>input_sequence_86214
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---ATGAAAACAACTTGTCATACTTCTTAC---GCTTCATCAGTCAGTCGATTCAGTCGAGGAAAATTCCCGGCAATTTC
AAGTGAATCCGATTGGTTCTATAGGCATGTGCCCTGTCCTGCGGCTTTCTTTTTCTGTCGTTTGCATCGAAGATTACAAA
ATTTCGATGCATGTTCCTGGTTCATAAGTGGCACCTTAATAAAAGGTCTCTTGTTTCCAATGCCGCTTCTGATGGGAGAT
TGTTAA--------------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G221300
GCGCAAATCCATCTACCA--CCCGTAACCTCCCTCCCT---------CTGCCCTGCCCTCTCTCCCACGCTGCTGCTC--
----------------CCACCTCCTCCCTCCCCCTCTCTGCTCTTGTTTCTGCGGAAGCAAAACCCCACGCCAGACCAGC
CGTGGCGAATCCGCCAGCGCCCACCGTCTGGTGCCC---------GCTCGACCCGGAGCCTCCCCGAGGAGCAGCAGCAG
CAGCAGGAGGAGGAGGAGGAGCCGGCGGCGTTTTGTCTCCGAGCTGTCGCCGCCGGTGCTCTCAAGGTGAGCCTCCT---
-GGCGCCTGCCTGTGTCTGGTCGGTTTAGGAGCTGGGGGTCTAGGGTTCGTTG--------------CTGCGCCCTGTT-
-------TGC--GGGAGATAGTTTTTCGGTTTTGTGTTTTGCTGCTGTTCAATTCGAGGAGGGCGATGTG--CCTACCTA
GGCAGGCGCGCGCCAGGTGTTTGTTTGTTTGTTTGTTGTTCGGG--------GGGAGGGAGTGCTGGGCTGTGCGATCGA
GGGTT-GGTTCAATCTGTCAATGGAGATGACGGACGATGTTTGCGAGACTGCACAGCTCGGATGATCTGGATGCGCCCCG
AAT----CAGTCGGTTTGTACGGAGAGAACATCGGCGACGCCGCTATGCTTGTCTTGGGTTCGTCGACGTTCTCGAATGA
GTGCTGATGCCAGTGCGCGGGTTGGGTTGTGTTCCCCGCTGCGGATTCTGTGGGCGTCAATCCTGAGAAATT---TGTGT
CTTAGTACGTTTGTTTCACTTGGTCCTCGTTCTAGCACAGCTCC------------------------------------
CAAGTCTCCACTCTTTGGTGATTTCGATGCTTGATTAGTACCCGCTGCAATTTTTTACTGCTGTTAATTAATCGTGTTAG
GTGACTTGACACATCTTGTCTCCTAG---TAGCAGCAATCCAGCCACACTTACCTCCTACAGCCCTCCAAAGAAAATGTG
CTCATGCAATTTGTTCTTGATTCACTTTTGGTGGGTGAATTCTTCGAGCAAGCCATCAAGAAATATCCAATGTAGAGCCA
GCAATGAAAACAACTTGTCATACTTCTTAC---GCTTCATCAGTCAGTCGATTCAGTCGAGGAAAATTCCCGGCAATTTC
AAGTGAATCCGATTGGTTCTATAGGCATGTGCCCTGTCCTGCGGCTTTCTTTTTCTGTCGTTTGCATCGAAGATTACAAA
ATTTCGATGCATGTTCCTGGTTCATAAGTGGCACCTTAATAAAAGGTCTCTTGTTTCCAATGCCGCTTCTGATGGGAGAT
TGTTAATCTGCTAGGCAAAGAGATTCGCCTCACATGCATGTGATGATGTGGATTTCCTTGTCTGTCCCAAAACCCCTCAG
AATCTCCGCAAATAGTTTTGTTTATTGGCTTCGTCCTTGCTCGAATGCCTCATGTTACATGGCAACAGCAATTTGCACAA
AACATCTTCCATTATATATATTTATTAGTGTATGAGCAGTGCATCTATAAATGCCACCTTCCTCCCTCTCTTGATTAGGA
GCCTCCATTATATAACTTCTCCCTCCCTGGTCCAACCATGACATCTGTGTGAGAGGGTTGAGGGAACAGCTGCCGCAGGT
TTTGTACTGGAAGTGGGTATGTTATTCAGTTACCTGCAGTTTCAGGATCGCTTTGGTACATTGCTTAAAC-ATGTTGACA
CTGTATTTTTCTTGGTTTTTGTGTGTCTGGATAGTTTGTCTTGCTTGTTTCAAGTGAATCTAGTTGAATGATCTTCTTCA
TTTGGCCTAGTCTGATTGTTTGATGTCTGCATGTGGACCTTCTGCAGATCTGGGCCACTGAAGCATTGCAGTAGAGCCTG
CAGGGAGCTAATTTCATGAGAGACGTGTTGATGTGGTTGGTTCTAGAAATTACTATTCTTCATGGATGTTCATAAGAGCA
CTGTGCAGAAAGCTGCTCTTGTTGAAGAAACTCGAAGACCACCACTTGTTCCATCTGAGAAGCATAATGCTTCTTCTTTA
AGCCGAGTGAGAGATGTTGCATCCAGGTACAAGACTGGTCAGGGTGCTACTGCGACAAGGCGATGTACATCTCCTAGTCT
TGGCCGGACCTCAACAACTAATGGTACACCAGTGCCCAATAGGGCGCAATCTGCAGACAGAAGAAGACCCTCAACACCTT
CAACCCCTTCTTCTAAGGTGTCAACACCCTCCACCCCAACATCAAGGTCCATAACACCAGTCCGTGATACTGTCAAAGAG
GTAAATAAGAGTTCTAGGTGTATAGCAAATGAAAGGTCCCCACATGG
>chr5A_1
GCGCGAATCCATCTACTCCCCCCGTAACCTCCCTCCCTCCCTCTGCCCTGCCCTGCCCTCTCTCCCACGCTGCGGGCTGC
GCGCCCCCTCCCACCTCCACCTCCT-----CCCCCCTCTGCT-CTGTTCCTGCGGAAGCAAAACCCCACGCCGAACCAGG
CGTGGCGAATCCGCGAGCGCCCGCCGTCTGGTGCCC---------GCTCTACCCGGAGCTGCCCCGAGGAGGAGGG---G
CAGCAGGAGGAAGAGGAGCAGCAGGCGGCCTTTGGTCTCCGAGCTGTCGCCGCCGGTGCTCTCGAGGTGAGCCTCCTCCC
TGGCGCCTGCA------TGGTCGGTTTCGGAGCTGGGAGTCTAGGGTTCGTTGTTCGGAGGCCCTGGCTGCGGCCTGTC-
-------TGCTGGGGAGATAGTTTTTCGGCTTTGTGTTTTGCTGCTGTTCAATTTGAGGAGGGCGAGGTGCTCCTCCCTA
GCCAGGCGCGCACCAGGTGTTTGTTTGTTTGTTAGTTATTGTAGGAGAGGACGAGAGGTAGTGCTGGGCTGTGCGATCGA
GAGCTGGGTTCAGTCTGTCAATGGAGACGACGGACGATGTTTGCGAGACTGCACAGCTCGGATGATCTGGAGTTCTGGAC
GCGCCCCCAATCGGGTTGTACGGAGAGAGCATCGGCGACGCCGCTATGCTTGTCTTGGGCTCGTCGACGTTCTCGAATGA
GTGCTCATGCCAGTGCGCGGGTTGGATTGGGTTCCCCGCTGCGGATTCCGTGGGCGTGAGCCCTGAGAAATT---TGTGT
CTTC---CGTTTGTTTCCCTTGGTCCTCGTTCTAGCACGGCTGGGGAAATTAATTTGTTATTAAGGCTACGTAGTACTCT
CAATTCTAGACTCTTTGGTGATTTCGATGCTTGATTAGTACCCGCTGCAATTTTTTACTGCCCTTAATTAATCGTGTTAG
GTGACTAGACACA-CTTGTCTCCTAG---TAGCAGCAATCCAGCCACACTTAACTCCTGCAGTGAGCCAAAGAAAATGTG
CTCATGCAATTTGTGCTTGATTCACTTTCGGTGGGTGAATTCTTCGAGCAAGCCCTCAAGAATTATCCAATGTAGATGCA
GCAATGAAAGCAACGTGTCATACTTCTTACAACGCTTCATCGGTCAGTCGATTCAGTCGAGGAAAATTCCCGGCAATTTC
AAGTGAATCCCATTGGTTCTATAGGCATGTGCCCTGTCCTGCGGCTTTCTTTTTCTGTTGTTTGCATCGAAGATTACAAA
ATCTCGATGCATGTTCCTGGTTCATAAGTGGCACCTTAATAAAAGGTCTCTTGTTTCCAATGCCGCTTCTGATGGGAGAT
TGTTAATCTGCTAGGCAAAGAGATTCGCCTCACATGCTTGTGATGATGTGGATTTCCTTGTCTGTCCCAAAACCCCTCAG
AATCTCCGCAAGTAGTTTTGTTTATTGGCTTCGTCCTTGCTCGAATGCCTCATGTTACATGGCAACAGCAATTTGCACAA
AACATCTTCTATTTTATATTTTTATTAGTGTATGAGCAGTGCATCTATAAATGCCACCTTCCTCCCTCCCTTGCTTAGGA
GCCTCCATTATATAACTTCTCCCTCCCTGGTCCAACCATGGCATCTCTGTGAGAGGGTTGAGGGAGCAGCTGCCGCAAGT
TTTGTACTGGAAGTGGGTATGTTATTCATTTACCTGCAGTTTCAGGATCGCTTTGGTACATTGCTTAAAC-ATGTTGACT
CTGTATTTTTCTTGGTTTTTGTGTGTCTGGATAGTTTGTCTTGCTTGTTTCAAGTGAATCTAGTTGAATGAATTTCTTCA
TTTGGCCTAGTCTGATTGTTTGATGTCTGTATGTGGACCTTCTGCAGATCTGGGCCACTGAAGCATTGCAGTAGAGCCTG
CAGGGAGCTAATTTCATGAGAGACGTGTTGATGTGGTTGGTTCTAGAAATTACTATTCTTCATGGATGTTCATAAGAGCA
CTGTGCAGAAAGCTGCTCTTGTTGAAGAAACTCGAAGACCGCCGCTTGTTCCATCTGAGAAGCATAATGCTTCTTCTTTA
AGCCGAGTGAGAGATGTTGCATCCAGGTACAAGACTGGTCAGGGTGCTACTGCGACAAGGCGATGTACATCTCCTAGTCT
TGGCCGGACCTCAACAACTAATGGTACACCAGTGCCCAATAGGGCGCAATCTGCAGACAGAAGAAGACCCTCAACACCTT
CAACCCCTTCTTCTAAGGTGTCAACACCCTCCACCCCAACATCAAGGTCCATAACACCAGTCCGTGATACTGTCAAAGAG
GTAAATAAGAGTTCTAGGTGTATAGCAAATGAAAGGTCCCCACATGG
>chr5D_1
GCGCAAATCCATCTACCA--CCCGTAACCTCCCTCCCT---------CTGC-----CCTCTCTCCCACGCTGCTGCTCGT
---CCCCCTCCCACCTCCCCCTCC-CCCTCCCCCTCTCTGCT-TTGTTCCTGCGGAAGCAAAACCCCACGCCAGGCCAGC
CGTGGCAAATCCGCGAGCGCCCGCCGTCTGGTGCTCCAGGAGGCTGCTCGACCCGGAGCTGCCTCGAGGAGCAGCA---G
GAGC------------------CGGCGGCGTTTGGTCTCCGAGCTGTCGCCGCCGGTGCTGTCGAGGTGAGCCTCCTCCC
TGGCGCCTGCCTGTGTCTGGTCGGTTCCGGAGCCGGGGGTCTAGGGTTCGTTG--------------CTGTTGTGAGGCG
CTGTTGCTGC--GGGAGAT-GTTTTTCGGTTTTGTGGTGTGCCGCTGTTCAATTCGAGGAGGGCGAGGTGC--CTCCCTA
GGCAGGCGCGCGCCAGGTGTTTGTTTGTTTGTTTGTTATTGTGG--------GAGAGGTAGTGCTGGGCTGTGCGATCGA
GAGTTGGGTTCAATCTGTCAATGGAGACGACGGACGATGTTTGCGAGACTGCACAGCTCACATGATCTGGACGCGCTCCG
AAT----CAGTCGGTTTGTACGGAGACAACATCGGCGACGCCGCTATGCTTGTCTTGGGTTCGTCGACGTTCTCGAATGA
GTGCTGATGCCAGTGCGCGGGTTGGGTTGGGTTCCCCGCTGCGGATTCCGTGGGCGTCAGTCCTGAGAAATACTATGTGT
CTTC---CGTTTGTTTCACTTGGCCCTCGTTCTAGCACGGCTGGGGAAATTAATTTGTTATTAAGGCTACGTG---CTCT
CAAGTCTCCACTCTTTGGTGATTTCGATGCTTGATTAGTACCCGCTGCAATTTTTTTCTGCCGTTAATTAATCGTGTTAG
GTGACTTGACACATCTTGTCTCCTAGTACTAGCAGCAATCCAGCCACACTTA---------------------------G
CTCATGCAATTTGTGCTTGATTCACTTTTGGTGGGTGAACTCTTCGAGCAAGCCATCAAGAATTATCCAATGTAGAGCCA
ACAATGAAAGCAACGTGTCATACTTCTTACTAGGCTTCATCAGTCAGTCGATCCAGTCGAGGAAAATTCCCGGCAATTTC
AAGTGAATCAGATTGGTTCTATAGGCATGTGCCCTGTCCTGCGGCTCTGTTTTTCTGTCGTTTGTATCGAAGATTACAAA
ATCTCGATGCATGTTCCTGGTTCATAAGTGGCACCTTAATAAAAGGTCTCTTGTTTCCAATGCCGCTTCTGATGGGGCAT
TGTTAGTCTGCTAGGCAAAGAGATTCGCCTCACATGCATGTGATGATGTGGATTTCCCTGTCTGTCCCAAAACCCCTCAG
AATCTCCGCAAATAGTTTTGTTTATTGGCTTCGTCCTTGCTCGAATGCCTCATGTTACATGGCAACAGCAATTTGCACAA
AACATCTTCTATTTTATATTTTTATTAGTGTATGAGCAGTGCATCTATAAATGCCACCTTCCTCCCTCCCTTGCTTAGGA
GCCTCCATTATATAACTTCTCCCTCCCTGGTCCAACCATGGCATCTCTGTGAGAGGGTTGAGGGAACAGCTACCGCAAGT
TTTGTACTGGAAGCGGGTATGTTATTCGGTTACCTGCAGTTTCAGGATCGCTTCGGTACATTGCTTAAAATATGTTGGCG
CTGTATTTTTCTTGGTTTTTGTGTGTCTGGATAGTTTGCCTTGCTTGTTTCAAGTGAATCTAGTTGAATGAATTTCTTCA
TCTGGCCTAGTCTGATTGTTTGATGTCTGTGTGCGGACCTTCTGCAGATCTGGGCCACTGAAGCATTGCAGTAGAGCGTG
CAGGGAGCTAATTTCATGAGAGACACGTTGATGTGGTTGGTTCTAGAAATTACTAATCTTCATGGATGTTCATAAGAGCA
CTGTGCAGAAAGCTGCTCTTGTTGAAGAAACTCGAAGACCGCCGCTTGTTCCATCTGAGAAGCATAATGCTTCTTCTTTA
AGCCGAGTGAGAGATGTTGCATCCAGGTACAAGACTGGTCAGGGTGCTACTGCGACAAGGCGATGTACATCTCCTAGTCT
TGGCCGGACCTCAACAACTAATGGTACACCAGTGCCCAATAGGGCGCAATCTGCAGACAGAAGAAGACCCTCAACACCTT
CAACCCCTTCTTCTAAGGTGTCAACACCCTCCACCCCAAGATCAAGGTCCATAACACCAGTCCGTGATACTGTCAAAGAG
GTAAATAAGAGTTCTAGGTGTATAGCAAATGAAAGGTCCCCACATGG
>SNPs
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------------------------------------------S-----S-------------------------------
--------------S-------S------------------------------------SS---------------SSS-
-----------S------S--------------S-----------------------------S----------------
---------------------------S--------------------------------------------S-----S-
------------------------------------------------------------------S--------S----
-------------------------------------S--SS-----------S----S---------------------
-S-------------------------S-------------------------------------------S----S---
--------------------------------------------------------------------------------
-----------------------------S------------------S----------S--------------------
---SSSS-------------------------------S---SS------------------------------------
-------------------------------------------------------------S------------------
----------------------------------------------------S-----S---SSSS--------------
--------------S-----------------------------------------------S-----------------
---------S----S-----------------------------------------------------------------
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--S-----------------------------------------------------------------------------
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---------S---S-----S------------------------------------------------S----S------
----------------------------------------S-----S------------------------------S--
-------------------------------------------------------------------------------S
-----------------------------------------------------------------------SS-------
-----------------------------S--------------------------------------------------
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----------------------------------------S--S------------------------------------
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>forward_348
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--------GCCTGTGTCTGGTCGGTTTA----------------------------------------------------
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>reverse_1647
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----------------------------------------------GTGTGAGAGGGTTGAGGGAA--------------
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