>input_sequence_86163
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------ATGGGGAAGTACGTGGAGCTGCTGGACATGGGGGTGCGTATCGCCGCGCGGTTCCACTCCCACTGCCCGCAGAC
GGCCCGGATGTACTATCACCCTCCCGCCTCCGCCTCGGCCGCCCCCGGCGCCGGCCACGGCGGCGGGATGGTGCCCGGAG
A---AGGAGGCGCCGTGGCCATGGCCATGATGAAGAGGCAGCGGCGGGCCGTCATCGACGCCACGGAGATTATTCTCTAC
ACCGTCGTCTAG--------------------------------------------------------------------
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>chr7B_1_TraesCS7B01G254700
AGCGATGCAGTTGGGGTTCGCCGCGACCATGGCCACCACGGCCACCTAGCTCGCGCGCTCGTCGTAGACCTGGCCCTCCG
CAGGCCGCTGCTGCTTAAGAAGGAACGGGTTGTAAATAGTTAACATTATCCATTATTTCATTTCTAAAAAAGGAGCGATC
CGATGGCCCACAGGGTGACCGATCTGCAGCTCGACCGGTCGACCGACGCA------CACCCGCACTTAAAAATCGGAGGC
AGGGGGCGGGCGTCCCAATTTTTGTGGCGTGGTCCCGATAGCCGCGTCGCCTACAAGGATGGTTCCCGGAAGCGTCGTTT
CGTTTTCAAGCATGTGAAAAAACCGTT-----------ACGCAAGAAAGCAACGAAAGGCTCTACGAAGCGAACCGCCGA
CGCGTCCGTCCTGTGTTACGCACGGAAAACCTAACTGACGCCAACCCAGGCCCAG--------CCCACGAGGCGAAAACA
TGGCAAATACCTAATAAAAATATTAATTGCTAAAAAAAACCTACTTAAATTATATTACAAGTCATATATTACAAAAAATA
TACCAACATAAACTTCGGAGTTTCTACTTTCAAAAGGTATAATTTTTGTGTTATATAGTTTATATTAGGGTGATAAAATT
GACAACCTAAATATACGCGTAGGACTTGTAAACTGAAACGGAGGTAGTACTAAAAATATTAATTACTCAATCAATACGGC
CAGCTGCCTAAAAAAAGAAGTAAATACGGCCAGCCAGGTCAAGGAAAAAAAATTAAAATC-CCCCCGTTTATTTCCTGCT
ATAAAACGCCCTCCCCCCTCCTCCATAGCTTCCCCAAGCATGAGCTCCTCTCCCCTGCTCTCCTCCACACCTCCCATGGC
CGCCCCCAGTTCCTGGGCCTCCCCGTTCCACGAAAAGAGAGCTTAGCGCTACCAAGCCCTCCGTC-------------GG
CTGCTTTCTTGGTCCGTC---CCGGTCGTCAATCTTCGTCGAGCGGAGAGGG---GA-AGGAGGTCGTCAGATTTGCGCG
AGATCCATGGGGAAGTACGTGGAGCTGCTGGACATGGGGGTGCGTATCGCCGCGCGGTTCCACTCCCACTGCCCGCAGAC
GGCCCGGATGTACTATCACCCTCCCGCCTCCGCCTCGGCCGCCCCCGGCGCCGGCCACGGCGGCGGGATGGTGCCCGGAG
A---AGGAGGCGCCGTGGCCATGGCCATGATGAAGAGGCAGCGGCGGGCCGTCATCGACGCCACGGAGATTATTCTCTAC
ACCGTCGTCTAGGCGGGT----TGCTGCTGCTGCGCTCATCCGGATTTATCGTGCCATTGAAGAGAGAGGAGAGAGGAGA
GGTGTTATCTTCTTTTATTGT-ACTTCTGTTTTACTTTCGAATCGA-GAGAGGGAAATGGAAGATGGGAGTGAATGTTCG
ATTGATTGAATGAATGGATTGAAGAATTTGCAAGTTAAATTCGTTTGATCTCCGATGCGATTTTGCCATTCCATTCATGT
TGAAATCGTTGCCTGAATCTCTTGGTTCCCTTTGTGAATTTTTTTCTCCCAACGTAATTGGGAGTGGCTGCTCACAACAA
GAGCCTCCCTCTTTATTTTTTACTCCCATCAAAAGTTAAAGGGCACTACCGATTTTCTCTTTCGTTGCCGT---------
----TTA-----AAAAAAGAGGCA-AAGCGGCGCAATGGG----------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TACAA
GTTAAATTTGTTTGATATCTGATGCGATTTTGTTTGATATCTTATTCCCGTTTGGATAACGATTGAATATCTTATTCCCG
TTTGGATTTTTTTTCTGCTGCAGTAATTACGTTGGCAGTAAAGATTTTCTTTAGGAGAAGAGGCGCAAGCGGCGCAACGG
GCACAGCAAAATCCTATTCCACTGTCACCGGAGGGGCAAAATTTTGTGTTTTGACATTTTTTTTGTAAGAAATTCAAGAT
CTGATCCTGGTTGTAAAAAAATTCGGGATTTGACCCTTTTGCTATCGCCAGGGCCCATGGCGGTAGGGTGCGACGGAGAG
GGACGGCGGTCGTTTGACTGCGCTAACGTGGATAAGTACCTACCGCCAGAAGGCCTGGCGGTAGGCTGTCTAACCCTCTG
ACGTTAGGGGTGTAGCAGGGTTTTGCCGTACAACCCTTTTGTAACGAAATGGACAGTGGACCTGGTGGTAGGCTGTCTAA
CCCTACCGCCAGAGCCCCTGGCGGTAGGGTCCTGTGTTTTCCAGTATAATGTTTCTGTAACGAAAAATGGAAGGGCCCTG
GCGGTAGGTGCGACCTACCGCCATGGGGGCTG
>chr4B_114
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---------------------------------AAATAGTTAGTATTCTCCATTATTTCATTCTAAAAAAAGGAGCGATC
CGATGGCCCACAGGGTGACCGATCTGCAGCTCGACCGGTTGACCGACGCAGAGCATCACCCGCACTTGAAAATCGGGGGT
AGGGGGCGGG-----CAATTTTTGTGGCGTGGTCCCGATAGCCGCGTCGC-TACTAGGATGGCTCGCGGAAGCATCGTTT
CGATTTCAAGCATGTGAAAAAACCATCCAAGGAAATGAACGCGAGAAGGCAACAAAAGGCTCTACGAAGCGAACCGCCGA
CGCGTCTGTGCTGTGTTGAGCACGG-AAACCTAACGGACGCCAACCCAGGCCCAGGCGCCCAGCCCACGAGGCGGAAACA
CGGCAAATACCTAAAAATAATAAT--T-------------AATCAT----------------------------------
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--------------------TTAATACGGACAGCCAGGTCAAGGAAATAA--TTAAAATCTCCCCCGTTTATTTCCTCCT
ATAAAACGCCCTCCCC-TTCCTCCATAGCTTCCCCAAGCATGAGCTCCTCTCCCCTGCTCTCCTCCACCCCTCCCATGGC
CGCCCCCAGTTCCTGGGCCTCCCCGTTCCACGAAAAGAGAGCTTAGCGCTACCAAGCCCTCCGTTCTTTCCAGTTCTCGG
CTGCTTTC----TCCGTC---CCGGTCATCAATCTTCGTCGAGCAGAGAGAG---GA-AGGAGGTCGTCAGATTCGCGCG
AGATCCATGGGGAAGTACGTGGAGCTGCTGGATATGGGGGTGCGCATCGCCGCGCGGTTCCACTCCCACTGCCCTCAGAC
GGCCCGGATGTACTACCACCCTCCCGCTTCCTCCTCGGCCGCCCCCGGCGCCGTCGACGGCGGCGGGATGGTGCCCGGAG
A---AGG---CGCCGTGGCCATGGCCATGATGAAGAGGCAGCAGCGGGCCGCCATCGACGCCACGGAGATTATTCTCTAC
ACCGTCGTCTAGGCCGGT-------TGCTTCTGAGCTCGTCCGGATTTATCGTGCCATTGAA-------GAGAGAGGAGA
GGTGTTATCTTCTTTTATTGT-ACTTCTGTTTTACTTCCGAATCGA-GAGAGGGAAATGAAAGATGGGAGACAATGTTTG
ATTGATTGAATGAACGGATTGAAGAATTTGCAAGTTAAATTCGTTTGGTTTCTGATGTGATTTTGCCATTCCACTCATGT
TGAAATCGTTGCCTGAATCTCTTGTTCCCGTTTGTATTTCTT----TCCCAGCGTAATTGGTAGAGGCTCCTCATAACAA
GAGTCTCTCTTTTATTTTTTTATTACTTCAAAAAAGTTGAGGGCACTACCGATTTTCTGTTTCGTTGATGTTATTTGTTA
TCCCTTTATTAGAAAAGAGAGGCACAAGCGGCGCATTGGGCACAGCAAACCCTATTCCATTGTGTTAAGATAGATGGGTG
GAGTGTCGTGGATTGAATATATACTCCCTCCATTCTAAATTACTCGTCGCTAAAATGGATGTATCTAGAACTAAATTACA
TCTAGATACATCCATACGTGCGACAAGTAATTCGGAACGGAAGTAGATGGATGGCGCATTGGGCACAGCAAACCCTACAA
GTTAAATTTGTTTGTT-TCTGATGCGATTTTGCCATTCCTGTTTCAAATCGTT-------GATTGAATATGCTATTCCCG
TTTGGATTTTTTTTCTGCTGTAGTAATTACGTTGGCAGTAAAGATTTTCTTTAGAAAAAGAGGCACAAGCGGCGCAATGG
GCAGAGCAAAATCCTATTCCATTGTCACCGGAG-----------------------------------------------
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>chr4D_114
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---------------------------------AAATAGTTAACATTCTCCATTATTTCATTTAAAAAAAATGAGCGATC
CGATGGCGCACATGGTGACCGATCTGCAGCTCGACCGGTCGACCGACGCAGAGCATCACCCGCACCTGAGAATCGGGGGT
AGGGGGCGGG-----CAATTTTTGTGGCGTGGTGCCGATAGCCGCGTCGCCTACTAGGATAGTTCGCGGAAGCGTCGTTT
CGTTTTCAAGCATGTGAAAAAACCGTCCAAGGAAATGAACGCGAGAAGGCAACAAAAGGCTCTACGAAGCGAACCGCCGA
CGCGTCTGTGCTGTGTCAAGCACGGAAAACCTAACGGACGCCAACCCAGGCCCAG--------CCCACGA--------CA
CGGCAAATACCTAAAGACATTAATTAT-------------AATCAA----------------------------------
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--------------------TAAATACGGCCAGCCAGGTCAAGGAAAAAAA-TTAAAATC-TCCCCCATTATTTCCTCCT
ATAAAAGGCCCGCCCC-CTCCTCCATAGCCTCCCCAAGCATGAGCTCCTCTCCCCTGCTCTCCTCCACCCCTCCCATGGC
CGCCCCCAGTTCCTGGGCCTCCCCGTTCCACGAAAAGAGAGCTTAGCGCTACCAAGCTCTCCGTCCTTTCGAGTTCTCGG
CTGCTTTC----TCCGTC---CCGGTCATCAATCTTCGTCGAGCAGAGAGAGAGAGA-AGGAGGTGGTCAGATTTGCGCG
AGATCCATGGGGAAGTACGTGGAGCTGCTGGACATGGGGGTGCGCATCGCCGCGCGGTTCCACTCCCACTGCCCGCAGAC
GGCCCGGATGTACTACCACCCTCCCGCCTCCTCCTCGGCCGCCCCCGGCGCCGGCGACGCCGGCGGGATGGTGCCCGGCG
AAGGAGG---CGCCGTGGCCATGGCCATGATGAAGAGGCAGCAGCGGGCCGCCATCGACGCCACGGAGATTATTCTCTAC
ACCGTCGTCTAGGCCGGC----TGCTG---CTGCGCTCATCCGGATGTATCCCGCCATTGAAGAGAGAGA------GAGA
GATGCTATCTTCTTTTATTGT-ACTTTTGTTTTATTTTCGAATCGAGGAGAGGGAGATGAAATATGGGAGAGAATGTTCA
ATTGATTGAATGAATGGATTGAAGAATTTGCGAGTTAAATTCGTTTGATTTCTGTC-CGATTTTGCCATTCCATTCATGT
TGAAATCGTTGATTGAATCCCTTGTTCCCTTGTGGA-----------------GTAATTGGGAGAGGCTGCTCACAACAA
GAGTCTCTCTCTTTATTT----TTACTTCAAAAAAGTTAGGGGCACTACCGATTTTCTGTTGTTATTTG-----TTGTTA
TCCCTTA-----AAAAAAGAGGCACAAGCGGCGCAATGGACACAGCAAACCCTATCCCATTTTGTTAAGATAGATGGGTG
CAGCATCGTGGAACAAGATCGAACCCCACATTCCATCGTCCTTGATGGGCGCGTGGAGTACTATTGATTGAATGAATGGA
TTGAAGAATTTG-----------------------------------------------------------------CAA
GTTAAATTTGTTTGATATCTGATGCGATTTTGCCATTCATGTTTCAAATCGTT-------GAATGAATA-----------
---GGATTTTTTTTCTGCTGTGGTAATTACGTTGGCAGTAAAGATTTTCTTTCGAAAAAGAGGCACAAGCGGCGCAACGG
GCACAGCAAAATCCTATTCCACTGTCACCGGAGG----------------------------------------------
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>chr4A_279
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--------------------------------------------CGTCGC-TACTAGCATGGCTCCCGGAAGCGTCGTTT
CGTTTTCAAGCATGTGAAAAAACCATCCAAAGCAATGAACGCGAGAAGGCAACAAAAGGCTCTACGAAGCGAACCGCCGA
CGCGTCTCTCCTGTATCAAGCACGG-AAACCTAACGGACGCCAACCCAGGCCCAG--------CCCACGA--------CA
CGGCAAATACCTAAAAACATTAATTATCAAAAAAAAATATAATCAA----------------------------------
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--------------------TCAATACGGCCGGCCAGGTCAAGGAAAAAA--TTAAAATC-CCCCCGTTTATTTCCTGCT
ATAAAAGGCCCGCCCCCGTCCTCCATAGCCTCCCCAAGCATGAGCTCCTCTCCCCCGCTCTCCTCCACCCCTCCCATGGC
CGCCCCCAGCTCCTGGGCCTCCCCGTTCCACGAAAAGAGAGCTTAGCGCTGCCGAGCCCTCCGTCCTCTCCACTTCCCGG
CTGCTTTC----TCCGTCCGTCCGGTCGTCAATCTTCGTCGAGCAGAGAGAGGGAGGGAGGAGGTCGTCAGATTCGCGCG
AGATCCATGGGGAAGTACGTGGAGCTGCTGGACATGGGGGTGCGCATCGCCGCGCGGTTCCACTCCCACTGCCCGCAGAC
GGCCCGCATGTACTACCACCCCCCCGCCTCCTCCTCCGCCGCCCCCGGCGCCGGCGACGGCGGCCGGATGGTGCCCGGAG
A---AGG---CGCCGTGGCCATGGCCATGATGAAGAGGCAGCAGCGGGCCGCCATCGACGCCACGGAGATCATCCTCTAC
ACCGTCGTCTAGGCCGGCCGGTTGCTG---CTGCGCTCATCCGGATTTATCGTACCATTGAAGG--GAGA------GAGA
GATGCTATCTTATTTTATTGTTACCTTTGTTTTATTTTCGAATCGAGGAGAGGGAAATGAAAGACGGGAGTGAATGTTCG
ATTGATTGAATGAATGGATTGAAGAATTCGCGAGTTAAATTCGTTTGATTTCCGATGCGTTTTTGCCATTC---------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S---------------SS---------------
-------------------------------------------------------------------S--------S--S
----------SSSSS---------------------------------------S-------------------------
--------------------------S---------------S----S-----S--------------------------
------S-----------S----------------S--------------------------------------S-----
S-------------S--S----S-S--SSSS------S-SSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS-------------------------------S----------------------------
--------------------------------------------------------------------S-----------
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--------SSSS--------------------------------S-----S-----------------------------
--------------------------------------------S-----------------------------------
---------------S---------------S-----------------------S------------------------
-------SSS--------------------------------S--------S----------------------------
--------------S--------------S--------------------------------------------------
-----------------------------------------------------------S--------------------
-------------------------------------------------S------------------------------
------------------------S-S--S-----SSS-S--SSSS-----S------------S---------------
---S---S--------------S-S-SSSS----SS-S--------------------S--------SS-----------
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--------------------------------SSSSSS--S--SSSSSSSS--SSSSSSS----------SS--------
--------------------S---------------------------------S-S-------S---------------
----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_727
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-------------------------------------------------------------------CAATCAATACGGC
CAGCTGC-------------------------------------------------------------------------
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>reverse_2254
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-------------TTGACTGCGCTAACGTGGAT-----------------------------------------------
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