGTGTT
GCCGACTCCCTGCTGCAACATCAAATGCTGTGGGTACAATTGCTGCGGCCCCCCGGTCACAGCCGCCGCGCCCATTTCGC
CATTCTCCGCCGCCCCGGAAGCAGGACCAGCGGGCGGCCCAGTTTCGCAGCGCGTGCCCCGCAAGGTCTTCCCCGGAAAC
TAGCGATGTTCAGATGCATGTAGCGATGCCCCCCGTGTCATATGATTCCATTGCAAGTGTGCTACCGGCACCTAGCTAGT
TTCGCTGGGTATTACGT-ATTATTTTTAGCTTGTATTCATGATTTGTTCTGTTCCATCGAAACA----------------
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>SNPs
----------------------------S---------------------------------------------------
--------------------------S-------S---------------------------------------------
-----------------------------S--------------------------------------------------
-----------------------------------------S----S---------------------------------
-----------------S-------------------S--------------SSSS----------------------S-
---------------SS-------------S--------------S----------------------------------
---------S-------------S---------------S-----S----------S------S---S------------
----------------------------------------S------S-------S---------------SSSSSSSSS
SSS-----------------------SSSSSSS-------------------------S---------------------
--------S--------------S----S---------------------------------------------------
----------S--------------------SS--------------------------------------SSS-SS-S-
SSSS------------------------------------S-S-------S-----S------------------S-S--
------------------------S-------------------------------S-S-------------------S-
--------------------------S---------S----------S-----S--------------------------
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---------S-----------------S-------SS-------------------------------------------
--------S-S--S-------------S------------------------S-----S--------S------------
------------------------------------------S--------S--------------S---------S---
--------SSSS-S-SSS---------------------------------------S------S----S---S------
----------------------------S-------------S-------------------S--S--------------
-------------------------------------S--------------S---------------------------
-----S----------------------S-----------------------------S---------------S-----
-------S-----------------------S--------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1077
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-----------------ATCACAAAGCTGTTGGCCCT-------------------------------------------
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>reverse_1998
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GTTCGTCCGCTACTCTC---------------------------------------------------------------
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