>input_sequence_86065
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---------------------------------ATGGATCAGGGCTGGGCGAGCTGGTTCGGCGCCGGCGTCACCTCCGC
CTTCTTCGCCTCGCTCGAGCGCTGCTCCTGCATCAACCTCTCCACCGACGACGACGACGACGAGGAAGAGGCCAACGACC
GCCCCCTCATGCT------CGCCGCCCCCTCCGACCAGCCCCAGCTCGACGCCGCCCCCGCCCCCGCCGTCGCCGCCGGC
AAGGAGGAGGAGCAGGAGCAGGGGCCTCCCCTCCCGCCCGTGTGA-----------------------------------
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>chr6A_1_TraesCS6A01G409500
GCATGACTTATGGAGTGTTTCTGAATTTGGGTGGAAACTTCTTTTTTTGAGACAAATTTGGGTGGAAACTGAACTGGTTA
TGTGTT--------GCTGGGCCTTAACCAGATCTGTGCTTGTGTTTAGCTGGGCCGCAAACGGGCTTGTAGATGGGCCGT
CATGCGACCAACATGCCTGAATTGCCGCAAATTCAACCAGCTTAACTTTATGGACTATTGTCTAAAAAAAGCTTAACTTA
TGGACTGTTTCTTATAAAAAGAAAAGTTTAACTTACTGGAGTACTCGGAAATCAGATAA-TGCCCCTATGCCCCCCTAAA
AAATTTAGACATCCCCATACACCAAACATT----TGGAGCCATCTCGAAAGCTATTCG------TAAATGTACCTTGCAA
AACCCCCACGCCCAACTGCCGCGTG-------GAAAGATGGTCTCCGGCGCTTGTCGCTAGGTCGCCGCCGAAGACTTAG
TAGATCGCAATCGAAACTTTCTCTTCAACCGTGCGAAGAACCACCACCAAACACACGG-GGTGAATTATGAAGCGGGCAT
GTGCAGTGAGCCAACAAGGC---GAGGCCATGCGGCGATGGAGGAGGAGGCGTGACCGAGAGCGACAAGCCGAC------
--ACACAAGGTGCGAGG------TTTTTGCTCCTAAAGGGTAAGGCACAACTGTCCTTCACTTCACGCGCGCTCTAATGT
GTGCCTCGCACATTAAAGCCGTGT-------------------------------GCCGAACCACACACCCTCCGGTGAT
TTA-----------------------------------------------------------------------------
--------------CATATAATTTTGCGC------AAAAAAATGTGTGTCA-----------TGGTTAGTATGGTCTTCA
TGGATGTGTATTTGGTATGCAGTTAATGTGAGAAAAGAACCTCTG-----------------------AAAAAGAGGAGC
ACAAGTGTATTT------GGGTTGGGGTTGGGGAGAAGTATCCCGTGGATCTCGCCAAGTCCCCATTCCCCTCCCCTCCC
CTCTCCTC------CAGTGAGTCCTCTCTGCTCTCGCCTAGTCGCCTCCCCGTCTCCC----TCCCCACCCCTCTCACCC
---AACCCTAGCGAGCAGAT--------CGCCGATGGATCAGGGCTGGGCGAGCTGGTTCGGCGCCGGCGTCACCTCCGC
CTTCTTCGCCTCGCTCGAGCGCTGCTCCTGCATCAACCTCTCCACCGACGACGACGACGACGAGGAAGAGGCCAACGACC
GCCCCCTCATGCT------CGCCGCCCCCTCCGACCAGCCCCAGCTCGACGCCGCCCCCGCCCCCGCCGTCGCCGCCGGC
AAGGAGGAGGAGCAGGAGCAGGGGCCTCCCCTCCCGCCCGTGTGACCCGCTCCCTCCTCCCAT-----------------
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CCATCGCTTGCGTACGGCTTACTCCTCCC-----------CCCGTCCGCGTCCTCTGCTCTAGATCTGATGATGAACTG-
---------CTGCTCGTCGCTCGTGGCCGACTAATAAATCTCGCCGATTTTGTTGCTGGCCTGCCATGTTTAAATTAATT
GAATTAGTAGTATGCCTATCTGTGTGTGT-----------GTGTGTGTGTGTATGCCATGC-CATGGATTCCTGTTG-TT
GTGTTCATGTGAA--TATCATCATGCCGTCGTGTGGTAATTTCTTCCGTAGCGGATCGATGTGTCAGATGGATCATGGAT
CAATCTCTATAT---ATCTGTTGTTGAATTGCTGCCCTGTGAATGAATG----GTTCTACGCTCCGCGATGAACGGATCG
ATTTGCGGCATACGGCATGTCGACCTGTTCATGTAATGAGTTGTTGCTTGCCACAGCATATAATAGATCCCTGACGAGTG
GAAATGGCCGATGCAATGCTTGCAAATGGTTTCTTTGATATTTTTCTCACAAGTCTTGATGCCTCGTCTTGGATTGTGGT
ATGTTAAATGGATGGATTGTG-----------------------------------------------------------
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-------------------------------------TCAGTTAGTGTATTGTTGTATGCCATCAGTTCTGTGGCTGTGT
GACTGTCGAGATGGACCTGATGGCTTTCGTGATTGGGCTAAGCTTGTTCATATGAGCAATTGGTAGGGTTTTGCTCTTAG
ACTGCTGATGAAGATGCCAAAGATCCGTTCGACCGTGCTTGCCTC-ATGTGTTTATGTGGATATTATGCTTGTCCTGTAA
C----------TTGTAGCGGATTGCTATATGTCGTGTGAAATTGCCGTTTGTTAATTGATGTCCTGTGATTCTACGTCGT
GCAGTGATCAGAGTGATCAGATTGGGGTGCAGCGTGGCTTTGTCTACCTGCTATGTGTTCCTGATGACATTGTGCGGCTC
TTAGGAGGAATCAAGGGTTGGTTGCTGGTTGCCACTAACCCTAATGCTAGCATATTTCGCAGCAATCGAACTGC-AATTG
TGGGGACTCTAAA
>chr6D_1
GCATGACTTATGGAGTGTTTCTGAATTTGGGTGGAAACT-------------------------------GAACTGGTTA
TTTGTT--------GCTGGGCCTTAATCAGATCTGTGCTTGTGTTTAGCTGGGCCGCAAATAGGCTTGTAGATGGGCTGT
CATGCGACCAACATGCCTGAATTGCCTCAAATTCAACCAGCTTAACTT-------------------------------A
TGGAGTGTTTCT---AAAAAAAGGGATCAAACTTATTGGAGTACTCAGAAGTCAAAGAA-CCCCCCATGAT--CCCCTAA
ATAAATAGATATTCCCATGCGCCACACATTAATTTGGACCTATCTCAGAAGCTATTCC------TAAATGTACCTTGCAA
AACCCCCACGTCCGAGTGGCCACCTCGAATTCGAAAGATGGTCTCCGGCGCTTGTCGCTAGGTCGCCGCCAAAGACTCGA
TGGATCGCGATCGCAACTTTCTCTTCAATTGTGCCAAGAACCACCACCAAACACACGG-GGGGAAGGATGAACCGGGCAT
GTGTAGTGAGCCAACAAGGC---GAGGCCATGCGGCGATGGAGGAGGAGGCGTGACCGAGAGCGACAAGCCGAC------
--ACACAAGGTGTGAGG------TTTTTGCTCCGAAAGGGTGAGGCACAACCGTCCTCCACTTGACGCGTGCTCTAATGC
GTGCCTCGCACATTAGATCCGTGT-------------------------------GACAAACCACACGCCCTTTGGTCGG
ACCGACGAT----------------------------------------GACGCCTTCACTTCCTTTTAAATTTATGACG
ATGACATAGTACTTCATGTAATTTTGCGC------AAAAAGATATGTTTCA-----------TAGTTAGTATGGTCTTCA
TGGATTTTATATTTG-----------------------------------------------------------------
------GTATTT------GGGTTGGGGTTGGGGAGAAGTATCCCGTGGATCTCGCCAAATCCCCATTCCCCTCCCCTCCA
GC-----------------AGTCCTCTCTGCTCTAGCCTAGTCGCCTCCCCGTCTCCCATCC-CCCCACCCCGCTGACCC
---AACCCTAGCGAGCAGATCGCGTCGCCGCCGATGGATCAGGGCTGGGCGAGCTGGTTCGGCGCCGGCGTCACCTCCGC
CTTCTTCGCCTCGCTCGAGCGCTGCTCCTGCATCAACCTCTCCACCGACGACGACGACGACGACGC---------CG---
ACGCCCTCATGCTCGCGGCCGCCGCCCCCTCCGACCAGCCCCAGCTCGACGCCGCCCCCGCCCCCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CCATCGCTTGCGTACGCCTTACTCCTCCC-----------CCCGTCCGCGTCCTCTGCTCTAGATCTGG---TGAACTG-
---------CTGCTCGTCGCTCGTGGCCGACTAATAAATCCTGTCGATTTTTCTGCTGGCCGGCCATGTTTAAATTAATT
GAACTAGTAGTATG----TCTCTCTGTGT-----------GTGTGTGTGTGTATGCCATTACCATG----CCTGTTGTTT
GTGTTCATGTGAATATATCATCATGCCGTCGTGTGGTAATTCCGTTCGTAGCGGGTCGATGTGTCGGATGGATGATGGAT
CAATCTCTATAT---ATCTGTTGTTGAATTGCTGCCCTGTGG----ATG----GTTCTACTCTCCGCGATGAACAGATCG
ATGCGGGGCATATCACTTGTCGACCTGTTCATGCAATGAGTTGTTGCTTGCCACAGCAT---ATAGATCCCTGATGAGTG
GAAATGGCCGATGCAATGCTTGCAAATGGTTTCTTTGATTTTTCTCTCAAGC------------CGTCTCGGATTGTGGT
ATGTTATATGGATGGATTGTG-----------------------------------------------------------
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-------------------------------------TCAGTTGCGA-ATTGTTGTACGCCATCAGTTCTGTAGCTGTGT
GACTGTCGACATCGACCTGATGGCTTTCGTGATTGGGCTAGGCTTGTTCATATAAGGAATTGGTAGGGTTTTGCTC-TAG
ACTGCTGATGAAGATGCCAAAGATCCGTTCGACAGTGCTTGCCTG-TTGTGTTTATGTGGTTATTATGCT-GTCCTGTAA
CTTGTAACGGGTTGTAGCGGGTTGCTGTATGTCGGGTTAAATTGACATCGGTTAATTCTTGTCCTGTGATTCTACGCCAT
CA---------AGTGATCAGATCGGGGTGCAGCATGGCTTTGTCTACCTGTTATCTGTTCCCGATCACATTGTGCAGCTC
TCAGGAGCAATCAAGGGCTGGTTGCTGGTTGC------------------------------------------------
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>chr6B_1
GCATGACTTATGGAGTGTTTCTGAATTTGGGTGGAAACT-------------------------------GAACTGGTTA
TGTGTTGGCATGTTGCTGGGCCTTAACCAGATCTGTGCTGGTGTTTAGCTGGGCTGCAAACAGGCTTGTAGATGGGCTGT
CATGCGACCAACACGCCTGAATTGCCTCAAATTCAACCAGCTTAACTT-------------------------------A
TGGAGTG-TTTTTCAAAAAAAAAAGATTAAACTTATTGGATTACTCAAAAGTCAGAGAATCCCCCTATGAT--CCCCTAA
ATAAATAGACATTCCCATGCGCCATACATT----TGGACCCAGCTGGGAAGCTATTGTAACTTCTAAGTGCACCTTGCAA
AACCTGCACATCCAAGTGGCCACCTC------GAAAGATGGTCTCCGGCGCTTACCGCTAGGTCGCCGCCAAAGACCCGG
CGGATCACAACCGCAACTTTCTCTTCAACCGTGCAAAGAGCCACCACCAAACACGTGGAGGTGAATTATGAAGCGGGCAT
GTGCAGTGAAGCAACAAGATGATGAGCCCATGCGGCAAATGGAGGAGCGTGCGG-CCGGGAGTGACAAGCCGACGAGGAA
ACACACAAGGGGCAAGATTTTTTTTTTTGCGTCGAAAGGGTGGGGCACAGATGTCCAACAC-----GCGTGCTCTGATGC
CGCGTACATAAA--AAAGCCGTGTGTCGTCACACCGCAAAACCTCTCCGCATGCCGCCACGCCACACACCCTCTCGTTAG
ACCAGTGATTTTATTTTCTTTTTGCGGGGCGTTAGGCCGATGATTCACAGGCGCTTTCACTCCTTTCTGAATTATGATGT
GTATTTGGTGCAGTGAATATGTGTAGTAGTTTTGTAAAAAGAAATGTTCATCTCATACGGACTAGTTAATATGGTTTTTA
TGGATGTATATTTGGTGTGCCTTTAATGTGAGAAAAGATCAAAAGAAGCATTCAAAAAAAAATGAGAAAAGAAAAGGAGC
ACAACTGTATTTGGGTTGGGGTTGGGGTTGGGGAGAAGTATCCCGTGGATCTCGCCAAATCCCCATTCCCCTCTCCTCTC
CTCTCCTCTCCTTGCAGTGAGTCGTCTCTGCTCTCGCCTAGTCGCCTACCCGTCTCCCATCCTCCCCACCCCTCTCACCG
CCGAACCCTAGCGAGCAGATCGC-----CGCCGATGGATCAGGGCTGGGCGAGCTGGTTCGGCGCCGGCGTCACCTCCGC
CTTCTTCGCCTCCCTCGAGCGCTGCTCCTGCATCAACCTCTCCACCGACGACGACGACGACGACGC---------CGACG
ACGCCCTCATGCTCTCCGCCGCCGCCCCCTCCGACCAGCCCCAGCTCGACGCCGCCCCCGCC------GTCGCCGCCGAC
AAGGAGGAGGGGCAGGAGCAGGGGCCTCCCCTCCCGCCCGTATGACCCGCTCCCCACATCCAT-----------------
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CCATCGCTTGCGTACGCCTTACTCCTCGTCCCGTCTGAGTCCCGTCCGCGTCCTGTGCTCTAGATCTGA---TGAACTG-
---------CTGCTC-------CTGGCCGACTAATAAATCCTGCCGATTTTGTTGCTGGCCATG-----TTAAATTAATT
GAATTAGTAGTACTA-------------T-----------GCGTGTGTGTGTAT-----GC-CATGGATTCCTGTTG-TT
GTGTTCATGTGAA--TATCATCATGCCGTCGTGTGGTAATTTCTTTCGTAGCGGATCGATGTGCCGGATGGACGATGGAT
CAATCTCTATATATCATCTGTTGTTGAATTGCTGCCCTGTGG----ATGAATGATTCTACGCTCTGCGATGAACAGGTCG
ATTTGCGGCATATGGCTTGTCGACCTGTTCATGTAATGAGTTGTTGCTTGCCACAGCATATAATAGATCCCTGATGGATG
AAAATGGCCAATGAAATGCTTTCAAATGATTTCTTTGATTTTCCCCCCTCATGTCTTAAT-----------GATTGTGTG
ATGCCCAATGTAATGCTTGCATATGTTGTCCACTCTCCACTCTTGGTCAAATATGATACTACAAAATAATCTATGGGGTA
TTGAAGAACTGCATGTGTTTCGTCATCGTGTTAATGTGTATACTCCTATAAACAGAGTACTGCATCGGACGGTTCACTGC
ATACATGATGACATACCCTGTATCGTCCAGAGAACTAACTACATCCATGAATCGCTTTCCTGTCATTATATGATGATGGA
CATGTTGAAGATGCACTTGTTGAAGTGGTTGTATGCTTCAGTTAGCCTATTATTGTACACCATCAGTTCTGTAGCTGTGT
------CGAGATCGATCTGGTGGCTCTCGTGATTGGACTAAGCTTGTTCATATAACCAATTGGTAGGGTTTTGCTC-TAG
ACTGT---------TGACGAAGATCCGTTTGATAGTGCTTGCCTGTTTGTGTTTATGTGGATATTATGCTTGTCCTGTAA
C----------TTGTGGCGGATTGCTCTATGTCGGATGAAATTGCCATCGGTTGATTGATGTCCTGTGATTCTACGCCGT
GCG---------GTGATCAGGTTGGGGTGCAGCATGGCTTTGTCTACCCGTTATCCGTTCCCGATGACATTGTGCGGCTC
TCAGGAGCAATCAAGGGTTGGTTGCTGGTTGCCACTAACCCTGATGCCAGCATATTTCGCAGCAATCAAATTAATAATTG
TGGCGATTTTAAA
>chr5D_1014
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----------------------------------------------GGGCGAGCTGGTTCGGCACCGGTGTCACCTCCGC
ATTCCACGCCTCGCTCGAGTGCTTCTCCAGCATCAACCTCTCCACCGACGACGATGACGAGGAGGAAGATGCGAATGA--
---------------------CCGCCCCCTCCGACCAGCCCCACCACGACGCAGCTCCCGCCCCCGCCGA---CGCCCGC
AAGGAGGAGACGACAG---AGGAGCCTCCCCTCCCGCCCGTGTGACCGGCTCCCTCC-CCCAT-----------------
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CCATCGCTTGCGTACGCCTTACTCCTG-----------GTCTCGTCCGTGTTCTTTGCTCTAGATCTGA---TGAACTGT
TGCTTGCTGCTGCTC-------GTGGCCGATCAATAAATCTCGCCGATTTTGTTGCTGGCCATG-----TTTGCTTAATC
AAATTAGTAGTGTG----TGTGTGTATCCTAAAAAAAGTAGTATGTGTGTGTAT-----GA-CATG----CCTGTTG-TT
GTGTTCATGTGAA--TATCATCATGCTGTCATGTGGTAATT----TCATAGCGGATCGATGTGTTGGGTG----ATGGAT
CAATCTCTATAT---ATCTACTGTTGAATTGCTGCCCTATGC--------ATGGTTCTACGCTCTGCGATGAATAGATCG
TTGCGCGGCAA--GGCTTGTCGGCCTGTTCATGTAATGAGTTGTTGCTTGCCATAGCATATA---GATCACTTATAAATG
AAAATGGCCGAT--------------------------------------------------------------------
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>SNPs
---------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
-------------------------------------------------------------S---------------S--
--------------------------S---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
----S--------SS-----S---SS--S------S----------S---S-----S---SS----SSSSSSS---SS--
-S-SS-------S-----S-S---S-------------S--------S---------S----------------------
----------S----S--S-SSSSS---------------------------------------------S------SS-
-S-----------S--------------------S---------------------------------------------
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---------------------------------S-------S---------------S-----S-----S---------S
----------------------------------------------------------S--------------S---S-S
SSS-----------------------------------------------------------------------------
-----------------S----------------------S--S---S---------------S----------------
-------S--------S---SS----------------S-SSSS--------------------------S--S------
----S-----------------------------------------------------S---------------------
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---------------------------------------------------------------------S--S------S
S-S-----------------------------------------------------------------------------
----------S----------------------------------------------S----------------------
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----------------S----------------------------------------------------SSS--------
-------------------------------------------------------------S------------------
--------------SSSS--------------------------------------------------------------
---------------------------------------------S-------------------S-------S------
-----------------------------------------SSSSS----------------------------S-----
------------S---S---------------------------------------------------------S-----
---------------------------------------S---S-------S-----S--SSSS-----S----------
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---------------------------------------------SS----------S--------------S-------
------------S----------------------------------------S----------------------S---
---------------------------------S----------S-S---------------------------------
--------------------------S-------S-----------S-SS--------------------------S---
--SSSSSSSSS----------------------S----------------S---S------S------------------
-S-----S----------------------------------S----S-------------------S--S-SS------
---S--S-S----
>forward_779
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---------------------------------------CACATTAAAGCCGTGTGCCG---------------------
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>reverse_2942
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-------------------------------------------------------------TGATGACATTGTGCGGCTC
T-------------------------------------------------------------------------------
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