>input_sequence_86183
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------------------------------------------------------------------------ATGACAAA
GTGCCTCGCCGTCGCGCTTCTGCTACTGGTGGCGCTCGCGTACTGTGACGGCAGGGAGCTGAACCAGAAGGATCAGGCAC
TAGCAACGCCACGCGGTGCCGGTGCCGGTGGTG---CCGTCGACGAGTCGAAGGT---------GCTGGGGCTGCCAGAC
CTGCCGGTCGTCGGAACCGTTACCGGTACCAGCACCATTACCGGCCCGCTGGTGGTGCTTCCA---------GGGATCCC
TGCTCA---C----CCATGA------------------------------------------------------------
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>chr2A_1_TraesCS2A01G461100
ACCTGCCTTTGTCCCTCACATAAGAAAACAGGGCTGGCGCAGTGGTGGCGATCGAGTGCCCACCCGGTAGCCAGTTGTCC
ACCCAGAATTTGGCCTCATTTCCATCTCCAAGAGAGATCTTGCAGGCCGCCGAGAACAGCTCTGCAACCTCCTTCTCCGT
CGTATCCTTGAAATAGCACCAGGGTCTCTTATCTTCATCCCATTGTTTCCACAGCCAGCGACAGTGAAGAGCAAGACCAA
AGTTCCTAAGATTAAGGATGCCGAGCCCACCAAGTACAGAATCTTTTAATAACTAAGTAAGGCACATTTTGATGTAAATA
TTACCTTGCTTTTGCTGTTGATGGCACTGCACTTATCAGCAGTTGCACCGTGTCTAAAATTGAC-GCAGCGGCATCCGAG
AGTACCTATCAGAGATGGCCAAATATAGAACG--AAACGTCCCTGTCAGTCGAAGCTTATCTACAGCAAG---GCAACGT
TCTAGTTGCAGATCACAAAGATCCTAAAACCAGCGCCGCAAATTTGCAAGAAAAAACAACTAGGCCCGCCACATATAAGA
TCAGGCACAGTACTGTCT----CCAACCTTGAACGGAAAAAGATCTGCTGATGAACGGAACCAATAATAATAGGCTC---
--------TAATTCGGCAGTGGCACCTTGACTA---------CTCGACGACGATAGG-ACCTGTCGGCACGGATTCACGG
GCAATAA---ATCCACCCGCCCCATTCCAATCCAC--GGACGTGCACATGCA-------TTCCGCCATACCCATACATTC
CTCTCTCTCTCCCTTGCCCGTGCCTGACGCACCTGACCTCTAGTCCTCTACCCATTCTACAAATCCTCCTCTCCTGCACC
GACGAGGCACG---------GCCACCCCG--------TGCAGCTCGCCTATAA------GATGCAACGTACACGA-GCTA
AGCCTAAGCTCACTCAAAC------ACAGCCACACAA--------CACTATCACTCAAACAAAGCCGCACAAGTTAGACT
ATCTCCTTGCCAGTACTATTACAAGAG-------------------------------CCTCCCAGTTAACAATGACAAA
GTGCCTCGCCGTCGCGCTTCTGCTACTGGTGGCGCTCGCGTACTGTGACGGCAGGGAGCTGAACCAGAAGGATCAGGCAC
TAGCAACGCCACGCGGTGCCGGTGCCGGTGGTG---CCGTCGACGAGTCGAAGGT---------GCTGGGGCTGCCAGAC
CTGCCGGTCGTCGGAACCGTTACCGGTACCAGCACCATTACCGGCCCGCTGGTGGTGCTTCCA---------GGGATCCC
TGCTCA---C----CCATGATCATCTCGAGTTCATGTGC----TTACA-----AG---ATGAAGCTGTCCTTGTGGCTTC
AGACT---T-TAGGCTCTAGCTAG-CACCGTCCGGAGGAAAAACGCTGGCGTTTCGCTCATGCCCATG----CTCCTTAA
TGGGCGTCTGTATCAACCATCCTGTCATCTGTATTTCTTTGCAGTTCTTTGTTCCAGTAATTTTCG-TTCCTTGATGTGC
CACATGTATAATCAACGTAATAAATGCTGGAATTTAGTCTATTTTGGGCAACCCAATAACTATTTCAAAAATTCCTAATA
AATCCTAGAGGCCCACTTAGCCCATTTGTGCAAGGCAAGGGATACTACTAAAGTTTAGTCCCACATGGCTAGTTGAGTGG
GAGTTGGACCTCCTTATAAGGGAGGTTCTTTTCACACTTATACGAGCATGAGAACAAGAGGGATATCCACGCCGCTCCTC
CGCCACCCGCCTCGTCACGCCGCGCCGCGCCGCGCCGTGGGTTGCGGGAATGAGCCGATATCTAAATTTTGCCACGCACT
ATGGGTATATGAAAGGTCACACGGCCTCCGAAACCGCACCACTTTGAGTCTTGTACGGGAGAAGGGTGATACGATTTTTG
GGGAGCGCTCTGCGCGACTACTGACTTCTTCATCACGGACTCCGACGACTTCTTCCCCGATGTCGACAACCTCATTGACG
ACATGGCTGGAGAGGATGTCGACCCCAAGTCCAGTGCTTCCGTTGCTGCTACAGTTCTCGCCTCTAGTTTCTGCCCTACA
TATGTTAGATTCTATGTCGTATAAGCAGCTTCATCTAGTGTCTGTTCTAGATGTGTTTAGCACAAGTTCATATATGCAGA
CGATGTTTACCTTCTCTTTGTCAGATTGCATGACTTGCTTTATATTTCCTATATTAGTCATGCTTTATCTAGTATTTCCA
TTAGCAAAATTATTTGGTAAATTGCTCATATTTCCAACAATCCAAAAACCTTATGATAGGTAATTTACACCAAGTGGTTT
TG
>chr2B_334
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-------------GCTGTTGATGGCACTGCACTTGTCAGCACTTGTACGGTATCTTAAATGGAATGCAGCGGCATCCGAG
AGTACCTGTCAGAGACGGCCAAATACGAGAACGAAAACGAACCTGTCAGTCAAAGCTTATCTACAGCAAGGCAGCAACGT
TCCACTTGCAGATCACAAAGATCCTAAA-CCAGCGACGCAAATTTGCAGGAAAAAACAGCTAGGCCAGCC-CATCTAGGA
TCAGGAGCAGTTCCACGAGGCCCCGACCTTGATCGGGAAAATATCTGCTGATGAAAGGAAACC--AATAATAGGCTCTCC
TAATTCCATAATTCGACAGCGGCACCTTGACTAGTTGGCCTTCTCGACGGCGATAGC-TCCAGTCGGCACGGATTCACGG
GCAAT-A---ATCCATCCGCCTCATTCCAATCCAC--CGACG------TGCA-------TTCCGCTATACCCATACCTCT
C---------CCCTTGCCCGTGACCAGCCCGCCTGTCGCA----CCTCTACCATTC-----AATCTTCCTCTCCTGCGCC
AACGACGCACG---------GCCACCCCGCCACCCCGTCCAGCTCGCCTATAA------GAAGCAGCGTAGACGATGCTA
AGCCTAAGCTCACTCCAAC------ACAGCCACCCAA--------CACTATC------ACAAAGCCGCACAAGCTAGACT
ATCTCCTCAGTAGAAC------------TACCGGAGCCTCCCAGTTAGCAAT--------------------ATGGCAAA
GTGCCTCGCCGTCGCGCTCCTCCTACTGGTGGCGCTCGCGTACTGCGACGGGAGGGAGCTGAACCAGAAGGATCAGGCAC
TAGCAACGGCACGCGGTGCCGGTGCTGGTGGTG---CTGTCGACGAGTCCAAAGC---------ACTAGGGCTGCCAGAC
CTGCCGCTTGTCGGAACCGTTACCGGTACCAGCACCATTACCGGCCCGCTGGTGGTGCTTCCT---------GGGATCCC
TGCTCA---C----CCATGATCATCTCGTGTTCATGTGC----TTACA-----AG---ATGAAGCTCACCTTGTGGCTTT
AGACT---T-TAGGCTGTAGCTAG-CACCGTCCGGAGGAAAAATGCCGGTGTTTCCCTCATGTCCATG----CTCCTTAA
TGGGCGTCTGTATCAACCAGCCTGTCATCTGTATTTCTTTGCAGTTCTTTGTTCCAGTAGTTTTCG-TTCCTTGATGTGC
CACATGTATCATCAAAGTAATAAAT-------------------------------------------------------
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>chr2B_650
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------------------------------CTT---------CTCGACGGCGATGGGAACCAGTCGGCACGGATTCACGG
ACAAT-ATAGATCCATCCGCCCCATTCCAACACCGATCGACG------TGCACATGCATTTCCGCCATACCCATACATTC
CTCTCTCTCCC------------------------TCGCA----CCTCTACCCATTCTAT----CCTAATCTCCTGCGCC
AACGACGCGCGGCCACCCTCGCCAACCCG--------TGCAGCGTGCCTATAA------GAAGCAGCGTAGACGATGCTA
AGCCCAAGCTCACTCAAACACAGGCACAGCCACCCAA--------CACTATC------ACAAAGCCGCACAAGCTAGACA
ATCTCCTCATAAGTGC------------TAGCGGAGCCTCCCAGCTAGCAAT--------------------ATGGCAAA
GTGCCTCGCCGTCGCCCTCCTGCTGCTGCTGGTGCTCGCGTACTGCGACGGGAGGGAGCTAAACCAGAAGGACCAGGCAC
TCGCAACGGCACGCGGTGCCGGGGCCGCCGGTGGTGGCGTCGGCGAGGAGAAGAT---------TTTGGGGTTGCCTGAC
CTGCCGCCTGTGGGAACCGTTACCGGTACCAGCACCACTAACGGCCCGCTGGTGGCGCTTCCTGCCCTTCCCGGGATCCC
TGCTCA---C----CCATGATCACCTCTAGTTCATGTGCTGGCTTACA-----AG---ATGAAGCTCACCTCGTGACTTT
ACACT---TCTAGGCTCTAGCTTAACATCGCCCGGAAGGCCAACACCGGCGTTTCGCTCATGTCCATGTTCCTTCCTTAA
TGGGCGTCTGTATCATCTATCCCCG--TCTGTATTTCTTTTCAGTTCA-TGTTCTAGTATTTTTCGTTTCCTTGATGTGC
TACATGTAT-----------------------------------------------------------------------
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>chr2B_802
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--------------------------------------------CCTCTACCCATCCTAC----CCTCCTCTCCTGCGCC
AACGACGAACG---------GCCACCCCG--------TGCAGCTCGCCTATAA------GAAGCAACGTACGCGATGCTA
AGAAATTACCTCCTCAAAC------ACAGCCACACAA-----------------------------GCTAAAGCAAGACT
GTCTCCTCAGTAGTAT-----------------------------CAGAAGTTCAGAACCTCCCAGTTAGCAATGGCGAA
GTGTCTCGCCGTCGCGCTGCTGTTGGTGGTGGTGCTCGCGTCCTGTGACGGGAGGGAGCTGAGCCAGAAGGACGGCGCAC
TGGGAGCGACACGCGGTGCCGGCGTCGCCG---------------AGTCCAAGGCTTCTTCGGGTTCGGGGTTGCCAGAC
CTGCCGGTGGTGGGAACCGGTACCGGAACCAGTACCATTAACGGCCCGCTGGTGGTGGTTCCT---------GGGGTCCC
TGTCCATCCATGAACCATGATCATCTCTAGTTCATGAGCTGACTTACATACATACGAGCTGAAGCTGAACTTGTGGGTTT
TAGACTTCT-----ATATAGCTGG-CATCGCCCTGAAGAAAAGCACCGGCGTCTCGCTCATGTCCACG----TTCCTAAA
TGAGTGTCTGTATC------------------------------------------------------------------
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>chr2B_844
GCACCGCC------------------------------------------------------------------------
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------------------------ACCCG--------TGCAGCTCGCCTATAA------GAAGCAATGTACACGAAGCTA
AGCCTAAGC---------------------CACACAACATACTATCACTCAT------ACACAGCCACACAAGCTAGACT
CTCCT-----CAGTAGTATTATCAGAG-------------------------------ACTCCGAGCTAGCAATGGCAAA
GTGCCTCGCTGTCGCGCTACTGCTACTGGTGGTGCTCGCGCACTGCGACGGGAGGGAGCTGAATGAGAAGGACCGCGCAC
TTGCAGCGATACGCGGTGCCGGTGCTGG---------CGTCGGCGAGTCGAAGAT---------TTTGGGGCTGCCAGAC
TTGCCGGTTGTGGGAACCACTACCGGTACCAGTACCATTAACGGCCCGCTGGTGGTGATTCCG---------GGGATCCC
TGCTCA---C----CCATGATCATCTCTAGTTCATGTGCTGGCTAACATACATACAAGCTTCAGCCGAACTTGTGGCTTA
AGACT---T-----CTATAGTTAG-CACCACCCGGAAGAAAAACACCGGCTTTTCGCTCATGTTCATG----TTGCTTAA
TGAGCGTTGTATC-------------------------------------------------------------------
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>chr2B_849
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--------------------GCCACCCCG--------TGCAACTCACCTATAAGAG------GCAGAGTACACGATGCTA
AGCCCAAGCTCACTCAAAC------ACAGCCACACAA--------CACTA-----------------------------T
CTCCT-----CTGTAGTAGTACTACTATTACCAGAGCCG-------------------CCTCCCAGTTAGCAATGGCAAA
GTGTCTCGCCGTCGCGCTCCTGCTGCTGGTGGTGCTCGCGTCATGCGAAGGGAGGGAGCTGAATGAGAAGG---------
TTGCAGCGACGCGTGGCGCAGGTGCGGGTGGTG---GCGTCGGCGAGTCTAAGGC---------GTTGGACTTGCCTTT-
-----GCTCGGGGGAACCGGTACGGGAACCAGCACCATTACCGGCCCGCTGGTGGTGCTTCCT---------GGGATCCC
TGCTATTGGC----CCATGATCATCTCTGGCTCATGTGCTGGCTTACA-----AGGAGCTAAAGCTCGCCTTGTCGCTTT
AGA-T---T-----CTGTAGGTAG-CACCGCCGGGAAGGAAAAAGCGGACGTTTTGCTCATTTCCATG----TTCGGTAC
TGAGCGCCTGTATCAACTGTCATCTGTAC--TATCTATTTCCAGTTCA-TGTTCTCGTATTTTTCG-TTCCTTGATGTGC
TACATGTACCATCAA-----------------------------------------------------------------
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>chr2D_849
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--------------------GCCACCCCG--------TCCAGCTCGCCTATAAGATTAAGAAGCAGCGTAGACGATGCTA
AGCCTAAGCTCACTCCAAC------ACAGCCACCCAA--------CACTATC------ACAAAGCCGCACAAGCTAGACT
ATCTCCTCAGTAGTAT-----------------------------TAGCAAC--------------------ATGGCAAA
GTGCCTCGCCGTCGCGCTCCTCGTACTGGTGGCGCTCGCGTACTGCGACGGGAGGGAGCTGAACCAGAAGGACCAGGCAC
TGGCAACGGCACGCGGTGCCGGTGCCGGTGGTG---CCGTCGACGAGTCCAAGGT---------GCTGGGGCTGCCAGAC
CTGCCGGTCCTGGGAACCTTTACCGGTACCAGCACCATTACCGGCCCGCTGGTGGTGCTTCCA---------GGGATCCC
TGCTCA---C----CCATGATCATCTCGAGTTCATGTGCT------------TACAAGATGAAGCTGTCCTTGTGGCTTT
AGACT---T-TAGGCTCTAGCTAA-CACCGTCCGGAGGAAAAACGCTGGCGTTTCACTCGTGCCCATG----CTCCTTAA
TGGGCGTCTGTATCAACCATCCTGTCATCTGTATTTCTTTGCAGTTCTCTGTTCCAGTAATTTTCG-TTCCTTGATGTGC
CACATGTATAATCAACGTAATAAAT-------------------------------------------------------
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>SNPs
S-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS---------------------S------S---S--S--S---S----S--S----------------
-------S-------S---------SSSS-SS-------SS----------S----------------------------
--S-S-----------------------S------S------------S---------S-------S---S---S--S--
-----SS----S-SSSSS------S-------S---S----S-------------S----S-SSS---------------
---------------S---S-----------------------------S-----------S------------------
-----S---------S---------------------S----SSSSSS--------------------------------
---------S------------S-SSS-S-S----S-SSSSSSS----------------S----------------S--
S----S-------------------------------------------------------S------------------
----------------------------------------------------SSSSSS---------------S------
-------SSS------------S----------------------------------------------S-----S----
------------------S--------------------------------S----------------------------
--------S-----------------------------------------------------------------------
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-------------------------------------------------------------------------------S
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-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS
>forward_152
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----------------------------------------------------AGAACAGCTCTGCAACCTCC--------
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>reverse_1975
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------------------------------------------------------ACGGGAGAAGGGTGATACGA------
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