>input_sequence_86038
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--------------------------------------------------ATGGTGGCGATGAGCGTGGGCGCTGTGGAA
GCGCTCAAGGACCAGGCAGGGCTCTGCCGCTGGAACTATGCGCTGAGGTCCATTCACCGGAGCACCAAGGCCAAGGCCAA
TGTCCCCGGCGGTGCATCGCAAGTCAAGAAGCAGCTGCCTGCCTCCGCAGCAGCCGTGGCGGAGAGGCGGCGAGCGCGGA
AGGCCGAGGAGGGGCTGAGGACGGTCGTGTACCTCAGTTGCTGGGGCCTAAATTAG------------------------
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>chr2D_1_TraesCS2D01G533900
ATGCGACAACCCCATGACCGTTTGTAAATACAGCACGAT-----------------------------------------
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------------------------------------------------GATGATGATGATGAAAATTTCGGCTATGAATT
TATATTACCCTCCTTGTGCATGTTCTTCCATGACTATTTTTTGAAAGGCCAAAAGTTGACGTTTGTGAAGAGAGGAACTC
T----------------ACAAAACGAGGCATACAGAAT-------ACAGAGG----------------------------
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------AAATTCAGCTTCCTGTACCGAACAGCCAAACTCTGAATAAAGGCCGGGTAGAACAGG-------------GGTG
GTTGATCTCAGCGATACACCCGGCTGCCCTCCAAGATTTCACATCTTCTTTG---ATCAAATTCGAACACCTCCGGATCG
CTGCAAGAGGTGGCCGTCAGAGATTATTGCTTTGTGTACTTTGATGGA--------GTCGACCTGCTGGATGTGCTTCTT
GTGGCTCGAGGCGAACCTGTTCTGAATTTCTTTGCTCTGCAGTCTGCTCAAGGCACACGATATCTAATTAACTAAACGTG
TTTTCTCTCATCAGAGTGAGACACACATAGTCCTCTTTTTAGTTAGAAGCGCGCCGTGTAAAATATGCGCACGAATGCTT
TTGGATGAGCAGACGGTCATGGTGTCAGGACCCGGAAGGGCAGACACTGCACAGCACCGGGACGACAGCGAGAGATGCGG
AGCAAAGTGAGCTCTGCTGAAAGCACCAGGTATCCTAGAAAACCAGCGCCCGCAGCCGCCTGTTTTGCTCCGGCTATCAC
GTATATAACCCCGTCCCACTCCCACTTTTTACCAACAATTCAAACGAACATCAATTCAGTGAGATAGTTCAAGAAAATCA
GCTCTGTTCTTTCAACACCGCAACTTTGCAAGTCCACTAGTACTAGACACAGCAATCACAAATCAGTTTCCACTCTCTCT
TTTGGTTATATTTCCGTTATGTCGCAGTAATGGAAAGGGGTAATGCCCGGTTAAAAAAAAAGTTTCCACTCTCTAGCAAC
GCGGCAAGAACAAGAAGGCGGCGATGGCTGGTCCGGCGAAGGCGTCCTAGATGGTGGCGATGAGCGTGGGCGCTGTGGAA
GCGCTCAAGGACCAGGCAGGGCTCTGCCGCTGGAACTATGCGCTGAGGTCCATTCACCGGAGCACCAAGGCCAAGGCCAA
TGTCCCCGGCGGTGCATCGCAAGTCAAGAAGCAGCTGCCTGCCTCCGCAGCAGCCGTGGCGGAGAGGCGGCGAGCGCGGA
AGGCCGAGGAGGGGCTGAGGACGGTCGTGTACCTCAGTTGCTGGGGCCTAAATTAGGAGCACTGGTAGCTAGGGAAGCAT
GCAGCCATGGCCCGCGACTTGGCTGGCTGCCCCCTGATCGATTGTAAAGATACCATGACGACGACGACGACGATGATGAT
GATGAAAAAATTGGCTAAGAGTTTATAATTTATATCGCCCTACTTGCCCATCCATGTGCTTGAGTGACTTCTTTGAAAGG
CCAAAGAATGATCTGTATCAAGAGAGGGAAAAAGTTCATAGGTACACAGAACACAGGGAGAGTAACTCAACAAAGCGAGC
CGTTCTACACAAAACAGAGCAGCTTCATATGCAGACAAACTGTCAACAAAGGGTAGAACAGTGAAAAAACGAAAAGGAGT
TCGATCTCAGCGATACACCCGGCCTCCCTCCAAGATCTCAGATCTTGTCTGATCCATTCGCACACCTCAAGTTCGCTGCA
ATGGATGCCGTTAGAGATTCTGACGCTG-GTTCCTTACAACATATTATCCTCTGATGATTATTTTGGCGTTGTATGCTCT
GCATTAGTTGCAAGTACTTTCTGTTTCTCGGAGTTGACCTGGAGATCGTTCATGGCGAACGTGCTCTGAATTTCATCACT
CTGCACTCTGCTGTAGGTGCAGACGATGGCATGTTAAACTAAATGTGATCAGAGGGATGGCGCTAATAAGTTAACTAAAT
ATGTTTTTTTTTTCTCATCAGAGTGGTGAAAGAGTGAGACACGGAGCAGTCCCCTTTCCAGTTGTAGGTGCACCGAGTAG
ATTATGCGCATGATACGTTTGCATGAGCAAATGCTGACACAAATTGGTAGACGGCCACCACCGGCCGCTGGTACGGTGGA
AACCGTGGCCTCCGACGTCTTGTTTTCACAGCCCGTCCGCGTCTCCCGTACCTTCGCCCTTGCCGTCAACCCAACAGCCA
AAAGAGCATGTGGCCAAAAGTTGTAGTTAACCCACGTGTGAGCAGAGCAAACCGCGTCACAAAAAGGAGGATTGTTAGTT
TAAGATTCACTTGCTGA
>chr2B_35
GCGAACATGTTCTGAATTTCTTTACTCTGCACTCTCCTCAAGGGACACGATATCTAATCTAATTAACTAAATGTGTTTTC
TCTGATCAGAGTGAGACACACATAGTCCTCTTTCTAGTTGCAGGCGCGCCGTGTAGAATATGCGTGCGATGCTTTTGCAT
TGATGGTAGGAAGAGTTGTCTTATTAATACTGTCTAATTAAAGCGAGCCTGATCAGAGTGATGATGTTAATAAGACAGTA
TTAATAAGTTAATTAAACGTGTTTTTTTTCTCTGATCAGAGTGGGACACACAGGGTCCTCTTTCCACTTGTAGGCAAGCC
GGGTAGAATATTTGCACGATGCTCATATTCAGAATTTGAAACATTGAGGGTACCCTGTTCGCTACAACGGTGACTATCAG
AGATTAGAGATTATGGCGTCGTGTTCCTATCCAACTGGGCATGCAAATTTGAAACCTTGAGGGTACCCTCCGACCCTCTT
TAGTTTAACTAAATGAATTTTTTTTCAGAATTCATTCATTTTTGAAACTTTAGTTCATTTGGTTGAACTAAGTAGGGTCG
GTGCAGACCCGCAACAAATTCTTCTCTGGTTGTTTTAATGGGGAACAATATGTATATGCTTTTCAATAGTTGCAAGTACT
TTGGGCGAATGGACCTGACTCACAAGTGGAGGGCTCAAGGGATATGGACGACACTGAGGCTAGTCGCCACTAAAGCAGAG
TCATTCCTTCTATAAGATTGTGCTTTTTGATCGGAGTGAGCATGATAACATAGTGAAGGACATCACAACCCTTTTCAGTT
TCTATACTGAATGACCATCTATTTCCATGGAAGCAAAAGAAAAATTAACTTTCTAACGAGTACTTACGAGCACACACACA
AGTTCCTTTCAAGCCATTAAGCAGACCGATGATATCATAATTATTACTGTTCACATAAACAATTGTGCTGCAGAAATCGA
CTTAGATATTTGCTAGGCATCTATATTATAAAATTCTTATCAAGATATTTGAAGATACTACTAAACCAAACACATAACAC
AAATATGCATCTAAGTAGCACACAAATTAATCTATATATAAATAAGATATAGGATCTGTAGCCAGTAGCAGGCCCAATTT
AGCTCACTCAATCACTCTGAACAATAGGAACCAGATTAATAATTTTGTATCCGCAACCACACCCAAAAAGAAAGAAAAGC
TTCAATTCGCATCTGCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTCT
CCAAAGCTGGGGGAGGGGGGGGGCACCGCCCCCCTCGGCCTCAACATAGCTCCGCCACTGCTCTCTTGTATATTTTTTTT
GTATGCATTATGGTGAGGGGTATCGACGTCGTCCCCGGTCCCTCTTCCCAGCCGGCGGGAGGAGCGATCGAGCACCCACC
GCCGATGTAGGGTGCGGATGCAGAGAGGATCGCATTGCTGAAGACCATGAACTACACAACACCGAACCTGGAGCAGGGAT
AGGCTGACAGGCGTGATTGTGAGATCTGCTTGGAGGACTTCGTCGAGGGCGAGTGTCGGTGTCAAAACCGGCGGATCTCG
GGTAGGGGGTCCCGAACTGCGCGTCTAGGCGGATGGTAACAGGAGACAAGGGACACGATGTTTTATTGTATGAGATGATC
ATGTTTTGTAACCGAAGTTATCGGCAACTGGCAGGAGCCATATGGTTGTCGCTTTATTGTATGAAATGCAAACGCCCTGT
AATTGCTTTACTTTATCACTAAGCGGTAGCGATAGTCGTAGAAGCAATAGATGGCGTAACAACAACGATGCTACGATGGA
GATCAAGGTGTCGCCCCGGTGACGATGGTGATCACGACGGTGCTTTGGAGATGGAGATCACAAGCACAAGATGATGATGG
CCATATCATATCACTTATATTGATTGAATATGATGTTTATCTTTTATACATCTTATTTTGCTTAGTTCGACGGTAGCTTT
ATAAGATGATCTCTCACTAAATTATTAAGAAGTGTTCTCCCTGACGATGATGATGATGATGAAAGTTTTGGCTATGAGTT
TACATCACCCTCCTTGTCCATGTGCTTCCATGACTATTTTTTGAAAGGCCAAAGGTTGATGTTTCTCAAGAGAGGAACAA
TGTTCAGAGCTACGAGAGCAAAACGAGGCATA----------------GAGG----------------------------
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------AACTTCCGCTGCCTCTACCGAACTACCAAACTCTGAAGAAAGGA----TAGAACAGG-------------GGAG
TTGGATCTCAGCGATACACCCGGCTGCCCTCCAAGATTTCATA---TCTTTG---ATCAAATTCGAACAACTCCAGGCCG
CTGCAAGCGGTGGACGTTAGAGATTATAGCTTTGTGTGCTTTGATGGAGTCA-------GACCTGCTGGATGTGCTACTT
GTGGCTGAGTCGA-------------------------------------------------------------------
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>chr2A_40
CAGCCGTCTGTTTTGCTCCGGCCCTCCCGTATATAACCGCGTCTCACTCCCAATCTTCTTCCCATCAACACAAAACAAGC
ATCAATTCAGTGAGACAGTTCAAGAAAATCAGCTCTGTTCTTTCAGTACCGCAACTTCGCAAGTCCACTACCACAAGGAT
CACAATTCGGTATCCTCAAGAGCAGAGCAGCAAGAACAACGAGGAAGAGAGATGGCTGCGCCGGCGAAGGCGTCGTGGAT
GGTGGTCATGAGGGTGGGCGCGGTGGAGGCGCTCAAGGACCAAGCTGGGCTCTGCCGATGATAATGATG-----------
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--------------------------------------------------------------AAAATTCGGCTATGAGTT
TATATCACCCTCCTTGTCCATGTGCTTCCATGGCTATTTTTTGGGAGGCCGAAGGTTGATGTTTTTCAAGAGAGGAACTC
T----------------GCAAAACGAGGCATACAGAAAAGAGAAAACAGAGG----------------------------
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------AACTTCAGCTGCCTGTACCGAACAGCCAAACTCTGAAGAGAGGA----AAGAACAGG-------------GGAG
TTGGATCTCAGCGATACACCCGGCTACCCTCCAAGATTTTACA---TCTTCTTTCATCAAATTCGAACACCTCCAGGTCG
CTGCAAGCGGTGGCCGTTAGAGATTATAGCTTTGTGTACTTTGATGGAGACATGGAGTCGACCTGCTGGATGTGCTTCT-
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>chr2A_154
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------------------CAAAATGAGGCATAAAGAAA-------ACAGAGCTCAGCTGCCTGTACCGAACAACCAAACT
CTGAAGAAAGGGTAGAAGAGAACAGAGGAGTTGGATCTCAGCGATACACCCGGCTGCCCTCCAAGATTTCACATCTTCTT
TGGTCAAATTCGAACACCTCCAGGTCGCTGCAAGCGGTGGCCGTTAGAGATTATAGCTTTGTGTACTTTGATGGAGTCGA
CCTGCTGCATGTGACGAGATTGTGGCGAACATGTTCTGAATTTCTTTGCTCTGCAGTCTGCTCAAGGGACACGAGATCTA
ATTAAAGTGAGCCTGATCAGAGTGATGACATTAATAAGACAGTATTAATAAGTTAACTATAAACATGTTGTCGTTTTCTC
TGTTCACAGTGAGACAGACACTCCTCTTCCCAGTTGCAGACGCGCCGTGTAGAATATGCGCACGATCATGGTGTCATGGA
GAGGATGCATCCTGACCAGTTACTAATTTGACGATTTTCTGAATGATTTTGGGAAGAGGATGGATACAAGTTGAAGAAAA
TACCTTACTGCTACGCTATTCTAAGAGATACTTCTACTAGATTTAGGAAATTTTTCTTCTTATTCATGCTCTTTTTTTTT
GCGCATATTCTTCTTATTCATTCTACACAGAGAAGGGCATATATATAGCCGGATAGCTCAGCGATTATAGAAGTAAACCA
TATATGAGCTCAATACTAATAGCACTAATAGCCGTTGGATCTCTCCATCAAATGCGCACCATTGGATAACTGAATGTGTC
GGCTCACTTCTTTATCTCTGAAGGATAACTGAACCAGTCGTGTTGAGATTCTCTCCTTGCTAGGGCCTGAGCCTGACACA
TGGCCGGCCGGCCTCATACGAGTCTCCCCGATAGCATGTGTTCCCAAAAATGTTATAGTTAACCTACGTGAGTACGAGTA
ATCAAGCAGATCGATGTATGGCGGATTATTAACCTCCTCGCGGTGTTTAGGCCCCTGGTATCGTGGAAACCATTTCCTCG
AGGCTCCAGCATGCGACAATTCAACAAAATTAGCTCTGTTCAGACGAGCATCAATTCAGTGAGACAGTTCAACAAAATTA
GCTCTGTTCTTTCATCACCGCAACTTTGCAAGTCCACCGGTACTAGACACAGCAATCACAAATCAGTTTCCACTCTCTAG
CAACGCGGCAAGAACAAGGAGAGGCGATGGCTGGTCCGGCCAAGGCGTCGTGGATGGTGGCCATGAGCGTGGGCGCGGTG
GAGGCCCTCAAGGACCAGGCTGGCCTCTGCCGCTGGAACTATGCGCTCAGGTCCATCCACCGAACAGCCAAGGCCAAAGC
CAGTGTCCGCGGCGGCGTCTCGCATGGCAAGAAGCAGCTTCCAACCTCTGCGGCCGCCGTGGCGGGGAGGTGGCAAGCAG
AGAAGTCTGAAGAGGGGCTGAGGACGGTCATGTACCTCAGTTGCTGGGGGCCAAATTAGTAGCACTGATAGCTAGGGAAG
CATGCAGCCATGGCCCGCGACCCTGATCGATTGTAAAGATACCACGACGACGACGATGATGATGATGATGAAAATTTCCG
CTACGAGTTTAGAATTTATATCACCCTACTTGTCCGTTCATGTGCTTCAGTGACCTTTTTGAAAGGCCAAAGGACGATCT
GTATCAAGAGTGGGAGAAAGTTCAGAGTTACACATAACACATGGAGAGTAACTCAGCAAAGCGAGCCTTTCTACAGAAAA
TAGAGCACCTTTATATGCCTCTACAAAGCAGCCAAACTCTGAACAAAGGG----CAGAACAGTGAAAAACAGAAAAGGAG
TTCGACCTCAGCGATACACCCGGCCGCCCTCCAAGAT-------------------------------------------
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------------------------------------CTCAGATCTTGTCTGATCGATTCGAACACCTCAAGTTCGCTGCA
ATGGAAGCCGTTACAGATTCTGACGTTATGTTTCTTGCAACATA------------------------------------
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>SNPs
SS--SSSSSSS-SSSSS------S-SSSSSSSS---SSS-----------------------------------------
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-----------------------------------------------------------------------------S--
-----S-----------S-----S-----------------------------S-----S----S-S-------------
-----------------S-------------------S------------------------------------------
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--------S-------S--------------------------S-----SSSSS------------------------S-
S-S----------------------------------------SSS----------------------------S-S---
-------S---------S---------S----------------------------------------------------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S-----S-------------------
-----S-------S-----------S-S----S---S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_4711
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---------------------------------------------------CGCCGTGTAAAATATGCGCA---------
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>reverse_5670
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---------------------------------------------------------------------ACAAAGCGAGC
CGTTCTACA-----------------------------------------------------------------------
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