>input_sequence_86095
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------------------------------------ATGGCCACCAAGGGCTACCAGGCTCAAGCCCCGGCGATGCCCGC
GGCGGGAGAGCGCGCCGGCTCCGGCGG------------CGGC------------AACAAGGCGCCGACCGGGAGCACGC
CGA------GGCGCGGCCAGATCAAGGAGAAGATCATCAAGGACGTGATCACCGCGGTCACCAACCTGGCCGCCGGGCTC
GTCCGCGCCGACAAGAACGACGCCAGCACGGGCGGTCTCCCGGCCGCCGGCGACGCCGACGCCAAGTGA-----------
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>chr1A_1_TraesCS1A01G289100
AGTGTGTATTTGCGAAGTTGAATGGATCTTTGAGACTGATCTCTATAGTTATTTATTATTTTGTGTCAATAGTATGTGTT
AGTTTAATTCAGTTTATTATATAATAAATATGAAAAAAATTATCTTTGTTGCAACACATGACGAAGATGAGGTGGGTGTC
ATTTGATTTTAAAGAAGGAGGCTCCAGCGAGAAATGTCCC-ATTATGGCAGGAAACCGAGTGAGAAAGGAAGGATCTGAG
AGAAAAAGAGGGTGATACGTTGTGGGGTGGT-TTTTTTTGTGTTAGGCCAATGTGTTGGAGATAACATGGGGGATAGTCC
GAACAACCGCATTTCTCCCTCACATAAGGTCTAAATTTGAGGCAGCCCAGACTGTTCATACGGTTAAATTTTAAAGAGCC
TACTAAGCGTTCATTTGATGTCCGAACACGTTCGAACCTTTGAGAACAAATAAGTTTTGACCTTACAGATAATCTTAATC
ATTTGTTTAATTAATTTATATATGCATAGCCCATAGTAACGCATGAGCGTTCTGCTACTATCAGCAAGTGACGACTTGGC
GAGCGAGAACGCGATACGTCCCCAGGCTCCTTCGAGAAACCTTTGCACTACCGACTTGCCATCCAAGCC-AGCCAAGCCG
TCCGGACTTGCCA--------CTAGCAGCAGCGCCCAGCATAGAAAGTACAAGGCGGGCCCACAATCGACCGTCCAAAAT
GC-AGATA----TGGACGCGTT-----GTGCCGAGTCACTGGCA-CGTCCCCACTTGACACCTGGCTACCCCACCCGTCA
CTGAGACGCGCGAGCTCCTGGCTGGTT--------------GAGCCCGAGC-------CCGACATGTACGCTTTTGGGTC
CCATGCCCGAGCGCGCTTT-G---GGACCCGCC------ACCTCTGCTCTTTTCCGGCCATCGCACTGCTCCCTGCCCAC
GCACAGCCGCCTATTTAACCGGTCTCGGACCACAG-CCTGGAGGAT----------------------ATCCACCAACCT
CTCCCCTCCCTGCCCTCCTCTCCCCCCGCCGGAAGAATGGCCACCAAGGGCTACCAGGCTCAAGCCCCGGCGATGCCCGC
GGCGGGAGAGCGCGCCGGCTCCGGCGG------------CGGC------------AACAAGGCGCCGACCGGGAGCACGC
CGA------GGCGCGGCCAGATCAAGGAGAAGATCATCAAGGACGTGATCACCGCGGTCACCAACCTGGCCGCCGGGCTC
GTCCGCGCCGACAAGAACGACGCCAGCACGGGCGGTCTCCCGGCCGCCGGCGACGCCGACGCCAAGTGAACCGCCCCCGT
TCTCCTGCAGCCGCT----------------CGCC----------------------------CGTCCTCTGCTGCTACT
CTGTGCTCATTTT-AGTGCGCGCAGCAGAT-CCGGAGCAAAATAC---TACTACCGGTA------------------TTG
T--TAAATTTCCGTCGCGTCAGCGTCAG-------CGGTGGGCGGATTCAGTTGCCTTATTTGAGGTAGCAGCTGGTCTC
CCCATCCCTAGTTTCTGCGTCTTGAGCTGGGTCCGCCT----------------------CGGTGATCTTCTTCCTGCTG
CTGGAGTGCTGGTTGGTGG-TGAAGCCTCAGCTGCTGGCATCTCGGGAGG-TTTGGGAAGGTTTTTTAGTGCCGACCTCC
CGATATGTTTGCCGCTGCGTCTTCATCTCCTCCCCGAGCAGGTCTGGTCGATCGTAGCTCTTTCTTCCC-GTTGTGTGC-
---TGCTGCTTGCTAGGGTTTGATTGTGT-----GCCTGT-----G---TACGGTGCTGTAAAAAGAAGGGATGGATCAG
CGAGTATT--ATGGTCCGATCCGTCCGTCCTTGCT--TGTGTATGT----GCTCCTAGTATTGTGGCT--CCCTTCTTGT
GAAATCAATACTACTGTACTGGTTA--------------------------CATATTAAGCAC----TTCCGTGTTACTT
TAGAAACCCGATTGATTTGGCTACCGGAGGATTCTGCTTCGAGTTCTATC---ACGTTTTTGCTTGACCTCTGCATTTCC
TTTTTGAGGTTGCTTAACCTCTGCATGATGAGTGCA--------TCCCTTTCTATGTCCTCTCACCTGCGTGCCGCTAGG
AAAAAAGCGCTCAGATTTGATTGAGACACGACAGTCGTCATAAGATTGCAAGTTAGAACACAATAAATATGAAAATGAAA
AGGTGGTGATATTATGTACGAAGC---------------------------------ACTGTTGTCGCTCAAGTCTTGAT
TCATCTCCCACAGACCTCGCTTGTCCAAGTCAAGTCTCCGC-CGCTATCAACTTGCTGCCGATGCCAAAAG--------C
CCCTCTGGTTTGAACGCCTCGCGCAAAGTAACTCTAAACAAATGAGGGTTCGAACTCGCGACGTGACACGCAACCTAGGG
>chr1A_1
AGTGTGCATTTGAGAAGTTGAATGGACCTTTGAGATTGATCTCTATAGTTATTTATTATTTTGTGTCAATAGTATGTGTT
AGTTTAATCCACTTTATTATATAATAAATATGAAAAAAATATTG-TTATTGCGACACATGACGAAGATGAGGTGGGTGTC
ATTTGATTTTAAAGAAGGAGGCTCCAGCGAGAAATGTCCC-ATTACGGCGGGAAACCGAGTGAGAAAGGAAGGGTCTGAG
AGAAAAAGGGGGCGATACGTTGTGGGGTGGGGTTTTTTTGTGTTAGGCCCATGTGTTGAAGATAACATGAGG-ATAGTCC
GAACAACCCCATTTCTCCCCTATATAAGGTCTAAATTTGAGACAACCCAGACTATCCATACGGTTAAATTTTGAAGAGCC
TACTAAG-GTTCATTTGATGTCCGAACACGTCCGGATCTTTGAGAACAAATGAGTTTTGACCTTACAGATAACCTTAATC
ATTTGTTTAATTAATTTATATATGCATAGCCCGTAGCAACGCACAGGCGTTCTGTTA-----------------------
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>chr1A_1
AGTGTGCATTTGCGAAGTTGAATGGACCTTTGAGACTGATCTCTATAGTTATTTATTATTTTGTGTCAATAGTATGTGTT
AGTTTAATCCACTTTATTATATAATAAATATGAAAAAAAATATCTTTGTTGCAACGCATGATGAAGATGAGGTGGGTGTC
ATTTGATTTTAAAGAAGGAGGCTCCAGCGAGAAATGTCCC-ATTACGATGGGAAACCGAGTGAGAAAGGAAGGGTCCGAG
AGAAAAAAAGAGCGATACGTTGTGGGGTAGG-GTTTTTTGTGTTAGGCCCATGTGTTGGAGATAACATGAGGGATAGTTC
AAACAACCGCATTTCTTTCCCATATAAGGTTTAAATTTGAGGCAGCCCAGACTATCCATACGATTAAATTTTGAAGAGCC
TACTAAGTGTTCATTTGATGTCCGAACACGTTCGGACATTTGAGAACAAATGAGTTTTGACCTTACAGATAACCTTAATC
ATTTGTTTAATTAATTTATATATGTATAGCCCGTAGCAATGCACGGGAGTTTTGCTA-----------------------
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>chr4A_1
AGTGTGCATTTGCGAAGTTGAATGGACCTTTGAGACTGATCTCTATAGTTATTTATTATTTTGTGTCAATAGTATGTGTT
AGTTTAATCCACTTTATTATATAATAAATATGAAAAAAATTATCTTTATTGCAACGCATGAGGAAGATGAGGTGGGTGTC
ATTTGATTTTAAAGAAGGAGGCTCCAGCGAGAAATGTCCC-ATTACGGCGGGAAACCGAGTGAGAAAGGAAAGGTCCGAG
AGAAAAAGGGGGCGATACGTTGTGGGGTGGA-GTTTTTTGTGTTGGGCCCATGTGTTGGAGATAACATGGGGGATAGTCT
GAACAACCGCATTTC-CCCCCATATAAGGTCTAAATTTGGGGCAGCCCAGACTATCCATACGGTTAAATTTTGAAGAGCC
TACTAAGCGTTCATTTGATGTCCGAACATGTCCGGACCTTTGAGAACAAATGAGTTTTGACCTTACAGCTAACCTTAATC
ATTTGTTTAATTAATTTATATATGCATAGCCCGTAGCAACGCACGAGCGTTCTGCTA-----------------------
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>chrUn_1
AGTGTGCATTTGCGAAGTTGAATGGACCTTTGAAACTGATCTCTATAATTATTTATTATTTTGTGTCAACAGTATGTGTT
AGTTTAATCCACTTTATTATACAGTAAATATGAAAAATTTCATCTTTGTTGCAACGCATGACGAAGGTGAGGTGGGTGTC
ATTTGATTTTAAAGAAGGAGGCTCCAGCGATAAATGTTCC-ACTACGGCGGGAAACCGAGTGAGAAAGGGAGGGTCCGAG
AGAAAAAGGGGGCGACACATTGTGGGGTAGGGTTTTT--GTGTTGGGCCCATGTGTCGGATATAACATGGGGGATAGTCC
GAACAACCGCATTTCTCCTTCATATATGGTCTAAATTTGGGGGAGCTCGGACTGTCCATACGGTTGAATTTTGAAGAGCC
TACTAAGCATTCGTTTGATGTCCGAACACGTCCGGACCTTTGAGAACAAATGAGCTTTGACCTTACAGACAACCTTAATC
ATTTGTTTAATTAATTTATATATGCATAGCCCGTAGCAATGCACGGGCGTTCTGCTAGTA--------------------
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>chrUn_1
AGTGTGCATTTGCGAAGTTGAATGGACCTTTGAAACTGATCTCTATAATTATTTATTATTTTGTGTCAACAGTATGTGTT
AGTTTAATCCACTTTATTATACAGTAAATATGAAAAATTTCATCTTTGTTGCAACGCATGACGAAGGTGAGGTGGGTGTC
ATTTGATTTTAAAGAAGGAGGCTCCAGCGATAAATGTTCC-ACTACGGCGGGAAACCGAGTGAGAAAGGGAGGGTCCGAG
AGAAAAAGGGGGCGACACATTGTGGGGTAGGGTTTTT--GTGTTGGGCCCATGTGTCGGATATAACATGGGGGATAGTCC
GAACAACCGCATTTCTCCTTCATATATGGTCTAAATTTGGGGGAGCTCGGACTGTCCATACGGTTGAATTTTGAAGAGCC
TACTAAGCATTCGTTTGATGTCCGAACACGTCCGGACCTTTGAGAACAAATGAGCTTTGACCTTACAGACAACCTTAATC
ATTTGTTTAATTAATTTATATATGCATAGCCCGTAGCAATGCACGGGCGTTCTGCTA-----------------------
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>chrUn_1
AGTGTGCATTTGCGAAGTTGAATGGACCTTTGAAACTGATCTCTATAATTATTTATTATTTTGTGTCAACAGTATGTGTT
AGTTTAATCCACTTTATTATACAGTAAATATGAAAAATTTCATCTTTGTTGCAACGCATGACGAAGGTGAGGTGGGTGTC
ATTTGATTTTAAAGAAGGAGGCTCCAGCGATAAATGTTCC-ACTACGGCGGGAAACCGAGTGAGAAAGGGAGGGTCCGAG
AGAAAAAGGGGGCGACACATTGTGGGGTAGGGTTTTT--GTGTTGGGCCCATGTGTCGGATATAACATGGGGGATAGTCC
GAACAACCGCATTTCTCCTTCATATATGGTCTAAATTTGGGGGAGCTCGGACTGTCCATACGGTTGAATTTTGAAGAGCC
TACTAAGCATTCGTTTGATGTCCGAACACGTCCGGACCTTTGAGAACAAATGAGCTTTGACCTTACAGACAACCTTAATC
ATTTGTTTAATTAATTTATATATGCATAGCCCGTAGCAATGCACGGGCGTTCTGCTAGTA--------------------
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>chr7D_1
AGTGTGCATTTGCGAAGTTGAATGGACCTTTGAGACTAATCTCTATAGTTATTTATTATTTTGTGTCAATAGTATGTGTT
AGTTTAATCCACTTTATTATACAGTAAATATGAAAATTTTCATCTTTGTTGCAACGCATGACGAAGGTGAGGTGGGTGTC
ATTTGATTTTAAAGAAGGAGGCTCCAGCGAGAAATGT-CC-ACTACGACGGGAAACCGAGTGAGAAAGGGAGGGTCCGAG
AGAAAAAGGAGGTGATATGTTGTGGGGTGGGGTTTTT--GTATTGAGCCCATGTGTTGGAAATAACATGGGG-GTAGTCT
GAACAACCGTATTTCTCCCCCATATATGGTCTAAACTTGGGGGAGCCCGGACTGTCCATACGGTTGAATTTTGAAGAGCC
TACTAAGCGTTCGTTTGATGTCCGAACACGTCCGGACTTTTGAGAACAAATGAGTTTTGATCTTACAGACAACCTTAATC
ATTTGTTTAATTAATTTATATATGCATAGCCCGTAGCAACGCACGGGCGTTCTGCTAGTA--------------------
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>chr5D_1
AGTGTGCATTTGCGAAGTTGAATGGACCTTTGAGACTGATCTCTATAGTTATTTATTATTTTGTGTCAATAGTATGTGTT
AGTTTAATCCGCTTTATTATATAGTAATTATGAAAATTTTCATCTTCGTTGCAACGCATGACGAAGGTGAGGTGGGAGTC
ATTTGATTTTAAAGAAGGAGGCTCCATCGAGAAATGTCCC-ACTACGGCGGGAAACCGAGTGAGAAATGGAGGGTCCGAG
AGAAAAAGGGGGTGATATGTTGTGGGGTGGGGTTTTT--GTGTTGGGCCCATGTGTTGGAGATAACATGGGG-ATAGTCC
AAACAACCGCATTTCTCCCCCATATATGGTCTAAATTTGGGGGAGCCCGGACTGTCCATACGGTTGAATTTTGAAGAGCC
TACTAAGCGTTCGTTTGATGTCCGAACATGTCCGGACCTTTGAGAACAAATGAGCTTTGACCTTACAGATGACCTTAATC
ATTT-TTTAATTAATATTTATATGCATAGCCCGTAGCAATGCACGGGCGTTCTGCTA-----------------------
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>chr2A_2
-GTGTGCATTTACGAAGTTGAATGGACCTTTGAGACTGATCTCTATAGTTATTTATTATTTTGTGTCAATAGTATGTGTT
AGTTTAATCCACTTTATTATATAGTGAATATGAAAATTTTCATCTTTGTTGCAACACACGACGAAGGTGAGCTGGGTGTC
ATTTGATTTTAAAGAAGGAGGCTCTAGCGAGAAATGT-CAGACTATGGTGGGAAACCGAGTGAGAAAGGGACGGTCCGAG
AGAAAAAGGGGGCGATACATTGTGGGGTGGGGTTTTT--GTAATTGGCCCATGTGTTGGAGATAACATGGGGGATAGTCC
GAACAACCGCATCTCTCCCCCATATATGGTCTAAATTGGGGGGAGCCCAGACTGTTCATATGGTTGAATTTTGAAGAGCC
TACTAAGCATTCGTTTGATGTCCGAACACGTCCGGACCTTTGAGAACAAATGAACTTTGACCTTACAGACAACCTTAATC
ATTTGTTTAATTAATTTATATATGCATAGCCCATAGCAACACATGGGCATTCTGCTA-----------------------
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>chr1D_537
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----------------------------------------------------------TATCAGCAAGTGACGACTTGGC
GAGCGAGAAGGCGATACGTCTCCAGGTTCATTCGAGAAACC-TTGCATTACCGACTTGCCATCCAAGCC----------G
TCCAGACTTGCCA--------CTAGCAGCAGCGCCCAGCATAGAAAGTACAAGGCGGGCCCACAATCGACCGTCCAAAAT
TT-AGATG----TGGACGCGTACTGCCGTGCCGAGTCACTGGCA-CGTCCCCACTTGACACCTGGCTACCCCACCTGTCA
CTGAGACGCGCGAGCTCCTGGCTGGGA---------------AGCCCGAGC-------CCGCCATATACGCTTTTGGGTC
CCATGCCCGAGCGCGCTTT-G---GGACCCGCC------ATCTCTGCTCTTTTCCGGCCATCGCTCTGCTCTCTGGGCA-
-CACAGCCGTCTATTTAACCGGTCTCGGACCGCAG-CCTGGAGAATATCCAGTCTCGACGGCGAAAAAATCCACCAACCT
CTCCCCTCCCTGCCCTCCTCTCGCCCCGCCGGAAGAATGGCCACCAAGGGCTACCAGGCTCAAGCCCCGGCGATGCCCGC
GGCGGGAGGGTCCGCCGGCTCCGGCGG------------CGGC------------AACAAGGCGCCGACGGGGAGCACGC
CGA------GGCGCGGCCAGATCAAGGAGAGGATCATCAAGGACGTGATCACCGCGGTCACCAACCTGGCCGCCGGGCTC
GCCCGCGCCGACAAGAACGGCACCGGCACCGGCGGCCTCCCGGCCGCCGGCGACGCCGACGCCAAGTGAACAGCCCCCGT
TCTCCTGCAGCCGCT----------------CGCC----------------------------CGTCGTCTGCTGCTACT
CTGTGCTCATTTT-AGTGCACGCGGCAGAGGCCGGAGCAAAATACTACTCCTACTAGTA------------------TTG
TTATAAATTTCCGTCGCGTCGGCGTCAG-------TGGTGGGCGGATTCAGTTGCCTTATTTGAGGTAGCAACTGCTCTC
TCCATCCCTAGTTTCTGAGTCTTGAGCTGGGTCCGTCT----------------------TGGTGATCTTCTTGCCGCTG
GTT--------GTTGGTGG-TGAAGTCTTAGCTGCTAGCATCTCGGGAGG-TTGC-GAAAGTTTTAAAGTG-CAACCTCC
CGATATGTTTGCCGCTGCGTCTTCATCTCCTCGTCGAGCAGGTCTGGTCGATCGTAGCCA-GGTCTTCAGGTTGTGTGC-
---TGCTGCTTGCTTGGGTTTGATTGTGT-----GCTTGT-----G---TACGGTACTGTAAAAAGGAGGGACGGATCAG
CGAGTATT--ATGGTCCGACCCGTCTTTCCTTGCT--TG----TGT----GCTCCTAGTATTGTGGTT--CCCTTCTTGT
GAAATCAGTAATACCGTACTGGTTA--------------------------TATATTAAGCAT----TTTCGTGTTAA-T
TAGAAACCCGTTTGATTTGGCCACCGGAGGATTCTGCTTCAAGTTTTATC---ACGTTTTTGCTTGACCTCTGCATTTCC
TTTTTGAGCTTGCTTAACCTCTGCATGATGAGTGCAAAAGCTAGTCCCTTTCTATGTCCTGTCACCTGCGTGCCGCAAGA
TAAAAATCGCTCCGCTTTGATTGAGGGACGACAATCGTCATAAGATTCCAAGGGAGAACAGAATAAATATGAAAATGAAA
AGGTGGTGATATTA--TACGAAGCAAGTGCACCTATAATAAAATAAAAAGCGTTCTTACGGTTGGCGCTCAGGTCTTAAT
CCATCTCCCACAGACAACGCTTGTCCAAGTCAAGTCTCCTCCCGCAATCAACTTGCTGCCGATGTCAAAAGCCCAAAAGC
CCCTCTGGTTTGAACGCCTCGCGCAAAGTAACTCTAAACAAATGAGGGTTCGAACTCGCGACGTGACACGCAACCTAGG-
>chr1A_546
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-------------------------------------------------------------------GTGACGACTTGAC
GAGCGACAACGCGATACGTCTTCAGGTTCCTTCGAGAAACC-TTGCAGTACTGACTTGCCATCCAAGCCTA---------
---------GCCA--------CTAGCAGCAGCAGCCAACGTGGAAAGTACAAGGTGGGCCCACAGCCGACCGTCCAAAAT
TT-AGATA----TGCACGCATTC-GCCGTGCCGAGTCA-----------------------CTGGCTACCCCACCCGTCA
CTGAGACGTGCAATCTCCTGCCTGGTT--------------GAGCCCGAGC-------CCG----ATACGCTTTTGGGGC
CCACGCCGGAGCGCGCTTT-T---GGG---GCC------ACCTCTGCCCTTTTCCGGCCATCGCTGCGCTCTGCTCTCTC
CCGGCTACGCCTATATAATCCCCCTCGCAGACAGAACCTGGAGTATATCCAGCCTCGACGGCGAAACAATCCACCAACCT
CTCGTCCTCT------------CCCCCGCCGGAAGAATGGCCACCAAGGGCTACCAGGCTCCAGCTCCGGCGATGGCCGC
GGCGGGAGGGGGCGCCGGTTCCGGCGGCGACGGCGGCGACGGC------------AACAGGGCGCCGAAGGGGAGCAAGC
CGC------GGCGTGGACAGGTCAAGGAGAAGATCATCAAGGACGTGGTCGCCGCGGTCGCCAACATGGCCGCGGGGCTC
GTCCGCGCCGACAAGAACGGCACCGGCACCGGCGGTCTCCCGGCCGCCGGCGACGCCGGTGCCAAGTGAACAGCCCC---
-----------------------TGTGTTCACGCC----------------------------CGTCCTCTGCTGCTACT
CCGTGCTCATTTTTTGTGCGCGCAGCAGATGCCGGAGCAAAATACTACTACTACCGGTA------------------TTG
T--TAAATTTCCGTCGCGTCAGCGTCAGCG-TCAGTGGTGGGCGGATTCAGTTGCCTTATTTGAGGTAGCAACTGGTCTC
TTCATCCG--------------------------GTCT----------------------CGTTGATCGTCTTGCTGCTG
CTG--------GTTGGTGG-TGAAGTCTCGGCTGCTAGCATCTCGGGAGG-TTGC-GAAGGTTTTTTAGTGCCAACCTCC
TCATATGTTTGCCGCTGCGTCTTCATCTCCTCCTCGAGCAGGCCTGGTCGATCGTAGGTCTTGTCTTCAAGTTGTGTGC-
---TGCTGCTTGCTTGGGCTTGATTGTGT-----GCTCGTGTATGT---TACGGTACTGTAAAATGAAGGGATGGATCAG
CGAGTATT--ATGGTCCGATCCATCCTTCCTTGCT--TGTGTGTGTGTGTGCTCGTAGTATTGTGG-TTCCCTTCTTTAT
CAAATCAATACTAT-------------------------------ATATAGTATACTAAGCA-----TTTCGTGTTAC-T
GAGGAAC-----TGGTTTGGCCATCAGAGGATTCTGCTTCAAGTTGTGTACTAACATTTTTGCTTACCCCTG--------
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>chr1B_546
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-------------------------------------------------------------------GTGACGACTTGAC
GAGCGACAACGCGATACGTCTTCATGTTTCTTCGAGAAACC-TTGCAGTACTGATTTGGCACCCAAGCC-A---------
---------GCCA--------CTGGCAGCAGCAGCCAACGTGGAAAGTACAAGGCGGGCCCACATCCGACCGTCCAAAAT
TT-AGATAGATATGCACGCATTCTGCCGTGCCTAGTCACTTGCA-CGTCCCCACCTTACACTGGGCTACCCCACCTGTCA
CTGAGACGTGCAAGCTCCTGGCTGGTATAGTTCCAGCCCGAGAGCCCGAGCCCGAGGACCGCCATGTACGCTTTTGGGGC
CCATGCCCGAGCGCACCTTACACTGGACCCGCCACCTCAATCTCTGCTCTTTTCCGGCCATCGCTGCGCTCTGCTC----
---A--CCGCCTATTTAATCCCGCTCTCACAGAGAACCTCGAGTATACCCAGCCTCGACGCCGAAACAATCCACCAACCT
CTCC-CTCCCTGCCCTCCTCTCCCCCCGCCGGAAGAATGGCCACCAAGGGATACCAGGCTCCAGCTCCGGCGATGCCCGC
GGCGGGAGGGGGCGCCGGTTCCGGCA------GCGGCGGCGGC------------AACAGGGCGCCGAAGGGGAGCATGC
CGCTGCGTCGCCGCGGCCAGGTCAAGGAAAAGATCATCAAGGACGTGGTCGCCGCGGTCGCCAACATGGCCGCGAGGCTC
GTCCGCGCCGACAAGAACGGCACCGGCACCGGCGGTCTCCCGGCCGCCGGCGACGCCGGCGCCAAGTGAACAGCTCC---
-----------------------TGTGTTCACGCC----------------------------CGTCCTCTGCTGCTATT
CCGTGCTCATTTTTTGTGCGCGCAGCAAATGCCGGAGCAAAATAC---TACTACCGGTA------------------TTG
T--TAAATTTCGATGGCGTCAGCGTCAGT-------GGTGGACGGATTCAGTTGCCTTATTTGAGGTAGCAACTGGTCTC
TTCATCCG--------------------------GTCT----------------------CGGTGATCTTCTTGCTGCTG
CTG--------GTTGGTGG-TGAAGCCTCAGCTGCTAGCATCTCGGGAGG-TTGC-GAAGGTTTTTT-------------
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>chr1B_585
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--------------------------CTCCTTCGAGAAACC-TTGCACTACCGACTTGCCATCCAAGCC-AGCCAAGCCG
TGCAGACTTGCCACTAGCAGGCTAGCAGCAGCGCCCAGCATAGAAAGTACAAGGCGGCCCCACAATCGACCGTCCAAAAA
TTTAGATG----TGGACGCTCT-----CTGCCGAGTCACTGGCA-CGTCCCCACTTGCCACCTGGCTACCCCACCTGTCA
CTGAGACGCGCGAGCCCCTGGCCAGTA---------------AGCCCGAGC-------CCGCCATATACGCTTTTGGGTC
CCATGCCCGAGCGCGCTTT-G---GGACCCGCC------ATCTCTGCTCTTTTCCGGCCATCGCTCTGCTCTCTGCCCAC
GCACACCCGCCTATTTAACCGGTCTCGGATCGCAG-CGTGGAGGATACCCAGCCTCGACGGCAAAACAATCCACCAACCT
CTCCCCT-----CCCTCTTCTCCCCCCGCCGGAAGAATGGCCACCAAGGGCTACCAGGCTCAAGCTCTGGCGATGCCCGC
GGCGGGAGAGCGCGCCGGTTCC------------GGCGGCGGC------------AAAAAGGCGCCGACGGGGAGCACGT
CGCTGCCGAGGCGTGGCCAGATCAAGGGGAAGATCATCAAGGATGCGGTCGCCGTGGTCGCCAGCCTTGCCGCGGGGCTC
GTCCGCGCCGACAATAACGGGGCCGGCGGCGGCGGTCTTCCGGCCGCCGGCGACGCCCACGCCAAGTGAACCGCCCCCGT
TCTCCTCCACCCGCTAAGGTCGATGTGCTCTCGTC----------------------------GGTCCTCTGTTGCTACT
CTGTGCTCG-TTTTAGTGCACGCAGCAGAGGCCGGAGCAAAATAC---TACTACCGGTA------------------TTG
T--TAAATTTCCGTCGCGTCAGCGTCAGC-------GGTGGGCGGATTCAGTTGCCTTATTTGAGGTAGCAACTGATCTC
TCCGTCCCTAGTTTCTGCGTCTTGAGCTGGGTCCGTCT----------------------CGTTGATCTTCTTGCTGCTG
CTG--------GTTGGTGGGTGAAGCCTCAGCTGCTAGCATCTCGGGAGA-TTGC-GAATGTTTTAAAGTG-CAACCTCC
TCATATGTTTGCCGCTGCGTCCTCATCTCCTCCTCGAGCAGGTCTGGTCGATCGTAGGTCTTTTCTTCAGGTTGTGTGC-
---TGCTGCTTGCTTGGGTTTGGGTGTGT-----GCTCGTGTATGGGAGTATGGTACTGTAAAAAGGAGGGACGGATCAG
CAAGTATT--ATGGTCCGATCCGTCCTTCCTTTCT--TGTGTGTGT----GCTTCTAGTATTATGG-C--CCGTTCTTAT
CAAATCAATACTACTGGTTAC--TA--------------------------TATCTTAAGCATCTGGGATCGTGTTGA-T
TAGAAACCCGTTTGATTTGGCCACCGGAGGATTCTGCTTCAAGTTCTATC---ACGTTTTTGCTTGACCTCTGCATTTCC
ATTTTGAGGTTGCTTAACCTCTGCATGGTGAGTGCAAAAGTTAGTCCCTTTCTATGTCCTGTCACCTGCGTGCCGCAAGA
TAAAAATCGC---------------------------TCATAAGATTCCAAGGGAGAACAGAATAAATATGAAAATGAAA
AGGTGCTGATATTA--CACGCAGCAAGTGCACCTATAATGG-----AAAGCGTTCCTACCGGTTGCGCTCAAGTCTTGAT
CCATCTCCCACAGACCTCGCTTGTCCAAGTCAAGTCTCCGCCCGCAATCAACTTGCTGCCGATGCCAAAAT--------C
CCCTCTGGTTTGAACGCCTCGCGCAAAGTAACTCTAAACAAATGAGGGCTCCAACTCGCGACGTGACACGCAACCTAGG-
>chr1B_588
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-----------------------------CTTCGAGAAACC-TTGCACTACCGACTTGCCATCCAAGCC-AGCCAAGCCG
TGCAGACTTGCCACTAGCAGGCTAGCAGCAGCGCCCAGCATAGAAAGTACAAGGCGGCCCCACAGTCGACCGTCCAAAAT
TT-AGATG----TGGACGCTTTC-----TGCCGAGTCACTGGCCGCGTCCCCACGTGACACCTGGTTACCCCACCTGTCA
CTGAGACGCGCGAGCTCCCGGCCAGTA---------------AGCCCGAGC-------CCGCCATATACGCTTTTGGGTC
CCATGCCCGAGCGCGCTTT-G---GGACCCGCC------ATCTCTGCTCTTTTCCGGCCATCGCTCTGCTCTCTGCCCAT
GCACAGCCGCCTATTTAACCGGTCTCGGCTCGCAG-CGTGGAGGATACCCAGCCTCGA----------------------
-----------------------------CGGAAGAATGGCCACCAAGGGCTACCAGGCTCAAGCACCGGCGATGCCCGC
GGCGGGAGGGCCCGCCGGCTCC------------GGCGGCGGC------------AACAAGGCGCCGACGGGGAGCACGT
CCCTGCCGAGGCGCGGCCAGATCAAGGAGCGGATCATCAAGGACGTGATCACCGCGGTCACCAACCTGGCCGCCGGGCTC
GTCCGCGCCGACAAGAACGGCGCCGGCACCGGCGGTCTCCCGGCCGCCGGCGACGCCGACGCCAAGTGAACCACCCCCGT
TCTCCTCCACCCGCT----------------CGCTCGGTGTGCTCTCCTTGCCTCGTCGATCTCGTCCTCTGTTGCTACT
CTGTGCTCATTTT-AGTGCGCGCAGCAGAGGCCGGAGCAAAATACTACTACTACTACTCTGTGCTCATTGTAGTAGTTTG
T--TAATTTTCCGTCGCGTCAGCGTCAGTACTCAGTGGTGGATGGATTCAGTTGCCTTATTAGAGGTAGCAACTGGTCTC
CCCATCCGTAGTT----------------------TCTGCGTCTTGAGCTGGGTCCGCCTCGGCGATCTTCTTGCTGCTG
CTG--------GTTGGTGG-TGAAGCCTCAGCTGCTAGCATCTCGGGGGGCTTGC-CAAGGTTTTTTAGTG-CGACCTCC
CGATATGTTT-CCGCTGCGTCTTCATCT---CCTCGAGCTGGTCTGGTCGATCGTAGCCA-GGTCTTCAGGTTGTGTCTT
GTGTGCTGCTTGCTCGGGTTTGGTTGTGT-----GCTCGTGTATGG---TATGGTACTGTAAAAAGGAGGGACGGATAAG
CAAGTATT--ATGGTCCGATCCGTCCTTCCTTTCT--TGTGTGTGT----GCTTCTAGTATTATGG-T--CCGTTCTTAT
CAAATCGATACTACTGGTTACTCTTAAGCATTTGGGGTCGTGTTAATTTTTTCGACAAAGGG-----GATCGTGTTAA-T
TAGAAACCC-----GTTTGGCCACCGGAGGATTCTGCTTCAAGTTCTATC---ACGTTTTTGCTTGACCTCTGCATTTCC
ATTTTTAGGTTGCTTAACCTTTGCATGATGAGTGCAAAAGTTAGTCCCTTTCTATGTCCTGTCACCTGCGTGGCGCAAGG
AAAACATGGCTCAGCTTTGATTGAGGGACGACAATCGTCATAAGATTCC-AGGGAGAACAGAATAAATATGAAAATGAAA
AGGTGGTGATATTA--TACGAAGC---------------------------------ACTGTTGGCGCTCAAGTCTTAAT
CCATCTCCCACAGACCTTGCTTGTCCAAGTCAAGTCTCCGCCCGCAATCAACTTGCTGCCGATGCCAAAAGCCCAAAAGC
CCCTCTGGTTTGAACGCCTCGTGAAAAGTAACTCTAAACAAAGAG-----------------------------------
>chr1D_647
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---------GCCA--------CTAGCAGCAGCAGCCAACGTGGAAAGTACAAAGCGGGCCCACATTCGACCGTCCAAAAT
GT-AGATA----TGGACGCATTCTGCCGTGCCGAGTCACTGGCA-CGTCCCCACCTTACACCGGGCTACCCCACCCGTCA
CTGAGACGC--AATCTCCTGCCTGGTT--------------GAGCCCGAGC-------CTG----ATACGCTTTTGGGGC
CCACGCCCGAGCGCGCTTTTG---GGACCCGCC------ACCAGTGCTCTTTTCCGGCCAACGCCGCGCTCTGCTCCCCG
GCTA--CCGCCTATTTAATCCCGCTCTCAGAGAGAACCTGGAGTATACCCAGCCTCGACGGCGAAACAATCCACCAACCT
CTCC-CCT------------------CGCCGGAAGAATGGCCACCAAGGGATACCAGGCTCCAGCCCCGGCGATGCCCGC
GGCGGGAGGGGGCGCCGGTTCC------------GGCGGCGGCGGCGGCAGCGACAACAGGGTGCCGAAGGGGAGCATGC
CGCTGCGTCGCCGCGGCCAGGTCAAGGAGAAGATCATCAAGGACGTGGTCGCCGCGGTCGCCAACATGGCCGCGGGGCTC
GTCCGCGCCGACAAGAACGGCGCCGGCACCGGCGGTCTCCCGGCCGCCGGCGACGCCGGTGCCAAGTGAACAGCTCC---
-----------------------TGTGTTCACGCC----------------------------CGTCCTCTGCTGCTACT
CCGTGCTCATTTTTTGTGCGCGCAGCAGAGGCCGGAGCAAAATACTACTACTACCGGTA------------------TTG
T--TAAATTTCCGTCGCGTCGGCGTCAGT-------GGTGGGCGGATTCAGTTGCCTTATTTGAGGTAGCAACTGGTCTC
TCCATCCCTAGTT----------------------TCT----------------------CGATGATCTTCTCGCTGCTG
CTG--------GTTGGTGA-TGAAGCCTCAGCTGCTGGCATCTCGGGGGC--TGC-GAATGTTTTTTAGTGCCAACCTAC
TGATATGTTTGCCGCTGCGTCTTCATCTCCTCCTCGAGCAGGTCTGGTCGATCGTACGTCTGGTCTTCAGGTTGTGTGC-
---TGCTGCTTGCTTCGGTTTGATTGTGTTGTGTGCTTGT-----G---TACGGTACTGTAAAAAGGAGGGATGGATCAG
CAAGTATTTTATGGTCCGATCCGTCCGTCCTTGCTTGTGTGTGTGT----GCTCCTAGTATTATGG-TTCCGTTCTTTAT
CAAAACATAAATACTA-------TA--------------------------TATACTAAGCA-----TTTCGTGTTAA-T
GAGAAAC-----TTGTTTGGCCATCAGAGGATTCTGCTTCAAGTT-----------------------------------
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>SNPs
------S-------------------S-----------------------------------------------------
--------S--S--------------------------------------------------------------------
-------------------------------------------------S-----------------------S------
------------------------------S------------------S------------------------------
----------------------S-------------------------------------------------S-------
----------------------------------S----------------S--------------------S-------
------------------------------------S--------------------S----------------------
--------------------S--------------------S--------------------------------------
---S----------------------------------------------------------------------------
-S------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
----------------------------------------------------------------S------S--------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
-------------------S----S----S--------------------------------------------------
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-----------------------------------S-----------------------------------S--------
-----------------------------------S-------------------------------------S------
---SSSSSSSS------------------------------------------SSS------------------------
---------------------------------S-----------------------------SS-S-S-----------
--------------S---------------------S------------------S------------------------
------------------------------------------S-----------------------S-------------
---------------------------------------------------S----------S------S--------S-
----------S----------S------------------S---------------------------------------
------------------------------------------------------------S---------------S---
------S-------S----------SS------S-------------S----SS------S-------------------
--------------SS------------------------------------------------S---------------
S--------------------------------------------S----------------------------------
-------------------------------------------------------------------------------S
>forward_271
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-----------GTGATACGTTGTGGGGTGGT-------------------------------------------------
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>reverse_2336
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---------------GTACGAAGCACTGTTGTCGC---------------------------------------------
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