>input_sequence_86194
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------------ATGTTCCAGAAGCCTGACATGCGGAGGCCCATGTTCGTGACTAAGGCCATGCAGAAGGTGATCATCAA
GGTGGACGAGGCAGGGACCGAGGCCGCTTCGATCATGCGCGGGTTTTGTGGTGGTGGTCTGCCGCCGGACATGGTTCCGT
TTGTTGCCGACCACCCGTTCAGTTTCCTCATCATGGAGGAGCGGTCTGGAGTGATCGTTTTCGCCGGCCATGTCCTTGAC
CCTACCAAGTAA--------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G583800
CGGGGGCGCGCGGTGCCACGGAGGCCCAGCTGCTCAGCTTCCACGGCGCGCCGTCGGCGGCTGATCTGGCCGCCTTCGGG
CGGCGCATGGCGGATACCGTCCTCGCCGACCAGATGGAGGATGAGAGCGCCCCCCGCGTGCTCTTCGGCGGCGGTGTCTG
GGTCGACGCTTCTTGCGGCGGGCTCAAGAAAGCCTTCCGGGACGTTGCCACCAAGTCCTACAAATCGCAGGCTCGCACCG
TCAACTTTGCCGATGATGTAAATCCTATCCTTACCATTTTG-----------------------------TTTCGTTCGT
CAATTCTATCTTGTGTGGAATTTCTGCATACCCTTAGATCCATTATAGTATTATA----------------TACAATTTC
ATTTGCCAATATATATATCTGCAGCCGGAGGAAGCAGTGGAGATCATCAACGACTGGGTGAAAAAGGCCACGAACAACCT
CATCAACTCCCTCTTTTATCCGAGCGACATCAACGCTGACACCGCCCTCGTGGTCGCCACCGCGGTCTACTTCAAAGGCC
TGTGGCGCAATCCGTTCCACCGGGCCAACACGTCGCCTC-------GCCAGTTTCACCTTCTCGACGGCAGCTGCGTCAA
GGCAAAGTTCATGAGCAAGTCTTCTCAATCCCAGTTTATCTCTTGCTTGGATGGTTTCAAGGTTCTCAAGCTTCCCTATC
TGAGCCCATGGAAAACCAAGGCAGATGCCGCCCACGCAGCTCCTCTCAAGCGTCGCGGCGGTCCAGGCGCCGCTGCAGCT
GTCGACGCTGATGACACTCAGTTCAGCATGTTTTTCTTCCTCCCCGATGAACAACTCGGCATCGCGAACATGGTGGACAT
GATCACTGCTGCGCCAAGCTACCTGCAGAGCATCCTACCCAAGACGATGGTGGAGAATGTCCAGGTTACGCTGCCCAAGT
TTGAGATCTCCTTTGACTGGGACCTTGGAAAGGACCTCCAACGGCTGGGGCTCTCGCTGCCGTTCTCTCGCGACGTGGGT
GACTTGCGAGGCATGTTCCAGAAGCCTGACATGCGGAGGCCCATGTTCGTGACTAAGGCCATGCAGAAGGTGATCATCAA
GGTGGACGAGGCAGGGACCGAGGCCGCTTCGATCATGCGCGGGTTTTGTGGTGGTGGTCTGCCGCCGGACATGGTTCCGT
TTGTTGCCGACCACCCGTTCAGTTTCCTCATCATGGAGGAGCGGTCTGGAGTGATCGTTTTCGCCGGCCATGTCCTTGAC
CCTACCAAGTAATCGGCGTTAGCATCAAGATTTCAGAAACTACCAGCTGCATGGGAGCTTGGCATGATGGAAATATTTTG
CTCCTTTCAATGCTACCC-TATAGTGTATCGAATTGATTTCAGTATTACTACTGAGTACTGCAGCATTGAACTCTACTAT
GTAGTAATCCCGGAACATGTTTCAGTATCGTTTCTCTTATTATTACTAGTATGTTTTCTTATATATCTTGGTTATTTTTG
GAGAAAAAAGCATCAAATAGCT-GAGTGCATTACAATTTGAG--AAAATAGGAGACACTACAGTGAGTTAATCTTTGAAA
TGAAGTAAAAGAAAAAAAAGGTCCATAGATAATTACTATCAGTCATCTCCTTAAATTTACTTCATTTCCTCATGATAATC
CCCTTTACTTTCTTTACGTTAAGAATGTAGTGACGTAGATCCAAA-----TGTAATGCACTAGTATATCGTAGTAGAAAA
ATATCTTGAAACCCTATGGAGCAAGGCACTCGTTTTGGTTTCCCTAATAATTCAGCTGCATGCTATTGCTCTTGACTATA
TTGGTTCGTCATTTTTCTGCAACTTTGTACATACTTATTTATTTCCGTGAACAACTTAAAAGTTGAATTTTCTAGTTCGT
TACATGTGCAAATG--------------------TTTGTCGTTATGCTGGTTTCTGTAGTTAGAAATCTATGGGGTTGCA
ATTGCA-TTAAGAAAATCTTAATATTGATCTCCGAAACAATTTAAACTAGATAGGCACAATAGTTCTGGTAGAAAAATAT
TGTGCTTGTGGCGCTGCAAGAGGCCGTTCCTTCTGTATTTTTTGGGGTATGTTCTTGAGGT-TTGCCGCGATAGAAGTGG
GAACAAAGATTGAGAAGGAAGATATGTAGAAGCTGCTGTGGCGTGCTATTTGCAGGTGGCCACCTTGGTTGT--------
--------GGAAGCACAGAGCTGGAGCTTGCTGATCAGGTCGAGCTCATCAGCAGTGCAAGAATCCAATTGACGTATGCT
TGTAATGCATTGCAAGCTT
>chr2B_1
CGGGGGCGCGCGGTGCCACGGAGGCCCAGCTGCTCAGCTTCCTCGGCGCGCCGTCGGCGGCTGATCTGGCCGCCTTCGTG
CGGCGCGTGGCGGAAACCGTCCTCGCCGACCAGATGGAGGACGAGAGCGCCCCCTGCGTGCTCTTCGGCGGCGGTGTCTG
GGTCGACGCTTCCTGCGGCGGGCTCAAGAAAGCGTTCCGGGATGTTGCCACCAAGTCCTACAAATCCCAGGCTCGCACCG
TCAACTTCGCCGACGCTGTAAGTCCATGCTACTACTAATCCCAGGCAGGCCTACACTACCATATTGCATATTTTGTTCTT
TAATTCGATCTCATT--GAATTTGTGCATACCCTTTGATCCATCATATTTAATTTATAATGAGATCTCTATTAAAATTTC
TTTTGCCG-----------TGCAGCCGGAGGAAGCAGTGGAGATCATGAACGACTGGGTGAAAAAGGCCACCAACAACCT
CATCAACTCCCTCTTTTCTCCAAGCGACATCAAAGCTGACACCGCCCTCGTGGTCGCCAACGCGGTCTACTTCAAAGGCC
TGTGGCGCAATCCGTTCCACCGGGCCAACACGGCGCCTCGCCACTCGCCAGTTTCACCTTCTCGACGGCAGCTGCGTCAA
GGCAAAGTTCATGAGCAAGTATTCTCAATCCCAGTTTATCTCTTGCGTGGATGGTTTCAAGGTGCTCAAGCTTCCCTATC
TGGGCCCATGGAAAACCAAGGCAGATGCCGCCCACGCAGCTCCTTTCAAGCGTCGCCGCGGTCCAGGCGCCGCTGCAGCT
GTCGACGCTGATGACACTCAGTTCAGCATGTTTTTCTTCCTCCCCGATGAACAACTAGGCATCGCGAACATGGTGGACAT
GATCACCGCTGCGCCAAGCTACCTGCAGAGCATCCTACCCAAGACGATGGTGGTGAATGTCCAGGTTACGCTGCCCAAGT
TTGAGATCTCCTTTGACTGGGACCTTGGAAAGGACCTCCAACGGCTGGGGCTCTCGCTGCCGTTCTCTCGCGACGTGGGT
GACTTGCGAGGCATGTTCCAGAAGCCTGACATGCGGAGGCCCATGTTCGTGACTAAGGCCATGCAGAAGGTGATCATCAA
GGTGGACGAGGCAGGGACCGAGGCTGCTTCGATCATGCGCGGGTTTTCTGGTGGTGGTCTGCCGCCGGACATGGTTCCGT
TTGTTGCCGACCACCCGTTT-GTTTCCTCATCATGGAGGAGCGGTCTGGAGTGATCGTTTTCGCGGGCCATGTCCTTGAC
CCTACCAAGTAATCGGCATTAGAATCAAGATTTCAGAAACTACCAGCTGCATGGGAGCTTGGCATGATGGAAACATTTTG
CTCCTTTCAGTGCTACCAATATAGTATATCGTATTGATTTCAGTATTACTACTTACTACTGCAGTATTGAACTCTACTAT
GTAATCCCA---GAACATGTTTCAGTATCGTTTCTCTGATTATTACTAGTACGTCTTCT----TATCTTGGTTATTTTTG
GAGAAAAATGCATCAAATAGCTTGAGTGTATTGCAATTTTGAGAAAAATTGAAGACACCACAATGAGTTACTCTTTGGAA
TATGGT--------------------------------------ATCTCCTTTAGTTCATTTCATTTCCTCATGATACGC
TACTTTACTTTCTTTACATTAAGAGTGTAGTAACATAGAACCAAATACTGTGTAATGCACTAGTATATAGTAGTAGAAAA
ATATCTTGAAAGCCTACGGAGTAAGGCACTCGTTTTGGTTTTGGTAACAATTCAGCTGCATGCTATTGCTCTTGACCATT
TGG------CATTTTTCTGCAGCTTTCTACATATTTATTTCTTTCCGTGAACTAGTTAAAAGTTGTATTTTTTAGTTCGT
TACATGTAGTGAGAGACATTTACATTGATATTGATTTGTCGTTATGCTGGGTTTTATAGTTAGAAATCGACGATGTTGCA
AATCCTTTTAAGAAAACCTTGATATTGATCTCCGAAACAATAGTTCTGGAC------------TTCTGGTAGATAAATAT
TGTGTTGGTGGCGCTGCAAGAGGCCGTTCGTTCTCTTTTTCTTTGA-TATGTTCTTGAGGTCTTGCCGCGATAGAAGTGG
GAAGAAAGATTGAGAATGAGGATAGGTACAAGCTGCTATGGGGTGCTATTTGCAGGAGGCCACCTTGGTGGTGGATGAAG
AGGGGGCGGGAAGCACAGAGCTGGAGCTTGCTTATCGGGCCGAGCTCATCATCAGTGCAAG-------------------
-------------------
>SNPs
------------------------------------------S-----------------------------------S-
------S-------S--------------------------S------------S-------------------------
------------S--------------------S--------S-----------------------S-------------
-------S-----S-S-----S---SSS-SSSSS-SSS-SS--------------------------------S----S-
S-----S----SS-SSS------S-----------S-------S---S-SSSS-S------------------S------
S------SSSSSSSSSSSS----------------------------S-----------------------S--------
-----------------S---S-----------S-------------------------S--------------------
--------------------------------S-----------------------------------------------
--------------------S-------------------------S----------------S----------------
--S-----------------------------------------S-----------S-----------------------
--------------------------------------------------------S-----------------------
------S----------------------------------------------S--------------------------
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------------------------S----------------------S--------------------------------
-------------------SS-------------------------------------------S---------------
-----------------S----S--------------------------------------------------S------
---------S-------S-------S-----S---------------------S-S--------S---------------
---S-SSSSSSS-------------------------S-------------S--S----SSSS-----------------
--------S-------------------S---S------SSS-------S-S------S---S-------S------S--
-SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-S--S-S-----------------SS-
SS---------------S------S------S--S----S----------------------------S-----------
-----------S----S----S-------------------SSS---S----------------------------S--S
-S-SSSSSS------------S----S------S------S-----------S-S----------S-----S--------
-------SSSS-SS------------------------------------S--S-S------------S-S-SS------
-S-S-S----------S---S--------------------SSSSSSSSSSSSSSSSSSSSSS----------S------
----S-S----------------------S----S-S---S--S-SS---------------------------------
---S------------S--S----S---S--------S---S--------------S------------S----------
--------------------------------S---S--S-----------S---------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS
>forward_203
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-----------------------TCAAGAAAGCCTTCCGGGAC-------------------------------------
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>reverse_1772
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-----------CCCTATGGAGCAAGGCACTC-------------------------------------------------
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