>input_sequence_86201
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-------------------------------------------ATGCCGGTCCCGATGACCTGGCTGACGAAGAGCGCCC
GCGGCGAGGTGAGCGTCAGGTACCCGGTCTTGAAGTCCGACATGAAGTCGGAGGCGGTGGAGACGATGGACGAGACGACG
CCGCAGATGACGAGGCTCCCCACCACCCCGCCGTTGCCGTACCCGATCCACGACGCGAACAGCAGGATCACCAGCTTGCT
GTACTGCGCCGCGAAGTTGGTCTCGGCCACCCCCGTGCCGTAG-------------------------------------
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>chr3B_1_TraesCS3B01G382200
ATGGAATAGTGCGTGTTGGCAAGTGTTGTGTGGTGGAGGTCTGAAGAAAAGCTCCAGTGTCAGGCCGCGCAAACAGCTGG
TGAACTGAGCAGAAATCAGTTGCACATCTCATCAGGGTCCTTTGGTTTCTCCGGGTTTTTGTTTTGTTTTGAAAAAGCTA
TCTGTTTCTTGATTCCCGCACCTCAAATGCACATGAAGCCTCCTTGACCTGTTGATTCATCTGATCCACTATGGTCATGG
TCACTCTGTTTGCTACT--------------------------------------AGTTAGCTTTGTATTGTACATTTGC
ACTACATAGTTGATCAC--------------------------------------TCTACATCAAATGACCAACAATCGC
AAAAGTTCCAACTTACTCCCTCCGTAAATGCTCTCATATTTTTTTACAGAGGGAGGGAGTACATGCTATCACTAGATCAT
GTCG-------TCGTATCATCATGGCAGAATCTACAGGTCAGGAAGGGTTGGGTGTCGGCAGCCTTCATCGGGACTTCTC
AAGTACAGTGGCCAGGTAGGCGTCCAGCTTCTCGTTCTGCTCCCTGGCGACGAACCTGATGCAGATGGGCGGCGTGACGT
CGTACCTGGCGAGCAGCGCATAGGGGATGGAGAAGAGCCCGTCGCCGCAGATGAGCCCGGACGCCAGCACCGGCCCGAAC
ACCTGCGCGCCGTCCCTGTCCGACCTGGTCCACAGGTAGAGCACCAGGCTGCCCACGCACATGTCGATGGCCACCGCCGG
CACCAGCAGGAACGACATGGCCATGCCGGTGACGCTCGGGATGAAGTTCCTTGCGCGCCACTTGTAGTGCACCGCCGCCT
CCCGCAGCGCGCACACCACCAGTGCCAGCACGAAGAAGCCCACGCTCATGCTCAGGCAGTGCCTGGGCAGGTCCAGGTCG
CCGACGCCGACCACGGCGATGGCCCGGTAGATCTTGGCCAGCGGCACCTGGTAGATCTTGTTCCCGGCCTCCTCGTAGAA
GTGGTGGAACACGGTGAACACGGCCGGGTTGACGACGCAGCCGATGCCGGTCCCGATGACCTGGCTGACGAAGAGCGCCC
GCGGCGAGGTGAGCGTCAGGTACCCGGTCTTGAAGTCCGACATGAAGTCGGAGGCGGTGGAGACGATGGACGAGACGACG
CCGCAGATGACGAGGCTCCCCACCACCCCGCCGTTGCCGTACCCGATCCACGACGCGAACAGCAGGATCACCAGCTTGCT
GTACTGCGCCGCGAAGTTGGTCTCGGCCACCCCCGTGCCGTAGGCGTTGCAGAAGGCCAGCAGCGGCGCGAACACGTACG
CCGTCGCCACGTGGTAGTGCCGCACCTGGCCGTAGAGGTGCGGGATGGCGACGGTGGACAGCAGCGCCAGCGCGGCGTAG
CCGCCCATGGCGAGGGTGCCCGGGACGTGCTCCCGGAGGAACACCTGCGTCCGGCGCCGGTCGTCGAAGCTGAGCACGTT
GCGCGGCACCGCGTTGGCGTCGGAGAAGGACCGCAGCGCCTCCGCCGCCTCCAGCTGGTGGTGCCGCATCGTCTGCAGGG
TCCTCACCATGATCACCACCAGCTGGAAGATGCCGTCGCCCAGGATCATGCCTATGGCGCCAAACACCTGAAATTACATC
ACCAGTCGAATAGAGCGTGCGTGCGTGCATGTCTCGTCGAAATCTGTCGGTCGATCAGAAACCACGCACCTTGTACCCGT
TGATGCCACGCAAACTGCCTTCCTGGAGATCGGCGGCGTACCAGCTCCCCTCTTTGGTTTCGATGTAGGGCCACATGAAT
CCCCAGGAGATGATGGCCCCGACCAGCATCGAGATGTTTATCAGGTAAGGGCTGATCATCCCGACGCCGACGTATGTTCC
GTTCAAATTGAGGTAGAAGCTGCATGCAAGTATCACACAACACAAGTAGCTCTCACTGATCATCTCTAGCAAGTAGTTCT
CAGTTGGAGCGCGACATGTAGAAG-AATGGATGGATAAGTTAC----CCGCGATTGAAGGCGTCGAGCCCAAACGAAGGG
AAGAAGGTCATGCCACAGTGCGGTCCGCCGGAGTAAAACCATTGGAAGATAGACATGAAAAAGCTTCCCAGGCACGAGTG
GATCATCAGAGACACTTGCTTCCTGTGTTAAGAAACAGAGGCACTCCAATCGATTACCCAACCCAGCATTATCTTATCTT
GTTGCTTGCTACCGGAGTTGAGCATGAGCAGTAGCTAGGTTTCATGTGAC----TTAGTAGCTCCGTACGTGCTTACTTT
GCTTGCATGGCT
>chr3D_1
ATAGAATAGTGCGTGTTGGCTAGTGTTGAGTGGTGCAAGTCTGAAGAAAAGCTCCAGTGTCAGGCTGCGCAAACAGCTGG
TGAACTGAGCAGAAATCAGTTGCACATCTCATCAGGGTTCTTTGGTTTCTCAGGGTTTTTGTTTTGTTTTGAAAAAGCTA
TCTGTTTCTTGTTTCCCGCACCTCAAATGCACATGAAGCCTCGTTGATATGTTGATTCATCTGATCCACTATGGTCATGG
TCACTCTGTTTGCTACTCCCTCTGTCCCATAATATAAGAGCGTTTTTTAACTAGTAGTTAGGTTTGTATTGTACATTTGC
ACTACATAGTTGATCAT-GTGGTAAACTGCTGACATGGTCGAAAAGTCTGTTCATTCTACATCAAACGACCAATAATTGC
AGAAGTTCCAATTTA----------------------------------------------CATGCTATCACTAGATCAT
GTCG-------TCGTATCATCATGGCAGGATCTACAGGTCAGGAAGGGTTGGGTGTCGACAGCCTTCATCGGGACTTCTC
AAGTACAGTGGCCAGGTAGGCGTCCAGCTTGTCGTTCTGCTCCCTGGCGACGAACCTGATGCAGATGGGCGGCGTGACGC
CGTACCTGGCGAGCAGCGCGTAGGGGATGGAGAAGAGCCCGTCGCCGCAGATGAGCCCGGACGCGAGCACCGGCCCGAAC
GCCTGCGCGCCGTCCCTGTCCGACCTGGTCCACAGGTAGAGCACCAGGCTGCCGACGCACATGTCGATGGCCACCGCCGG
CACCAGCAGGAACGACATGGCCATGCCGGTGACGCTCGGGATGAAGTTCCTTGCGCGCCACTTGTAGTGCACCGCCGCTT
CCCGCAGCGCGCACACCGCCAGCGCCAGCACGAAGAAGCCCACGCTCATGCTCAGGCAGTGCCGGGGCAGGTCCAGGTCG
CCGACGCCGACCACGGCGATGGCCCGGTAGATCTTGGCCAGCGGCACCTGGTAGATCTTGTTCCCGGCCTCCTCGTAGAA
GTGGTGGAACACGGTGAACACGGCCGGGTTGACGACGCAGCCGATGCCGGTCCCGATGACCTGGCTCACGAAGAGCGCGC
GCGGCGAGGTGAGCGTCAGGTACCCGGTCTTGAAGTCCGACATGAAGTCGGAGGCGGTGGAGACGACGGACGAGACGACG
CCGCAGATGACGAGGCTCCCCACCACCCCGCCGTTGCCGTACCCGATCCACGACGCGAACAGCAGGATCACCAGCTTGCT
GTACTGCGCCGCGAAGTTGGTCTCGGCCACGCCCGTGCCGTAGGCGTTGCAGAAGGCCAGCAGCGGCGCGAACACGTACG
CCGTCGCCACGTGGTAGTGCCGCACCTGGCCGTAGAGGTGCGGGATGGCGACGGTGGACAGCAGCGCCAGGGCCGCGTAG
CCGCCCATGGCGAGGGTGCCCGGGACGTGCTCCCGGAGGAACACCTGCGTCCGGCGCCGGTCGTCGAAGCTGAGCACGTT
GCGCGGCACCGCGTTGGCGTCGGAGAAGGACCGCAGCGCCTCCGCCGCCTCCAGCTGGTGGTGCCGCATCGTCTGCAGGG
TCCTCACCATGATCACCACCAGCTGGAAGATGCCGTCGCCCAGGATCATGCCTATGGCGCCAAACACCTGAAATTACATC
ACCAGTCGAATAGAGCGTGCGTGCATGTGCTCCACGTCCAAATCTGTTGGTCGATCAGAAACTACGCACCTTGTAGCCGT
TGATGCCACGCAAGCTGCCTTCCTGGAGATCGGCGGCGTACCAGCTCCCCTCTTTGGTTTCGATGTAGGGCCACATGAAT
CCCCAGGAGACGATGGCCCCGACCAGCATCGAGATGTTTATCAGGTAAGGGCTGATCATCCCGACGCCGACGTATGTTCC
GTTCAAATTGAGGTAGAAGCTGAACGC----ATCACACAGCACAAGTAGCTTTCACTGATCATCTCTAACAAGTAGTTCT
CGGTTGGATTGCGACATGTAGAATGGATGGATGGATAAGTTAC----CCGCGATTGAAGGCGGCAAGCCCAAATGAAGGG
AAGAAGGTCATGCCACAATGCGGTCCGCCGGAGTAAAACCATTGGAAGATGGACACGAAAAAGCTTCCCAGGCACGACTG
GATCATCAGAGACACTTGCTTCCTGTGTTATGAAAC----------CAATGGATTACTCAACCCAGCATTATCTTATCTT
GTTGCTTGCTACCGGAGT------TGAGCAGTAGCTAGGTTGATGTGAT-TGATTTAGTAGCTCCGTGCGTGCTTACTTT
GCTTGCATGGCT
>chr3A_1
ATAGAATAGTACGTGTTGTCAAGTGTTGTGTGGTCGAGGTCTGAAGAAAAGCTCCAGTGTCAGGGCGCGCAAACAGCTGG
TGAACTGGGCAGAAATCAGTTGCACATCTCATCAGGGTTCTTTGGTTTCTTCGGGGTTTCCTTTTC--TTGAAAAAGCTA
TCTCTTTCTTGATTCCCACACCTCAAATGCACATCATCCCTCCTTGATCTGTTGATTCATCTGATCCACTATGGTCACGG
TCACTCTGTTTGCTATT---------------------------------------GTTAGCTTTGTATTGTACATTTGC
ACCACATAGTTGATCATGGTGGAAAACTGCCGACATGCTTGAAAAGTCTGTTCATTCTACACCAAACGACCAACAATTGC
AGAAGTTCCAATTTA----------------------------------------------CATGCTATCACTAGATCAT
GTCGTCGTATGTCGTATCATCTTGGCAGGATCTACAGGTGAGGAAGGGTTGAGTGTCGACGGCCTTCATCGAGACTTCTC
AAGTACAGTGGCCAGGTAGGCGTCCAGCTTCTCGTTCTGCTCCCTGGCGACGAACCTGATGCAGATGGGCGGCGTGACGT
CGTACCTGGCGAGCAGCGCGTAGGGGATGGAGAAGAGCCCGTCACCGCAGATGAGCCCGGACGCGAGCACCGGCCCGAAC
GCCTGCGCGCCGTCCCTGTCCGACCTGGTCCACAGGTAGAGCACCAGGCTGCCGACGCACATGTCGATGGCCACCGCCGG
CACCAGAAGGAACGACATGGCCATGCCGGTGACGCTCGGGATGAAGTTCCGCGCGCGCCACTTGTAGTGCACCGCCGCCT
CCCGCAGCGCGCACACCGCCAGCGCCAGCACGAAGAAGCCCACGCTCATGCTCAGGCAGTGCCTGGGCAGGTCCAGGTCG
CCGACGCCGACCACGGCGATGGCCCGGTAGATCTTGGCCAGCGGCACCTGGTAGATCTTGTTCCCGGCCTCCTCGTAGAA
GTGGTGGAACACGGTGAACACGGCCGGGTTGACGACGCAGCCGATGCCGGTCCCGATGACCTGGCTCACGAAGAGCGCCC
GCGGCGAGGTGAGCGTCAGGTACCCGGTCTTGAAGTCCGACATGAAGTCGGAGGCGGTGGAGACGACGGACGAGACGACG
CCGCAGATGACGAGGCTCCCCACCACCCCGCCGTTGCCGTACCCGATCCACGACGCGAACAGCAGGATCACCAGCTTGCT
GTACTGCGCCGCGAAGTTGGTCTCGGCCACGCCCGTGCCGTAGGCGTTGCAGAAGGCCAGCAGCGGCGCGAACACGTACG
CCGTCGCCACGTGGTAGTGCCGCACCTGGCCGTAGAGGCGCGGGATGGCGACGGTGGACAGCAGCGCCAGGGCCGCGTAG
CCGCCCATGGCCAGGGTGCCCGGGACGTGCTCCCGGAGGAACACCTGCGTCCGGCGCCGGTCGTCGAAGCTGAGCACGTT
GCGCGGCACCGCGTTGGCGTCGGAGAAGGACCGCAGCGCCTCCGCCGCCTCCAGCTGGTGGTGCCGCATCGTCTGCAGGG
TCCTCACCATGATCACCACCAGCTGGAAGATGCCGTCGCCCAGGATCATGCCTATGGCGCCAAACACCTGAAATTACATT
AGCAGTCGGATGGAGCGTGCGTGCATGTGCTCCTCGTCGAGATCTGTTGGTCGATCAGAAACTACGTACCTTGTAGCCGT
TGATGCCACGCAAACTGCCTTCCTGGAGATCGGCGGCGTACCAGCTCCCCTCTTTGGTTTCGATGTAGGGCCACATGAAT
CCCCAGGAGACGATGGCCCCGACCAGCATCGAGATGTTTATCAGGTAAGGGCTGATCATCCCGACGCCGACGTATGTCCC
GTTCAAATTGAGGTAGAAGCTGCATGCAAGTATCACACAACACAAGTAGCTTTCACTCATCATCTCTAGCATGTAGTTTT
CGGTTGGAGTGCGACATGTAGAAT-GATGGATGGATAAGTTACGTACCCGCGATTGAAGGCGTCGAGCCCAAATGAAGGG
AAGAAGGTCATGCCACAATGCGGTCCGCCGGAGTAGAACCATTGGAAGATGGACATGAGAAAGCTTCCCAGGCACGACTG
GATCATCAGAGACACTTGCTTCCTGCGTTATGAAACAGAGGCACTCCAATGCATTACTCAACCCAGCGTTATCTTATCTT
GTTGCTTGCTACTGGAGT------TGAGCAGGAGCTAGGTTTCATGCATGTGATTTAGTAGCTCCGTACGTGCTTACTTT
GCTTGCATGGCT
>SNPs
--S-----------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
-----------------------------------------------S--------------------------------
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----------------S-------------------------------------------------S----------S--
-S---------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
----------------------------S-----------------------------S---------------------
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-------------------S--------------------------------------------S---------------
S----------------------------------------------------S--------------------------
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-----------------S----S---------------------------------------------------------
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------------------------------------------------------------------S-------------
------------------------------------------------------------------S-------------
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------------------------------S-------------------------------------------------
----------------------------------------------------------------------S--S------
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------------------------S--SSSSS---------------S--------------S------------S----
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----------S---------------------------------------------------------------------
---------------------------------------------------S----------------------------
-S-------S-------------S-S-----------------------------------------------S------
-----------------S--------------------------------S--------------------------S--
------------------------------S-------------------S------S----------------------
------------------SSSSSS----------------------SSSS------------------------------
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>forward_208
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----------------------------GCACATGAAGCCTCCTTGAC--------------------------------
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>reverse_2002
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-AGTTGGAGCGCGACATGTAG-----------------------------------------------------------
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