>input_sequence_86049
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----------------------------------------ATGCCACGCCGTGCGAAGCTTGTTGATGACACCAAATGGA
GGGAAGTAGCATTTGCTAACAGATATGCCCTGTTTATCGGATACCTGTCCATGGCCATCAGGGGTCTGGGCTTCCTGGTG
CTTACTTGGACCACCGTCGTGCTTCTTGGTGGATTTGTCTCTACACTGCAGAGGAAGGACTTTTGGTGTCTTACATTCAT
TACCCTTGTGCAGACAGCTGGGATA-------------------------------------------------------
------------------------------------------------------GTCTTGTTAAAATTTGGTTGA-----
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>chr3D_1_TraesCS3D01G518300
GGACTCTACAACAAGGTTAATTCTAACAGAGATCTCTTCAACTCGATAAAAAAAATCGTTTACGGTGATTAGCCTCTCAA
TCTTGATTCTGCGTGCATTTGTGGTGGTAGATGGAAACGGGTGGCCGCGTTGACTGGCGCGAACCGGGCCATCAGGTTTG
AGTTCAGAAAAGACAGTAGGGGGCAACAAAGTCGTGCTTCTGAAATACTCCCTCTCTCCGTAAAGAAATATAAGCTTATA
TTTGTTTACATAGTGAGTACTATCATGTTTTATGATTTCATTTTTGGAATTTCTACACTTATTTCGGGATGGAGGGAGTA
ATACATAAAAATATTCCCTCCACGGAATTAGTTGTCAAACAGATGGCCAAACTCCGGATTTGGACAGTGGAGTGCAGAAT
CAACATTTGGAATGCGGATTTGGTGATGTTGGAGGCCCTTTGATGTCAGAAGATTATATAAGCCACGCATAGGTGAAGGG
CCTGGAGAGGATACTGGAATAGCTTGCTTGTTGTTCAGCTGTCCAGGCTGACTGTTGAACTATTCTTATTAACGAACCTT
GATTGCCGTTAGTCAAGGTCTAAACCCATTCTTTGTGCGGACGTAAGCATATAATATTTTCTCCCAAGAGGCCAACATCA
TAGCCTTGTTAGTTCAAGTCAATGGCATGTTCATCATTGGCGATACATATTGGACTTTGGCTGCCCTTTCCTTTGTTCCT
GCTCCGCCTGGTTCAGTCGAGCTATCGTTCTGTCCTCGCAGCAATACTCTAAGTGGGGCCTCCACATCTTGCAGGTGAGG
TCAATCGATAACTTGAGTGCATATGAGCATATGATTTTCTTTATTTTTCAATTATTTTTGAAGGATTCAGTTCAGTTTCT
TTTGTGCATGGAACTAGTATAATCCTCTCCCAAGTCGTTTATATTCACAATTTGGAGGACTCGTTGATCGAGCATGCACA
TAGTGATCATATGGACTGCCCCTCTATTTTTCAGGGAGAGATGCCACGCCGTGCGAAGCTTGTTGATGACACCAAATGGA
GGGAAGTAGCATTTGCTAACAGATATGCCCTGTTTATCGGATACCTGTCCATGGCCATCAGGGGTCTGGGCTTCCTGGTG
CTTACTTGGACCACCGTCGTGCTTCTTGGTGGATTTGTCTCTACACTGCAGAGGAAGGACTTTTGGTGTCTTACATTCAT
TACCCTTGTGCAGACAGCTGGGATA-------------------------------------------------------
------------------------------------------------------GTCTTGTTAAAATTTGGTTGATGCTC
AACTTCTTTGTATATATTTTTGAGTGATTCTTCCTGCTTATCTAACTTGGAGGTACA----AACAACAGGATCTTGAATG
TTCTTCTCACTCAAAAGTTGAGCTATATTGGGCAGTTTTTTGGGGCCATTATGGATGTTGGATATACCGTGGTGACTGGT
AACACTCTCCAGCTTAAATTCAGCAACTTAAAAGATGTCGGAATGGTTGTTGGAGTAGTTGTGTGTTGT---------AT
TTTGTTATGCCCTCTGGCAGCTGTCTATGTGTTTGGGTTGTTAATTTCGGCCGGGATTTC-AGTGTGGCGTCTGAGCTAA
TGGGACTATGGGAGTGAGGATGATGGACTTGGAAACCTGAAGCCATCCTTGGATATCTTGTACTCCCTTGCTCTGCTCCA
GGGTGTAGTTTTCTACTACAGGGCCATCTTTGGTTTTGTCAAGGGAAATGTAGTGAATTCAATAATTGAACAGGGAGGAT
TTGGTGATCAGAGTCACACTCCAGTTTCGGATTACTTAACTGAAACAGTGACCGGGTGTGAAAAGGATACATCATTCGCT
AGTGGAAGGAACCTCATCACATATGCTGTGGACCTGATGGTGTCAAAGTCACCTGATGACTACCTTTCCGGGGTAAGGAT
CCTTGACGCCTTCGCCAGACGGCTGCAGACAGTGGCCAGAGAATGGGAAGAAGAAGGTACCCTATACATTCCAGACGCAA
TGAAGGAATCCATGCAGCGGCACATACTCATGAAGTATCTGACTGTGTCTGCATCCTCTGCTGACATACTGCAGAAACTG
CTGCAGACATTGGGCTGCAGAAGCATATATGACAGAGAGACGAGGGAGCATGGGGCGAGGATAGTTACGAGTATTGCGGA
GGACATCTCTCTGGAAGACTTCCCAAGGGGAATCTTCTACATATCTTCCCTCATCGGCACATTTGAAGAATACCGTGTAC
TCCAACCATATCAGCTAGACTGGCTATACGCGACATACCAACAAGATTG
>chr3A_517
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------------------------------------AGCTGTCTAGGCTGACTGTTGAACTATTCTTATTAGCTGAAGG-
----GCCATTAGTCAAGGTCTAAACCCATTCTTTGTGCGAACGTAAGCATATAATTTTTT-TCCCAAGAGGCCAACATCA
TAACCTTGTTAGTTGAAGTCAATTGCATGTTCATCATTGGCGATACATATTGGACTTTAGTTGCCCTTTCCTTTGTTCCT
GCTCCACCTGGTTCAGTCGAGTTATAGTTCTCTCCTCGCAGC-ATACTCTAAGTGGGGCCTCCACATCTTGCAGGTGAGG
AATCGATCC--CTTGAGTGCATATGAGCATATGATTTTCTTTATTTTTTTAT--TTTTTGAAGGATGCAGTTCAGTTTGT
TCCGTGCATGGAACTAGTATAATCCTCTTCCAAGTCGTTTATATTCACAATTTGGAGGACTGGTAGGTCGAGCATGCACA
TAATGATCATATGGACTGGCCCTTTGTTTTTCA--GAGAGATGCCACGCCGTGCCAAGCTTGTTGATGACACCAAATGGA
GGGAAGTAGCATTTGCTAAC------------------------------------------------------------
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>chr5D_1010
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-------------------------------------------------CGTGAGAAGCTTGTTGATGACAGTTGTTGGG
CAGAAGTAGA---GGCCAAGAGTTATGCCCTGTTCATGGGCTATCTGTCCATGGCCGTCAAAGGTCTTGGTTTCCTGGTG
CTTACTTGGACCACCGTCGTTCTTCTTGGCGGTTTCATTGACGACCTGCAAAACAATGATTTTTGGTGTCTTACATTCAT
CACCCTTGTGCAGACGGCTGGGTTAGTGCCTGCTTGTTACTT---CTGCCTACTTTTTCTTAATT-------CCTGTTTC
TGATTTGTTCATGGTATTCTGTAGCTCTGTAT-TTTTTTCGTAAAATATAATTTGTCTTGTCAAAACTTATCTTGTCCC-
--------------------------------------TATCTAACCTGGAGGTATATATGAACAACAGGATCTTCGATG
TGCTTCTGACTGAAAAGCTGAGCTATATTGGAGATGCATTTACTAGCATCGCGTATGTTGAATGCACCAGAAAGTCGGAC
AACATATGGCG------------------------------AACTGTTCTGTCCAGGGTTCATACTCTGGTCTTGGCCAT
TTTCTTGTGCCCTCTGGTGGCTGTCTACATGGGTGGGTTGGTAGTTTCGACCATGCTTTC-GGTGTGGCATCTGATACAA
CAAGATTACC------ATGCTGACGGAGTTAGAAACCTGAAGAAGGCGCTGCTTGTCTTGTATTCCCTTGTTCTGCTCCA
GGGTGTGACTTTCTGCTATAAGCTCATGAATAGTTGGGCAAAGGGGTCTATAGTGAATGCAGTAGTCCACGAAAGAGGCT
TTGATAAGGATTGTCGTGATGGGATATCGGATTACATACGTGAAACAATGATCGGATGTGAAAAGGACCCATCTTCCGTT
AAAGGAAGGAACCTCATCACATATGCTGTGGGCCTGATGGAGTCTAAGTCGCCTGACGACTACATTTCCGGGGTAAGGAT
CCTGGACGCTTTCGCCAAAAAACTGGAGGCAGCAGTGAAAGAGGTC---GAGG-GGGTAGACGATCCGCACCAATACACA
AGG--------------GAGAATATACTCAAGAAACATCTGATAATGTCTGCAGCCTCTCCCGATATAGTCCAGAAGCTG
CTGCAGACATTGGGCCGCATAAGCATATATGACAGAGAGACGAGGGGGCATGCCGCAAGGGTAGTGGCGAGCATTGCTCA
CGACATCCATTTGGGGAAATATCCAAAGGCAATTGGCTACATATCTTCCCTCCTTGACACATACGAAGAATACAGTATTC
TCCAACCATATAGGGCAGACTGGCTGTACGAGACATATGAACAAGATT-
>chr5B_1010
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-------------------------------------------------CGTGAGAAGCTTGTTGAGGACACTCGTTGGG
CAGAAGTAGAAATGGCCAACAGTTATGCCCTGTTCATGGGCTACCTGTCCATGGCCGTCAAAGGTCTTGGTTTCCTGGTG
CTTACTTGGACCACCGTCGTTCTTCTTGGCGGTTTCATTGACGACCTGCACAACAATGATTTTTGGTGCCTTACATTCAT
TACCCTTGTGCAGACGGCTGGGTTAGTGCTTGCTTCTTACTTCAGCTGCCTACTTTTTCTTAATAGTTAATACCTGTTTC
TGAATGGTTAATGGTATTTTGTTGCTCTGTATTTTTTTTCGTACAAAGTAATTTGTCTTGTCAAAACTTATCTTGTCCC-
--------------------------------------TATCTAACCTGGAGGTATATATGAACAACAGGATCTTCGATG
TTTTTCTGACTGAAAAACTGAGCTATATTGGAGATGCATTTGATGGCGTGGCATATGTTGGATACGCCGGAACATCGGAA
AACAAATGGCGCAT------------------------------TGTCCTATCAATGGTTCATACTCTGGTCTTTGTCAT
TTTGTTGTGCCCTCTGGTGGCTGTCTACATGGGTGGGTTGGTAGTTTCGGCCGTGCTTTC-GGTGTGGCGTCTGATACAA
CAAGATTACC------ATGCTGATGGAGTCAGAAACCTGAAGAAGGCGCTGGTTGTCTTGTATTCCCTTGTCCTGCTCCA
GGTTGTGATTTTCTGCTACAAGATCATCAATGGTTGGGCAAAGGGGTCTATAGTGAATGCAGTAGTCGACCAAAGAGGCT
TTGATAAGGATTTTCGTGATGGGATATCGGATTACATACGTGAAACAATGATGAGATGTGAAAAGGACCCATCATTGGTT
AAAGGAAGGAACCTCATCACATATGCTGTGGGCCTGATGGAGTCTAAGTCGCCTGACGACTACATTTCCGGGGTAAGGAT
CCTGGATGCATTCGCCAAAAAACTGGAGGCAGAAGTGAAAGGGGTCAATGGGG-AGGTACACTATCCGCACAAATACACA
GGG--------------GAGAATATACTCAAGAAACATCTGATCATGTCTGCACCCTCTCCCGACATACTCCAAAAGCTG
CTGCAGACGTTGGGCCGCATAAGCATATATGATAGAGAGACAAGGGGGCGTGCCGCAAGGGTGGTGGCGAGCATTGCTCA
CGACATCCATTTGGAGAAATATCCAAAGGCAATTGGCTACATATCTTCCCTCCTTGACACATTCGAAGAATACTGTATTT
TCCAACCATATACGGGAGACTGGCTATATGAAACATATGAACAAGATT-
>chr3A_1263
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-----------ATATATTTTTGAGTGATTATTTCTACTTATCTAACATGGAGGTACA----AGCAACAGGATCTTCAATG
TTCTTCTGACTCAAAAGCTGAGCTATATTGGGCAGTTTTTTTGGGCCGTTATGGATGTTGGATATACCGTGTTGACTGGC
AACGCTCTCCAGCTTAAATTCAGCAACTTGAAAGATGTTGCAATGGTTGTTGGCATAGTGGTTTGTTGT---------AT
TTTGTTGTGCCCTCTGGCGGCTGTCTATGTGTTTGGGTTGCTAATTTCGGCTGGGATTTCAAGTGTGGCGTCTGAGCCAA
CGGGACTACGGGGGCGAGGCTGATGGGCTTGGAAACCTGAAGCCTTCCTTGGATATCTTGTACTCCCTTGCTCTGCTCCA
GGGTGTAGTTTTCTACTACAGGGCCATCTTTGGTTTTCTCAAGGGAAATGTAGTGAATTCAATAATTGAACAGGGAGAAT
TTGGTGATCAGAGTCGCACTCCAGTTTCGGATTACTTCACTGAAACAGTGACCGGGTGTGAAAAGGATACATCATTCGCT
AGTGGAAGGAACCTCATCACATATGATGTGGACCTGATGGTGTCGAAGTCACCTGATGACTACCTTTCCAGGGTTAGGAT
CCTTGACGCCTTCGCCAGACGGCTTCGGACAGTGGCCCAAGAATGGGAAGAAGAAGGTACCCTATACATTCCAGACGCAA
TGAAGGAATCCATGCAGCGGCACATACTCATGAAGTATCTGATCGCGTCTGCATCCTCTGCTGACATACTCCAGAAACTG
CTGCAGACATCGGGCTGCAGAAGCATATATGACAGAGAGATGAGGGAGCATGTGGCGAGGATAGTGGCGAGCATTGCTGA
GGACAT--------------------GGGGAATCGGCTACATATCTTCCCTCATCGACACATTGGAAGAATACAGTATAC
TCCAACCATATCA------------------------------------
>chr1D_1290
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--------------------------------------TATCTAACTT-GAGGTACA----AACAACAGGATTTTCGATG
TTCTTCTGACTGAAAAGCTAAGCTATATTGGGGATTCAATTTCGGCCATTATATCTGTTCGATTGGCCCTGTTTGATGAT
CACCCTTTGCAGCGTAAACGCCAGGTGC---------TGGCAACTGTTGTAGCCACTGTTCAACAAGTAGTATTTGTCAT
TCTATTGTGCCCTCTGGCGACTGTCTACATGTTTGGGTTGTTAATCTCTGCGGGGATTTC-TGTGTGGCGTCTGAGGCAA
CATGATTACGGGAGTGATGCCGACGGACTTGGAAACCTGAAGCCGGCGCTCGACATCTTGTATTCCATTGCTCTACTCTA
GGGTGTGATTTTCTGTTACAAAACCTTATTTGGTTTTGCAAAGGGATCTGTAGTGAATGCAATACTCAAAAGAGAACATT
TTGGTAATCAGGTCCGTGTTGGAATATCGGACTACTTACTCCAAACCACGATGGGATGCGAAAAGGACCCATCGTTCGCT
AGAGGAAGGAACCTCATCACATATGCTGTGGACCTGATGGGGTCCAGGTCACCTGATGACTATGTTTCCGGGGTCAGGAT
CCTGCATGAATTCGCCAAACAAATGCAGATACTCGCCAAAGCATTT---GATGAAGATACCTTTTACGATCGGAAGACAT
TGAATACGTTCATGCAAGAGCACATACTCATTAAGCATCTGATCATGTCTGCATCCCCTACCGATTTAGTCAAGAAACTG
CTGCGGACGTTAGGCCTGAGAAGTTTGTATGACAGAGAGACGAGGGCGTGTGGCGCGAGGATTGTGGCCCACATTGCTGC
AAGCATTGAATTGGAAGTGTTCCCAACGGGAATTCTCTACATATCTTCTCTCATCGACTCATTCAAAACATACAGTTTAC
TCCAACCATACCAGCGAGACTG---------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S---------------------------S-SS-SSSS
SSSS---S-------------------------------S---------------S----S-------------------
--S-----------S--------S----------------------------------S-S-------------------
-----S---------------S---S-----S----------S-------------------------------------
SSSSSSSSSSS-------------------------------------SS--SS------------S-----------S-
-SS-------------------------S--------------------------------S--S-S-------------
--S---------------S----S-S-------SS---------------------------------------------
----------------------S-----------S--S--S---------------S---SS-----S--S---------
--------------------S--------S--S--SS-SSSSSSS-----S-SS--S--S--------------------
---------------S------S---------------------------------------------------------
-------------------------------------------------------------S----S--SSS-SS-S-SS
SSSSSSSSSSS------------------S--S--S---------------------------------------S----
-------S---------S-----------------------------------------------------S--------
-----------------------------S--------S-S-------------S-------S-----------------
------S-----------S----------------------------------------------------------S--
S-------S----------S------------------------S-----------------------------------
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---------------S----------------------------------------------------------------
--------------------------------------------S-----------------------------------
--------------------------------------S-----------------------------------------
------------------------------------------SS--------------------------S---------
-----------------------------------------------------------------SS----S-----S--
-------SS-S-------S---------------S---------------------S------S---------S--S---
---------------S--------------S------SS---------S
>forward_106
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------TTCTGCGTGCATTTGTGGTG------------------------------------------------------
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>reverse_1108
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-------------------------------------------------------------------GGGCTTCCTGGTG
CTTACTT-------------------------------------------------------------------------
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>forward_194
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--------------AGTAGGGGGCAACAAAGTCG----------------------------------------------
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>reverse_1689
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--------TGGGAGTGAGGATGATGGACT---------------------------------------------------
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