>input_sequence_86195
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---------------------------------ATGCCGGGGAGCGCCATCAGCGGAGGCGCGGCAAGGGCGGCCGCGGT
CGCGTGGTGGCTGCAGCGCCACCAGCGACTGCCTCCGCCGGCGGACCTCCTGCCACGCAGCCTCCTTGACCGCGCGGTGG
AGCTCGCCAGCAAGACCGCCGCCGCCGCCGCCCCGGATCTGGACCAGGACCTGCCCTGCTCCCTCGGCTCGTCCTCCCTC
CCTGACCTCTGCGACGGCTTGG---TTGGTAATTAG--------------------------------------------
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>chr3A_1_TraesCS3A01G287100
TCTGGAGATGGGGAGCAGCCACCGGTGGCTGCGAGTAAGCGTGCACCACCGTCGCCATGAGCAGCTACACCGCGGGTGGT
TGCGGTCGCGGGTGTTGGGTCACCGCCACGCCACCTAGAGCGATGCCTCGCGCCGGCTGCGGTCATTGCGGCGGAGCCGA
GCGGGCGCCGCCACTCTGTCCGTGCGTTGATTATGGCGGCGACGAGATCAGGGGCTAGGGCTAAGGGTCGGGAGGAAGGG
GAGATGGGGTGGGGGCATGTGTGGTCGTGGCCTCGTGGGGGCATGTGTGCCTTCGGGAGACCGGAAGAGGAACCGTGACG
GGAGATTAAAAAAACCAGAATGGAAGGTGGGGACGTGGGGTTTGATAGTGAAAAAAATCGGTGGGATTCCTTTGATCGTG
GAGCCTAGATACAATGAACGACTCTTGTTTTATGAGCAGAGATATAATACTTTTACAATAAGATTTGTTTGTCATGGTTT
ACTTGTTAATTTCCTTAAATTTCGTTATTTTTTCCTGAAAATATATTATGTGTTTCCTAAAGCAAATTGTATTGATAGGA
GTACGCTAGGAAAGTGTTGATTTCTTTGGGGGGAAAAGTGAAGAGAAAGATAAACCAATGGGTAAGAAACCAATGGTACA
ACGGTGGTGTGAGGTGAGAGGAAATAAAACTGGACGAAAATAAAATCGGAGTATCAGGCTACCAACCGCTCCATTAGAAG
TAGAGGTAATCTGGATGAAAAACTGTTGAATGGAGTTATTTGCCTCAGAAATGTTTAAGTAGAGGGTGAA--------AA
CAGGAATTCTTTTG-GAAAAAGAAAACAGAAGCAGAAGGATAGCATTCGGCCCATACAGAAAATGTGAGCCGATAAAGGG
CCTATAGATATCTGGG-GCAGTCGCAAACCA----CTTCGTTCGGCTCTTCCTCACGTCAAGTGCTCAA-----------
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------------------------------------------------GGTCCGCTTTCCCCCACCCTCTCGGAGTATCG
CGGCGTCCTGCGAGCTGCAAGCAAGGCGATCCGATGCCGGGGAGCGCCATCAGCGGAGGCGCGGCAAGGGCGGCCGCGGT
CGCGTGGTGGCTGCAGCGCCACCAGCGACTGCCTCCGCCGGCGGACCTCCTGCCACGCAGCCTCCTTGACCGCGCGGTGG
AGCTCGCCAGCAAGACCGCCGCCGCCGCCGCCCCGGATCTGGACCAGGACCTGCCCTGCTCCCTCGGCTCGTCCTCCCTC
CCTGACCTCTGCGACGGCTTGG---TTGGTAATTAGTGCCTACGGGTCTAGCAGGAGGGTGGCGGATTCGTTGTGCGGTT
CCGCGATGTTCTCAGATTGGATAGCCAGAGCTAGACTACCCTAAATGT-----TGTTCT-AGTATGTCAATAACGGTCCC
TGGTTATGCTTGATTTTCATCCTTATGTGAAACTCATGTCTATTCAC-------ACTGTGGGTC----------------
--------------------------------------------CTTGGAATACCTGATTTCTGCC--------------
---------------------------------------AAAGCTGCTACCTAGAAATGTTCATGTTATTTCAGTACGCA
ATAAG---------------------------------------------------------------------AATTTG
ATTTGGGCTACGAAAGTATGAAAGTA--------------------TAAATGAATTGACAGAAATAATAGAGTTTGTGTT
GCATATGGGCCAGGCTCCATGCTACTCCCTCCGTTCTTAAATATAAGACCTTTTAGAGATTCCTCTATGAACTACATAGG
GATGCATATAGACATACTTTACAGTGTAGATTCACTCATTTTGCTCCGTATGTAGTCTATAGTGAAATCCCTAAAAGGTC
TTACAGGGGAGTAGTTTAGAACACATCAAATATGTGCGCTGAGCTGACCCTGCATTGTATTGAACATACTTCCTTTACAT
ATAGACTAC--ATGTGCAGTGCAGTAATTTCACTGGGAAAGGCACGATCGCTCAGAGATCTTGTAAAATGCTGCTGCTCT
TCTGTAGTGTTGGACTACTAACTGTCAGGGTTTTGTATCAGTAACATCTCTTCCTTCCTACTGGTTTTCTCTGTCAGCCT
GCCTTGCAGATAAAAA-TGGTTCTGTCAGTCTGGCTTG-AAGCAGTTCTGCCAGA-CGGTTATGCTGTGTGATGAGTGTG
GACTGTTGAGTTCAGTACTCGGCTTGTGGAGATATAGCTGGAGATCCATGGAGCAAGCCGCCACACATAAGTGAGGAGAT
GTTGGGCGCTGTTAAAG-AAAA-GGTAAGGCGTGCACTTTGCAATCATATTAGCTATACATTATTGCATTTTACATCAAA
TTCTCTCCTGCCGAGACCGCTTCTTACCGAGCACCGCGTGCTTGTCTGTCCGTGACAC
>chr3D_723
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--GAGGTAATCTGGATGAAAAACTGTTGAATGGAGTTACTTGCGTCAATCCGCAAAAAAAAATGTAGTTATTTGCGTCAA
CAGGAATTAATTCG-------------------AGAAGGATAGCATTTGGCCCGTACAGAAAATGTGAGCCCATAAAGGG
CCTATAGATATCTGGG-G---TCGCAAACCACTTCCTTCGTTCGGCTCTTCCTCACGTCAAGGCCCGC------------
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--------------------------------------------------------TTTCCCCACCCTCTCGGAGTCTCG
CGGCGTCGG-------GCAAGCAAGGCGATCCGATGCCGGGGAGCGCCATCAGCGGAGGCGCGGCAAGGGCGGCCGCGGT
CGCGTGGTGGCTGCAGCGCCACCAGCGACTGCCTCCGCCGGCGGACCTCCTGCCACGCAGCCTCCTTGACCGCGCGGTGG
AGCTCGCGAGCAAGACCGCCGCCGCCGCCGCCCCGGATCTGGACCCGGACCTGCCCTGCTCCCTCGGCTCGTCCTCCCTT
CCCGACCTCTGCGACGGCTTGG---TTGGTAATTAGTGCGTACGGATCTGGCAGGAGGGCGGCGGATTCGTTGTGCGATT
CCGCGATGTTCTCAGATTGGATAGCTAGGGCTAGACTACCCTAAATGT-----TGTTC----TATGTCAACAACGATCCC
TGGTTATGCTTGATCTTCATCCTGTTGTGAAACTCATGTCTATTCACCGAGTTAATTGAGGATC----------------
--------------------------------------------CTT---------------------------------
-----------------------TGTTTTGGTAA---AGAAAGCTGCTACCTAGAAATCCTCATGTTATTCCAGTACGCA
ATAAG---------------------------------------------------------------------AATTTG
ATTTGGGCTACGAAAGTAAGAAAAAAATATATAGGTGCGTCAACGATAAATGAATTGACTGAAATAATAGGGTTTGTGTT
GCATATGGGCCAGGCTCCATCC----------------------------------------------------------
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-----------TAGTATAGAACACATCAAATATGTGCACTGAGCTGACCCTGCATTGTGTTGAACATACTTCCTTTACAT
ATAGACT------GTGCAGTGCAGTAATT--GCTGGAAACGGCACAATCGCTTGGAAATCTTGTAAAATGCTCCAGCTCT
TCTGTAGTGTTGGT-------------------------------------------CTACTGGTTTTCTCTGCCAGCCT
GCCTTGCAGATAAAAA-TGGTTCTGTCAATCTGGCTTGTAAGCAGTTCTACCAGACCGGTTATG----------------
-----TCAAGTTCAGTACTCGGCTTGTGGAGATATAGCTGGAGATCCATGGAGCAAGCTGCCACACATAAGTGAGGAGAT
GTAGGGCGCTGAT---AAAAAA-GGTAAGATGTGCACTTTGCAATCACATTAGCTATACATAATTGCATTTTACATCAAA
TTCTCTCCTGCCTAGACCGCTTCTTACCGAGCACCACGTGCTCGTCTGTCCGTGACAC
>chr3B_723
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--GAGGTAATCTGGATGAAAAACTGTTGAATGGAGTTATTTGCATCAGAAATGTTCAAGTAGAGGGTAAA--------AA
CAGGAATTCATTCGAGAAAAAACAAACAGAAGCAGAAGGATAGCATTTGGCCCATACAGAAAATGTGAGCCCACAAAGGG
GCAGTC---------G-G---TCGCAAACCACTTC--TCGTTCGGCTTTTCCTCACATTAAGGCTATAACTGGCCAAATG
GGCCGGTTTTTTTGGGCCGGCCCGTGAGCACGCCGGCATGGCCCGCCTTGGGCCAGGCACGGCACGGGCTAAACGGGCCG
GGCCAGGCACGCGGCACGCCTTGGGCCGTGCCTGGGCCTGGAGGCTAGGCACGCGGGCCGGCACGGCACGACCCGATTAA
GTTTTTTTTTATTTTTTTATATATCTATATATAGCCCAATATGTAAAAATAGGCTAAAAATGCTCAGTGTGTCAAATAAT
AGGCTGAAAATATGCGGCCCACCGTGCTAAATGGGCCAACGTGCTGGCCCGTTTACTAATTGAGCCGTGCCTGGGCCTAG
GGGCGCAGCACGCAGGCCGGCACGGCACGGCCCGTATAGTAATCGTGCCCTTGCGGGCCGTGCCGGGCCAGGCACGATTA
TAATGGGCCGGGTCGTGCCGGGCCGGGCCGGCCCGTTTGGCCAGGTATGGCCCGCTTTCCCCCACCCTCTCGGAGTATCG
CGGCATCCG-------GGAAGCAATGCGATACGATGCCGGGGAGCGCCATCAGCGGAGGCGCGGCAAGGGCGGCCGCGGT
CGCGTGGTGGCTGCAGCGCCACCAGCGACTGCCTCCGCCGGCGGACCTCCTGCCACGCAGCCTCCTTGACCGCGCGGTGG
AGCTCGCCAGCAAGACCGCCGCCGCCGTCGCCCCAGATTTGGACCCGGACCTGCCCTGCTCACTCGGCTCGTCCTCCCTT
CCTGACCTCTGCGACGGCTTGG---TTGGTAATTAGTG-GTACGGATCTGGCAGGAGGGTTGCGGATTCGTTGTGCGATT
CCGGGATGTTCTCAGATTGGATAGCTAC-GCAAGACTACCCGAAATGT-----TGTTCTAAGTATGTCAATAACGGTCCC
TGGTTATGCTTGATTT-CATCCTTGTTTGAAATTCATGTCTATTCACGGAGTTAACTGAGGATC----------------
--------------------------------------------CTTGGAATACCTGATGTCTGCCTTTGTCTTTAACCC
ATGTCTTCCAGCTATGTATGATTTGTTTTGGTAAAAAAGAAAGCTGCTACCTAGAAATTCTCATGGTATTCTAGTACGTA
AGTACTCCCTCCGTCCCATAATATAAGAGTGTAGTGTCAAAAACGCTCTTATATTATGGGACGGAGGGAGTAGCAATTTG
ATTTGGGCTATTAAAGTAAGAAATTA----ATAGGTCTATCAATGATAAATGGATTGTCTGAAATAATAGAGTTTGTGTT
GCATATGGGCCAGGCTTGATCC----------------------------------------------------------
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-----------TAGCTTAGAACACATCAAATATGTTCGCTGGACTGACGCTGCATTGTACTGAACATACTTACTTTACAT
ATAGACTTCATT---------------TT--GCAGAAAATGGTGCAATCACTCAAAAATCTTGTAAAATGCTCATGCTCT
TCTGTAGTGTTGGACTACCAACTGTCAGGGTTT--------------------CTTCCTACTGGTTTTCTCTATCAGCCT
GTCTTGCAGATAAAAA-CGGTTCTGTCAATCTGGCTTG-AAGCAGTTCTACCAGACCGGTTATGCCGTGTGATGAGTGTG
GACTGTCAAGTTCAGTACTCGGCTTGTGGAGATATAGCTGGAGATCCATGGAGCAAGCTGCTACACATAAGTGAGGAGAT
GTAGGGCATTGATGGAAAAAAA-GGTAAGACGTGCACTTTGCAATCACATTAGCTATACATTATTGCATTTTACATCAAA
TCCTGTCCTGCCTAGACCGTTTCTTACCAAGCACCGCTTGCTTGTCTGTCCGCGACAC
>chr3B_770
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-------------------------------------------------AATGTTCAAGTAGAGGGTAAA--------AA
CAGGAATTCATTCG-GGGGGG--AAACAGAAGCAGAAGGATAGCATTTGGCCCATACAGAAAATGTGAGCCCACAAAGGG
CCTATAGATCTGGGGCAG---TCGCAAACCACTTCCTTCGTTTGGCTCATCCTCACGTCAA-------------------
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------------------------------------------------GGCCCGCTTTCCCCCACCCTCTCGGAGTATCG
CGGCGTCCG-------GGAAGCAAGGCGATACGATGCCGGGGAGCGCCATCAGCGGAGGCGCGGCAAGGGCGGCCGTGGT
CGCGTGGTGGCTGCAGCGCCACCAGCGACTGCCTCCGCCGGCGGACCTCCTGCCACGCAGCCTCCTTGACCGCGCGGTGG
AGCTCGCCAGCAAGACCGCCGCCGCCGCCGCCCCGGAGCTGGACCCGGACCTGCCCTGCTCCCTCGGCTCGTCCTCCCTC
CCTGACCTCTGCGACGACTTATTGATTGGTAATTAGTACGTACGGATCTGGCAGGAGGGCGGCGGATTCGTTGTGCGATT
CCGCGATGTTCTCAGATTGGATAGCCAGAGCTAGACTACCCTAAATGTAATGTTGTTCT-AGCATGTCAATAACGGTCCC
TGGTTATGCTTGATTCCG-TCCTTGTTTGAAACTCATGTCTATTCACCGAGTTAACTGTGGGTCCTTGGAATACCTGATT
TCTGCCTATGTCTTTATATAACCCATA-----------TGTATACTT---------------------------------
-----------------------TGTTTTGGTAA---AGAAAGCTGCTACCTAGAAATTCTCATGTTATTCCAGTACGCA
ATACG---------------------------------------------------------------------AATTTG
ATTTGGGCTACGAAAGTATGAAAATATAC-ATAGGTGTGTCAACGATAAATGAATTGACTGAAACAATAGAGTTTGTGTT
GCATATGGGCCAGGCTCCATCC----------------------------------------------------------
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-----------TAGT----------TCAAGTATGTGCGCTG-----ACCCTGCATTGTATTGAACGTACTTCCTTTACAT
ATAGACTATATATGTGCAGTGCGGTAATT--GCTGGAAATGGCACAATCGCTCAGAAATCTTGTAAAATGCTCCAGCTCT
TCTGTAGTGTTGGACTACTAACTGTCAGGGTTTTGTATCAGTAACATCTCTTCCTTCCTACTGGTTTTCTCTGCCAGCCT
GCCTTGCAGATAAAAA-TGTTTCTGTCAATCTGGCTTGTAAGCAGTTCTACCAGACCGGTTATGCCGTGTGATGAGTGTG
GACTGTCAAGTTCAGTACTCGGCTTGTGGGGATATAGCTGGAGATCCATGGAGCAAGCTGCTACACATAAGTGAGGAGAT
GTAGGGCATTGAT--AAAAAAA-GGTAAGACGTGCACTTTGTAATCACATTAGGTATACATTATCGCATTTTACATCAAA
TCCTGTCCTGCCTAGACCTCTTCTTACCGAGCACCGCGTGCTTGTCTGTCCGTGACAC
>chr3A_1004
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------------------------------------CCGGGAAGCGCCATCAGCGGAGGCGCGGCAAGGGCGGCCGCGGT
CGCGTGGTGGCTACAGCGCCACCAGCGACTGCCTCCGCCGGCGGACCTCCTGCCACGCAGCCTCCTTGACCACGCGGTGG
AGCTCGCCAGCAAGACCGCCGCCGCCGCCGCCCCGGATCTGGACCAGGACCTGCCCTGCTCCCTCGGCTCGTCCTCCCTC
CCTGACCTCTGCGACGGCTTGG---TTGGTAATTAGTGCCTACGGGTCTAGCAGGAGGGTGGCGGATTCGTTGTGCGGTT
CCGCGATGTTCTCAGATTGGATAGCCAGAGCTAGACTACCCTAAATGT-----TGTTCT-AGTATGTCAATAACGGTCCC
TGGTTATGCTTGATTTTCATCCTTATGTGAAACTCATGTCTATTCACCGAGTTAATTGAGGATCCTTGGAATACCTGATT
TCTGCCTGC--CTTTATATAACCCATGTGTTCCAGCTCTGTATACTT---------------------------------
-----------------------TGTTTTGGTAA---AGAAAGCTGCTACCTAGAAATTCTCATGCTATTCCAGTACGCA
ATAAG---------------------------------------------------------------------AAGTTG
ATTTGGGCTACGAAAGTATGAAAATATAC-ATAGGTGTGTCAACGATAAATGAATTGACTGAAATAATAGAGTTTGTGTT
GCATATGGGCCAGGCTCCATCC----------------------------------------------------------
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-----------TAGTTTAGAACACATCAAATATGTGCGCTGAGCTGACCCTGCATTGTATTGAACATAATTCCTTTACAT
ATAGACTAC--ATGCGCAGTGCGGTAATTTCGCTGGGAAAGACACAATTGCTCAGAAATCTTGTAAAATGCTCCAGCGCT
TCTGTAGTGTTGGACTACTAACTGCCAGGGTTTTGTATCAGTAACATCTCTTCCTTCCTACTGGTTTTCTCTGTCAGCCT
GCCTTGCAGATAAAAAATGGTTCTGTCAATCTGGCTTGTAAGCAGTTCTACCAGACCGGTTATGCCGTGTGATGAGTGTG
GACTGTCAAGTTCAGTACCCGGCTTGTGGAGATATAGCTGGAGATCCATGGAGCAAGCTGCTACACACAAGTGAGGAGAT
GCAGGGCATTGAC--GAAAAAAGGGTAAGACGTGCACTTTGCAATCGCATTAGCTATACATTATTGCATTTTACATCAAA
TCCTCTCCTGCCTAGACCGCTTCTTACCAAGCACCGCGTGCTCGTCTGTCCGTGACAC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS-----------------------------------------S-----------S-----------S------------
---------S--S--------SS------------------------S-----------------------S--------
------------------SSS-----------------------------------------SS-SS-------------
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--------------------------------------------------S-----------------------------
--------SSSSSSSS----------------------------------------------------------------
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-----------------------------------------------------------S--------------------
----------------------------------------------------------SS----------S---------
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-----------------------S-----------------------------------S--------------------
--------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---------------------------------------------------------------------
-------------------------------S-------------S----------S---------------S-------
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----------------------------S--------------------S---------------S--------------
------SS--------------------------------------------------S---------------------
--S--------S-SS-S------------S-----------------S--------------------------------
------------S---------------------------------------------
>forward_197
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-----------------GTCCGTGCGTTGATTATGGC-------------------------------------------
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>reverse_1980
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-----------------------------------------------------------TTCTGCCAAAGCTGCTACCT-
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