>input_sequence_86073
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----------------------------------------------------------------------ATGGCCTCAC
CCTTCCTTCCTTGCAACCAACCCCCTGCCACCGTGCACCCTTCTCCCATGGCGATGGCGATGGCGATGGCTAGAGAGATG
GATCTAGGCATCTGGCCCCGCCAGATCGAGGCGCAGGCC-----CGCTGGCCGGACGGCGGCAACGTACCTCCCCT----
----CCATG-----------TCCAGATGGGAAACAGCACGGTCAAGGTACGGTGGCTCCCGGAGACTCTCACGGCGGCCG
GGCCGGGCTCCCCCAGCTAG------------------------------------------------------------
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>chr7A_1_TraesCS7A01G403000
TGTATTCGGCATGGAAATCAGTAGACTTTGCAAATATCCTTTGACGACTTGGTTTTTACCTCCGGTTTGTAAAAGGACAC
GTCTGGTTCAATGGGCCAGTGTGCCAAATAATTGCTTGAAGATAAAGTGTCGCTCGCGTGCAGTGCATAACTTTTTATTC
AGATCAATTCTACCTAAAAGATATATAAGACCACCATATATACATCTAAACCAGTAATAATCTGTAGCTCACTGGCTAGT
TGATTACAGGGATGTTTGGTTCCCAGTCACAGTTTGCCAAGCTAAAATTTGGCAACCACAGTTTAGTTGGCATGTGTTTG
GTTTTTGCCACACTTTGGCTTGTCACACTTTATTGCCCATATGACCCATTTGTCATAGAGACAATTTTTTTGTTAACTTT
TGCCAAAATTTGGCGTCCAATTTCACAGCCACACTTGTGTGGCTTGCCATACTTGTGTGGCTAGCCACACTTTGACTTGA
CCACACTAGTATCCAGCCAAACAGACCCTACGTGCTTGCCTTGAACTCCGGAGTTGCTCTTACGGGCGGAAGAAAAGAAA
ATGAGCAGGAGGAGGGTTTTTTTTTGAGGGGTGGAAAACATTATGGGTTGAACGGGAGTATTTATCATGGCTTGTGAAAT
GTGAATGGAAGCGGACCTTGCTACTTGGTTGGGCCACCCCTCGGTCGAGTCAGTCAGGCGGTCGGTCAGGTCAGGCATGA
CGTGAAAATCCGTGCGTGCCCATATACGGATTGCAAAAGAAAGAAAGAGAAACCCCACGCATGCGCATGCGCCTGCCTGC
CACCCACCATACG--TATTAACTTTTGTCAAATACGTACTACTAAATCGGTTGTCAGATCTGGATGCGCCT---------
TATCTTCTCGCTGCTGCCTGGATCCAACAAGGGAAACCCTAGCCTAGCCTAGCCGCCTCTCTCTCCTGCTCCT-----CT
CCTCAGATCTCCGGCCTCCTCCTTCCAACTGCCTGCCACCACGGAAG--------------GATCGATCGATGGCCTCAC
CCTTCCTTCCTTGCAACCAACCCCCTGCCACCGTGCACCCTTCTCCCATGGCGATGGCGATGGCGATGGCTAGAGAGATG
GATCTAGGCATCTGGCCCCGCCAGATCGAGGCGCAGGCC-----CGCTGGCCGGACGGCGGCAACGTACCTCCCCT----
----CCATG-----------TCCAGATGGGAAACAGCACGGTCAAGGTACGGTGGCTCCCGGAGACTCTCACGGCGGCCG
GGCCGGGCTCCCCCAGCTAGCGCTTGTTCGTCTCATGGGT------------GGGTGAGTCCTCTGCTACTGCTAGGCTA
GCTTCTTT-------CTTCTTTCATCTAATCTAATCTAATCCCCGGCCCCCTCTAATATAATCTAAGAAAGAAAACGAGT
CGCATCTCACGAATCCATCCTTGTTTACCGCCATGTTTCTTCTGTCTTGGCTTGCAGGTTGG----ATCTGTCTGTATTT
TATGTTACAATATTACA-------GATATTTCCCATCCATCGAGCAAAACGAATATCCCAGCTGTGTGCATAG-------
------------------------------------------TTTTTTTTAATCTTCT-------GTATATCAGCGGATG
ACAAAGCAAAAAAAAAAATCCTTGTTC-----AGAAGATTCACCGGAATACGGTTTTTAGGGTGTTTGGATCTGTGGGAA
TTTTTCCTAAAAGGATATCAAACTCT-TTGGGATTTTTCCCAAGAATTCATGCAGTCTATTATTTTTCAAGAATTTTTT-
-TCTCAAACCTCTTCTTGCAATTCCTTTA------CTTTTGGTGGCCTATAAAGCACTCTTTGATGAG---TTTTTTTTT
CCACACCCCTTAGTACCACTTTTATGGATCAT-----CCGAATTAATACAGAGAACTATAACAATCCA---TACATTTTA
TTAGCCTAGCGGTGTCGCTAAAGCCTTTTAATCTTTAAGCACCAATCCTCACATTCTTTGCTTTCATTGTTATAGTCCAC
TTTTCACTGGTGCTAAGGTGGTATGAGGGTATGTGCTAAGATTAAAAAACTTGGTGTCCAATGCTATGCTAGAGTAATCT
TAATTAGTCATTTTAGATTAGTGATCTAAAATGATCTCATATTTCTTTACTCGTAGTAGAATCAGAGGAAAATAGTTGGA
GTATGAAAATTTTCTTTGGTGCGTCTATTTCGTTTAGGAAAGAAGAGAAGGAAAAAAAGAAACAGAGTTTTCCTTTAGTC
CATGTACCAAAGATGAGAGTGAGTTTTTTTAGCATAAGAACATGCAAGTGATACTTTTGCTTGTGATTTGATTTGACTTT
TAACAACAAAT
>chr5A_679
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--------------------------------------CCTCGGTCGAGTCAGAGGT------GGTCAGGTGATGCATGA
CGTGAAAATCCGTGCGTGCCCAC--ACGGATTGCAAAAGAAAGAGAAA---------------CGCGTGCGCCTC-----
--CCCACCATACG--TATTAACTTTTGTCAAA-------------ATCGGTTGTCAGATACTCAGATCTGGGGGGGCGCC
TATCTTCTCGCTGC---CTGGATCCGAAAC-----------------CCTAGCCGCCTCTCTCTCTCTCTCCTG------
---CAGATCTCCTACCA------------------CTACCTCCTTCCAACCGCTCTCCTCAGATCC----ATGGCTTCAC
TCTTCCTTC--------CAACAGCCTGCCACCGTGGTCC-----------------------------GCTGGCGAGATG
GATCTAGCCCGCCGGGTT---------GAGACGCAGGCC-----CGCTGGCCGGACGGCAGCAACGTGCGTCCCCTCACC
CGGTCCATATCCACAACTACTCCAGATGGGAAACAGCACGGTGGCGACCGGGCCGCTCCCGGAGACTCTCACGGCGGCCG
GCGTGCGAGCGTGT-----GCGCCTGTTCCTCTGATGGGT------------GGGTGAGTCCTCTGCTAGCTCCAAGATG
CTGCTACGCCACGAGCTTCTTTCATCTAATC---CCCTCCTC----------------TAG---------GAAAACAAGT
CGCATCTGACGAATCCATCTTTA-------CCATGTTTCTTCTGTCT----TTGCAGGTTGG----A----TCTCTATTT
TATGTTAT-----TATTACAGATGATTTGCATA---------AGGAAAACGAACAGAGAGT-------------------
----------------------------------------TTTTTTTTTAAATCTTCT-------GTATATCACCGGAGG
ACAAAGCAAAAAGAGAATCG-TTGTTC-----AGAAGATTCACCGGAGTACGGTTTTTAGGGTGTTTGGATCCGTGGGAA
TTTTTCCTAAAAGGATGTGAAACTCTTTTGGGATTTTCCCCAAGAATTCATGCAGTCTATTATTTTTGAAG-ATTTTTT-
-TCTCAAACCTCTTCTTGCAATTCCTTTA------CTTTTGGTGGTGTATAAAACACTCTTTGATGACGTCTTTTTTTTG
CCACGCCCCTTAGTACCACTTATATAGGTCCTGATAC--------------AGAGATGTAACAATCCAAAGTACATTTTA
TTAGCCTAGCTCTGTCGCTAAGCCTTTTGA---TCCTAGCACTTACCATT-----CTTTAGTGT--TTGT--TAGTCCAC
TCTTCGCCAGTGCTAAGGTGATATGAGGGTATGTACTAAGATTAAAAAACTTAGTG------------------------
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>chr6B_756
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-----------------------------------AAAGAAAGAAAGAGAAACCCCACGCGTGCGCCT--GCCTGCCTGC
CACCCACATACGTAATATTAACTTTTGTCAAATAC-------TAAATCTGTTGTCAGATCTG-----GCCT---------
TATCTTCTCGCTGC---CTGGATCC--------AAACCCTAGCCTAGCCTAGCCGCCTCTCTCTCCTGCTCCTCTCCTCT
CCTCAGATCTCCGACCA------------------CCACCACGGAAG--------------GATCC----ATGGGCTCAC
CCTTCCTTCCTTGCAACCAACCCCCTGCCACCGTGCACCCTTCTTCCATGGCGATGGCGATGGCG------AGAGAGATG
GATCTAGCC--------CCGCCGAATCGAGACGCATACCCGCCTCGCTGGCCGGACGGCAGCAACGTACCTCCCCTCACC
CCGTCCATG-----------TCCAGATGGGAAACAGCACGGTGGCGACCG-----------GAGACTCTCACGGCG----
----------------------CTTGTTCCTCTTATGGATGGATGGGTGACAGGGTGAGTCCTCTGCT------------
-------T-------CTTCTTTCATCCGACGAATCCCCCCTC----------------TAATCTAAGAAAGAAAACGA--
------------ATCCATCCTTACCGGCCGCCATGTTTCTACTGTCTCGTCTTGCAGGTTGGTTGGATCTCTCTCTATTT
TATGTTACACTAGTATTACAGATGGATATTTCCCATCGATCGAGTAAAACGAATATCCCAGCCGCATCAGGCCCTGTTAG
GCCGTCTCCTCTCCTGTGTATGTATGTGCAGAGCTTTTTGTTTTTGTTTTAATCTTCTGTATTATGTATATCACCGGAGG
ACAAAGCAAAAGAAAATAAATGCTTCTTCAGAAGAAGATTCACCAGAGTACTGTTTTCAGGCTGTTTGGATCTGTGGGAG
CTTTTCCTAAAAGGATTTCAAACTCT-TTGGGATTTTTCCCAAGAATTCATGCAGTCTATTGTTTTTTAAGAAAATAAAA
ATCACAAACCTCTCCTTGCAATTCCTTTATTACTTCTTTTGGTGGTGTATAAAACACTCTTTGATGAGTTTTTTCTTTTG
CCACACCCCTTAGTACCACTTATAGTTATATAGGCCCCCTAATTAATACAGAGA----TAACAATCCAAAGTACATTTTG
TTTGCCTAGCTCTGTCGCTAAGCCTTTTGA---TCTTAGCACTTGTCCTCACAAACTTTAGTGTCATTGT--TAGTCCAC
TTTTCGCCAGTGCTAAGGTGATATGAGGGTACGTGCTAAGATTAAAAAACTTAGTGTCCGATGCTATGCTAGATTAATCT
TAATTAGT------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------SSSSSSSSSS--------S-S------
----------------------SSS-----------------------------------S-----S-------------
-----------------------------------SSSSSSS--------------------S-SSS-------------
--------------SSS--------S-S-SSSS-----------------------------------------------
-------------S--SSSSSSSSSSSSSSSSSSS------------------------------SSSSS----------
--------------------------------------------S--------------------SSS------------
-------S-SS-S--SS-----SS------S----------------------------S--------------------
------------------------------------------SSS-SSSS--SS--------------------------
-SSS-S-SS-SSSSSSSSS----------S---S-----------------------------------SSS-S-S-S-S
SSSSSSS------------------------S-SS-SSSSS-SSSSSSSSSSSSSSSS----------------------
-------S--------------SSSSS--------------------S-S--------------------S---S-----
---------S--S--SS--------------------S------S-----------------S-SS-SSSSSS-------
-------------------------------------------------------------------------S----S-
------------------SSS--------------------------S--------------------------------
----------------S--------------------------------------------------S------------
---------------------------------------------SS------S-------------------------S
---------------------S---S----S--------S--------------SS-S----------------------
----------SS---------SS-S---S-SSS-S-S-----SS---------SS----SS-S-------SS--------
-----S-SS-----------S-------------------------------S------S-------------S------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_282
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----------------------CCAGTCACAGTTTGCCAAGC--------------------------------------
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>reverse_1401
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----------------------------------------CCCCGGCCCCCTCTAATATA--------------------
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