>input_sequence_86217
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------------------------------------------------------------------ATGCTTGACACGGC
GGCCCGGATCATGGCGCGCTTCTACGCGCACTGCCCCCACACGTCGTGTCTCTACTACAGGCCCCCGCCGCGGACCACCG
CCACAAGCAATAGTGGCAAGAGCGGGAACGCGAGGAGCTCTGCCAGCGAGGCCGAGGTATCGTCAGCGAGGAGGAATCCG
CAACAGGAGCAGGCGGTCAGGGTGGTGCTCGATGCCACGGAGATCATCCTCAGCGGGGGCGTGTAG--------------
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>chr5D_1_TraesCS5D01G451400
TATTCTTTCGATGCCCGCTTGCCAGATATATGTGGAATGTGGTCAGTTATTGCACTGGGCTCCGATGTGATTTCAGTGAT
ATGGACACATGTATACATAGTTGGCTAGAGGGTTTTGGGACAGAGAATAAGAA-AAAAAA------TTGTTGGGGTGGCA
GCTCTGATATGGAGTATTTGGAGAGCTAGAAACTTAGCATGTTTCCAACACGTGTGGCCTGCTGATCCGAGTGTTTTGAT
GTTCAGAATGTCGCACTGGATTAATCATTGGAGTTTTTTGCAGGTGAGGGAGGACGCAAAAGTGGAGTTGCAACGGGGCG
TAAAGCTGCTGGATCGAGTCGCCAGTGAAGTATTTCAATCAAGACGAGGGTGGGCGACCTGGGTGCCAAGGCTGGAGAAC
TGCTG-AGGATGAGATTTTGGAAG------------------------------------------TTTGTAATCCTAGA
ATGGAGAATGTGATGGGCTTGATTGCTCTCAT-GACAGCTCGTCTTTG------TGTTGTAACCTAGA-TTCTT------
--TTATGTAATAAGATAGACATGGAAAAAGGGG--GTAGGTTTTCTT--------TCTCTTCGCCTATGCACTGTGTTG-
-AATGGTGCATAGGGCCAGAT-GGAGGTGGTATGCGCTCTCGTAGT---G------------------------------
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-------------------------------------------------------------TG-CATGATT--AGCGGGT
CGTGA------GGGGGTTGTGTGGTGTGTTTTGGCTGTATCAA----AATACTGCATGGTTTCGTTAATGAAATCGGGGG
AAAGATCCCTTTCTTTCAAAAAAATACCACAGCCAAGCCCGTCGCCTTGGCCGTCCCATCAGTCTCGGCCATTGATATCG
AGAAGCAGCGGTTCTTGGAAGATCCTGTTCGCCAACAAGTCAGTCGAGAGCTCCATCTTCCCTGTCATATGCGGTTCTTG
GAAGAACAGAAGGATCTTGTTCAACAACACATCAGTCAAGAGCCATCGATCGTCGGAGCTTGGAAGAAGAAGAAGATCTT
GTCGGGTTCTTCCCACCTCCCGGGCCCGAAGGAGATGCCGATGGGGAAGTACGGGTGCACACGGATATGCTTGACACGGC
GGCCCGGATCATGGCGCGCTTCTACGCGCACTGCCCCCACACGTCGTGTCTCTACTACAGGCCCCCGCCGCGGACCACCG
CCACAAGCAATAGTGGCAAGAGCGGGAACGCGAGGAGCTCTGCCAGCGAGGCCGAGGTATCGTCAGCGAGGAGGAATCCG
CAACAGGAGCAGGCGGTCAGGGTGGTGCTCGATGCCACGGAGATCATCCTCAGCGGGGGCGTGTAGCTGGCATTGCTCGC
CCGACACCACCCAACAACAGACAAAGACCCAAAGATGGTGTTGGATAGATTAGCATTTTTTTGATTAATTTAATCTATAA
ATAGATTCGAACATGACATTGACAGTATTAAATCTTATTCAGATATTTAAGCATGCTAACACATAATACCCATATAATAG
AGATATTTGCTAATAAAGGATGATGCATTTCTCCATTTTTCCCGTCTGTCATGTTTGAGCCAAACTAGTTAAATTTTATA
TATAGATTTTTTTATACCTCCTGTATTTCAATTTTTTTTTTGCATTGAGGGGTGCACCCCCGATTTCATTGCATTGATAA
AAAGAATACGACAAAACAGTTTTAACACACCAAAAAATCGTTTTGGGGCTCAAGCTACATGGAGCTTGTTCTTTTTTGTA
ACATCCAAAACTAGTGCTTTAGTGCTTCAAATTTTTTGAAAAAAAATTCGACAATATCATATGGATGTGTACTACATGGT
TGCAAAAATTGATGACCAAATACATTGACATGAGGGCTATACAAAAAGGACAAATCGCTGACATTGGAAACAGTGAACAC
-------------------ATAAAACCAACTATCTTCTCATTTTTTGTAGATCATGAATCAATGTA-TTTTTGATGAAAC
TTTATACATTGTAGTACACATTCATATGTCAATGTGGAGTTGTTTTCAGAATTTTTTA--AACTTTGAAACATGATTTTT
GAATGTTTCAAAAAAAGGACTCCATGTAGCCTAGGCACCAAAACGCTACATCCCTCCCACATGACGTACCACAGGAACGA
GATCCTCTGGCATACAAACAAGTTACTGTATAGGGACGTTGTTGCATCCACAGGCCTGCTCTCTCTTACAGCCGTGCAAT
AGTGAATGGGATGGGATCACCGAAAGCAGCACTAGCGAGCAGAAGGACGGTGAGTTGTGTGTAAGGAGATAGAGCAGATG
TGATCTGATCTGGTTGTCGACTAAGGCTTGAACGCAAATCAAGGGAAA
>chr4B_1
TATTCTTTCGATGCCCGCTTGCCAGATATATGTGGAACGTGGTCAGTTACTGCACTGGGCTTCAATGTGACTTCAGTGAT
ATGGACACATGTATACATGGTTGGCTTGAGGGTTTTGGGACAGAGAATAAGAA-AAAAAAAGGTTTTTGTTGGGGTGGCC
GCTATAATTTGGAGTATTTGGAAAGCTAGAAATTTAGCATGTTTCCAACGCGTGTGGCCTGCTGATCATAGTGTTTTGAT
GTTCAGGATGACGCACTGGATTAATGATTGGAGTTTTTTGCAGGTGAGGAAGGACGCGAAGGTGGAGTTGCAACGGGGCG
CAAAGCTGCTGGATCGAGTCGCCAGTGATATCTTCCAATCAAGACGAGGGTGGGCGACCTGGGTGCCCAGACTTGAGAAC
TGCTG-AGGATGAGATCATGGAAG------------------------------------------TTTGTAATCCTAGA
ATGTAGATTGTGTTGAGCTTGCATGCTCTTACAGACAGCTTGTGAAAAAT---CTGTGGTAACCTGGTTTCCTT------
--TTGTGTAATAAGGTAGACAGGGGAGGGAGAGAAGTGGGTTTTATA--------TCCCTTCGCCTATGCGCTGTGATGA
AAATGGTGCATAGGGCCGGAT-GGAG-TGTTATGCGCTCTCGTAGT---G------------------------------
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-------------------------------------------------------------TG-CATGTTTTTAGTA--G
GGTTTCGTGTTGAGGGGT-TGTGGTGCGTTTTGGCTGTACCAA----ATTACTACTTGGTTTTGTTAATGAAATCGGGGG
AAAGATCCCTTTCTTT----------------------------------------------------------------
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>chr4B_3
TTTTTTCT-GATGTCCGCTTGCCAGATATATGTGGAACATAGTCAGTTATTGCACTGGGTTCAGATGCAATTTCAATGAC
ATGGACACGTGCATACATATCTGGTTAAAGGACTTTGGGAAAGAGAATAAAAA-GAAA----GTCTTCGTCGGGGTAGTA
GCGCTTATATGGAGCATTTGGAAAGCTAGAAACTCAGCGTGTTTCCAGCATATCTGGCCGAATGATCCTAGCATCTTGTT
GTTCAAGATGTCGCATTGGATTAATAATTGGAGTTGTTTGCAAGTGAAGGCGGATGCAAAAATGGAGTTGCAACGGGGTG
CAAAGCTGCTGGATCGAGTCGCCAGTGAAGTATTTCAATCAAGAAGAGGATGGGCGACTTGGGTGCCAAGACTGGAAAAT
GGTTGAGATCG-----------AG------------------------------------------TTTGGA----TAGT
TTGCTGATTTTGTTGTCTGGTGGTTATC------------------TG------TGTTGTCTC----------T------
--CGATGTAATAAGGTAGTCTGGGAATT----GACGATGGTCTTTTT--------CTCCTCGCCTTATGTGCTGTGTT--
---TGGTGCATGGGTCTGATGGAGGG-TATGCTATGCGCTTGTGCAATAG------------------------------
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-------------------------------------------------------------GG-CATGCTTCTAAAAAGG
GCGTTGAGGAG----GACG-GTGTTGTGTTTTGGATGTATCAA----ACTACT---TGGTTTCTTTAATGAAATCGGGGG
AAAGATCCCTTTCTTTCAAAAAAA--------------------------------------------------------
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>chr1B_3
--TTCTTTCGATGCCCGCTTGCTAGATATATGTGGAATGTGGTCAGTTACTGCATTGGGCTCCTATGTGACTTCAGTGAT
ATGGACACATGTATACATAGTTGGCTTGAGGGTTTTGGGGTAGAGAATAAGAA-AAAA----GTTTTTGTTGGGGTGGCC
GCTCTAATTTGGAGTATCTGGAAAGCTAGGAACTTAGCATGTTTCCAATGCGTGTGGCCTACTGACCCTAGTGTTTTGAT
GTTCAGAATGTCGCACTGGATTAATGATTGGAGTTTTTTGCAGGTGAGGGAGGATGTAAAGGTGGAGCTGCAATGGGGCG
CAAAGCTACTGGATCGAGTTGCCAGTGATATCTTTCAATCAAGACGAGGCCGGGCGACCTGGGTGCCTAGACTGGAGAAC
TGCCG-AGGATGAGATCTTGGAAG------------------------------------------TTTGTAATCCTGGA
ACATAG-TTTTGCTGAGCTTGCATGTTCTTACAGTCAATTCGTGATTCAAAACGCGTGGTAACCTGGTTTCATT------
--TTGTGTAATAAGTTAGACAGGGGTTGGAGAGAAGTGGGTGTTATA--------CCCCTTCGCCTATGCATTGTGAAAA
AAATGGGGCATAGGGCCGGAGGGGAG-TGTTATGCGCTCTTGTAGT---G------------------------------
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-------------------------------------------------------------CA-CATGTTT--AGTA--G
AGTTTCATGTTGGGGGGTTCATGGTGTGTTTGGGTTGTATCAAGAATACTACA---TGGTTTCGTTAATGGAATCGGGGG
AAAGATCCCTTTCTTTCAAAAAAAATAC----------------------------------------------------
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>chr7D_3
--TTCTTTCGATGTCCACTTGCCAGGTATATGTGGAATGTTGTCAATCATTGCACTGGATTCTGATGTGACTTCAGTGAT
ATGGACACATGCCTACATGGTTGGCTTGGGGTTTTTGGGTCAGAGAATAAGAAAAAAA----GTCTTTGCAGGGGTGGCA
ACTCTAATGTGGAGTATTTGGAAAGCTAGGAATCTAGCTTGCTTTCAACATATTTGGCCTGCTGATCCTAGTGTAGTAAT
GTTCAGAATGTCACATTGGATTAATGAATGGAGTTTTTTGCAGGTGAGGAAGGATGCAAAAGTGGAGTTACAATGGGGCG
C-AAGGTGCTGGATCGAGTCGCCAGTGATATTTTCCAGTCAAGACGAGGGTGGGCGACCTGGGTGCCTAGGCTGAAGACC
TGCTG-AG-ATGAGAAATGGGAAAATCTATGTAATCATAGGGAAAAAAAGTGGCAGTATTTTATGTTTCAGA----TAGT
TTGCG--------------------------------------------T---GTGTGAAACCCTGGATTGAAC------
--TCGTGTAATAAGGATAATTGGGGGAGA-----AGAGGTAGTGGTCTGTTCTGTTCCTTTCGCCTATGTACTATGTC-A
AAATGGTACATAGAGCCAGAGGGG----GTTATGCGTTTCTGTAGT---G------------------------------
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-------------------------------------------------------------CG-CATAGTAGTGGTGATG
ATAGAGG---------------GGTATGTTTTGGTTGTATCAA----ATACTGTGAC-GTTTCGTTAATGAAATCAGGCG
AAAGATCTCTTTCTTTCAAAAAA---------------------------------------------------------
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>chr1B_6
-----TTTCGATGTCCGCTTGCCAGATATATGTGGAACGTTGTCAGTTATTGCACTGGATTCAGTTGTGACTTCAGTGAC
ATGGACACGTGCATACATGTTTGGTTGGATGCTTTTGAGGGAGAAAATAAGAA-GAAA----ATTTTTGTCGGAATAGCG
GCACTAATCTGGAGCATTTGGAAAACTAGAAACTCAGCGTGCTTTCAACATGTCTGGCCTAATGACCCAAGTGTAATGAT
GTTTAGAATGTCACATTGGATTAATGATTGGAGTTGCTTGCAGGTGAGGGAGGACGCAAAAGTGGAGCTGCAACGGGGCG
CAAAGCTGCTGGACCGAGTCGCTAGTGATCTTTTCCAATCAAGACGAGGATGGGCGACTTGGGTGCCAAGACTGGAGGAG
GGTTGAAA---------ATCGAAG------------------------------------------TTTAGA----TAGT
TTACTCATCTTGTTGCCTGAAGGTTCTGTTT---------------------------------TGATTCCCTT------
--TGATGTAATAGGGTAATTCGGGATTCT-----ACTGGTGGTTTTC--------CCCTTCCGTCTACGTACTGTCAGCA
GGCGGG-----AGTGATGGGA-GGGGGTAGGTTACGTGCAGAT-GT---G------------------------------
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-------------------------------------------------------------GACCTTTACT--AGCA--G
GCGTTGAAGGTGGCCAACG-GTGTGGCGTTCTGGTTGTATCAA----AACACT---TGGTTTCTTTAATGAAATCGGGGG
AAAGATCCCTTTCTTTCAAAAA----------------------------------------------------------
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>chr7D_6
TTTCCG----ATGTCCGCTTGCTAGATATATGTGGAACGTAGTCAGTTATTGCACTGGGTTCAGATGTGATTTCAGTGAC
ATGGACACGTGCATACATATCTGGTTAGATACCTTTGGGAAAGAAAATAAAAA-GAAA----ATCTTTGTCGGGGTAGCA
GCGCTAATCTGGAGCATTTGGAAAGCTAGAAACTCAGCGTGTTTCCAGCATGTTTGGCCTAATGATCCTAGTATCTTGAT
GTTTAGAATGTCGCATTGGATTAATGATTGGAGTTGCTTGCAGGTGAAGGAGGACGCAAAAGTGGAACTGCAACGGGGCG
CAAAGCTGCTGGATCGAGTCGCCAGTGAAATATTTCAGTCAAGACGAGGATGGGCGACTTGGGTGCCAAGACTGGAGAAT
GGTTG-AA---------GCCGAAG------------------------------------------TTTGGA----TAGT
TCGCTTATCTTGTTACCTGATGGTTCTT------------------TG------A-----------GTTTCCTT------
--TGCTGTAATAAGGTAGTTTTGGGTATTGT-----TGGTGATCTTC--------CCCTCCCCCCTACGTGCTCTCAGCA
GGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG-CATGTTTC--------
-----------------------------TTTCGATGTATCGA-------ACTACTTGGTTTCTTTAATGAAATCGGGGG
AAAGATCCCTTTCATTCAAAAAAA--------------------------------------------------------
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>chr4A_6
-----TTTCGATGTCCGCTTGCCAAATATATGTGGAACGTTGTCAGTTATTGCACTGGGCTCAGTTGTGACTTCAGTGAC
ATGGACACGTG--------TTTGGTTAGATGCTTTTGGGGGAGAACATAAGAA-AAAG----ATCTTTGTTGGAATAGCA
GCACTAATCTAGAGCATTTGGAAAACTAGAAACTCAGCATGCTTTCAACATGTCTGGCCTAATGATCCTAGTGTAGTGAT
GTTTAGAATGTCACATTGGATTAATGATTGAAGTTGCTTGCAGGTGAGGGAGGACGCAAAAGTGGAGCTGCAACGGGGCG
CAAAATTGCTGGACCGAGTCGCCAGTGATCTTTTTCAATCAAGACGAGGATGGGCGACTTGGGTGCCAAGACTGGAGGAT
AGATG-AA---------TTCGAAG------------------------------------------TTTA----------
-----CATCTTGTTGCCTGAGGTTTTTT------------------TG------T-----------TGTTTTTGATCTTC
TCCGATGTAATAAGGTAGCTCGGGATTCT-----ACTGGTGGTTTTC--------CCCTTCCCTATACGTATTGTCAGCA
GGCGGG-----AGTGACAGGA-GGGGGTGGGGTTCGTGCTGGT-GT---G------------------------------
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-------------------------------------------------------------GA-CTTTCCT--AGCA--G
GCGTTGAAGGTGGTCGACG-GTGTTGCGTTTTGGCTGTATCGA----ACTACT---TGGTTTCCTTAATGAAATCGGGGG
AAAGATCCCTTTCTTTCAAAAAAAAAC-----------------------------------------------------
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>chr5A_1709
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------------------------------------------------------TATCATATGGATGTGTACTGCATGCT
TGCAAAAAGTGATGACCAAATACATTGACATGAGGGCTACACAAAAAGGACAAATCGCTGACATTGGGAACAGTCAACAG
TGCGTGCACTGTTCACTATATAAAACCAACTATCTTCTCTTTTTTTGTAGATCATGAATCAATGTATTTTTTGATGAAAC
TTTATACATTGTAGTAGACATTCATATGTCAATGTGGAATTATTTTCAGAATCTTTTTGTAACTTTGAAACATGATTTTT
GAATGTCTCAAAAAAAGGACTCCATGTAGCCCAGACACCAAAACGTTGCATCCCTCCCACACGACGTACCACCGGAACGA
GATCCTCTGACGTACAAACAAGCTACTGCAAAGGGATGTTGTTGCATTCGGAGGTCTGCTCTCTCTTACAACCGTGCAGT
AGTGAATGGGATGGGATCGCCGAAAGCAGCACTAGCGAGCAAAAGGACAGTGGATTGTGTGTAAGGAGGTAGAGCAGATG
TGATATGATCTGGTTGTCGACTAGGGCTCGAACGCAAATCAAGGGAAA
>SNPs
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-----S----------------S---------------------------------------------S-----------
-------------------------S------------------------------------------------------
S-------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
---S---S----S--S-----S-------S-S-----------SS--------------------S--------------
--------------S------------S---S-----S------S------------S----------------------
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-----------------------------------------------------------------------------S-S
S---------------S------------------------------------S--------------------------
------------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S----S-
--------S------------------------------S---------------------------S------S----S
---------------------------------------S----------------------------------------
----------------S---------------------S--S----------S----S----------------------
------S------------------------S--S----------S-S-------------S----------S-------
---------S-S----------S-----S-S-----S----------S-SS---S---------------S-------S-
------------------S----------------------S------S---SS--------------S-----------
----S------------------S----S-------------------
>forward_1255
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-----------------------------------TCAAGAGCCATCGATCGTCG-------------------------
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>reverse_2455
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------------------------------------------------------CCTGCTCTCTCTTACAGCCG------
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