>input_sequence_86031
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------------------------------------------------ATGGGCTGCGACGACAAGTGCGGGTGCGCCGT
GCCGTGCCCCGGCGGCACGGGCTGCAGGTGCACCTCGGCGAGGAGCGGCGCGGCGGCGGGGGAGCACACGACGTGCGGGT
GCGGCGAGCACTGTGGATGCAACCCGTGCGCGTGCGGGCGCGAGGGGACGCCGTCCGGGCGGGCGAACAGGAGGGCCAAC
TGCTCCTGCGGCGCGGCCTGCAACTGCGCTTCATGCGGCTCGGCGACCGCCTGA--------------------------
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>chr1D_1_TraesCS1D01G206300
TGCTTACCATGCCACCTTTAGCAACAGCGATGATGGGAGCGGTACTCGAATATATCATGTTGATAACGAGCTCTTCGGCA
CTGCAAGGTGTGTTTGGGGATCCTGCTACAACATGCATGATAACAAGATGGAGTGCATATACGAGCCACCGGAGGATGAC
TACAACGATTATTATTCAACTAAGCCTAGTTGGTTTGTGCCCTAGTTAGTTTTTTTCCTACCTAGCCGGGTTCGTCGGTT
TCTTATACTGGGAAGAGAGATGCTTTAATCTCGACATAATATATTGATGTTTACAGACAAAAAGTCAAAGTTGTACGAAC
CTAGTTGGTTTGTGGCCCAGTCTGTTATTTCCCTGATATTTTTTAAAAATTTCGTTGTTCATGAGGGTGTATCTTTTGAG
CTCACGAATTGAGCTCTTCTTCCTTATCGTCCGTGGTAC-CAGCTCCAACGATTACGACGAGGGTCCAGGTTTTCATAAC
CACTGCTCCATCCATCTACCGGATATATATGCCGAGTTTTGCTAGACATACGGAAGCTTACTTAAGTTTACAGGCTGATC
TCTGATTTGGCATATTTTAATTGGATGATGGGGATGTGAGGGGCCCCACACGGGTGAAAATCAGGGGGGCTTGACCGCTT
GAGAGATTTTATGGAAGGGTTTGTAGCAGTCCCGTAAAAGGCCGTACGTGTAGCATTTTTGTATATATGCCCGTGGCTTG
GCCGTTTTCATAGGTATTG---TACACGTCTCCGGCCGTGGCGGACGTACGTAGGTGCCACTGCCACCGCATCATCCCTA
GTTCCTGCCGTGTAACCCACGTGTCCTCGCCCACTGCCACACGCCGGCAGCTCCGACGTCCGAAAGACATGCCGCCGCTT
AAGCCCACTCTTCATATAGTCGCGCAGCGCACCCCCTACAGCCCCGTGCTCTGGCATACATACAGTGTGGTCATAGTGGT
GAACTGAGAAGAGCTACTG----CGAACAAGGCACGCCGGAGATCGAGATGGGCTGCGACGACAAGTGCGGGTGCGCCGT
GCCGTGCCCCGGCGGCACGGGCTGCAGGTGCACCTCGGCGAGGAGCGGCGCGGCGGCGGGGGAGCACACGACGTGCGGGT
GCGGCGAGCACTGTGGATGCAACCCGTGCGCGTGCGGGCGCGAGGGGACGCCGTCCGGGCGGGCGAACAGGAGGGCCAAC
TGCTCCTGCGGCGCGGCCTGCAACTGCGCTTCATGCGGCTCGGCGACCGCCTGATCGATGGCCGACGCGTCGACGCGCCA
CTAGTCGTGAGCTGATGCACAAGTAGTAGAGCTAGCTACCGAGTTAGCCATAAATAAGTGCCGCTGTGCCGTGATCAGTC
ATATGTGGACGTGTCGTGTGTATTTACCTACGTACTCGCATCAGTGTGTAAGAACGAATAAATAGTTTATGTGTGCTATT
TTCTCCTTTCCTAAATGTACTTGAAGTCTTTTGGCTTGTTACAAGTTTTACTTGTTGCAAAATAATTATAGTTCTACGAT
TTTCTTAAGAAAAATGACCATGTCTAAAGAAAAATCTATTGAGGTCTACAATATAAA--ATATATATAATATGAAAATAT
ATT-CTCACAGTAAATTTGATGTTATAGATGTCTATATATTTTTATATAGACTTAATAGAAAATGCAAGAATAAAAGATT
CCATTGCTTAACCATTGTGGTTAGACTACAGCGAATGAGGGACCCGGATCTAAGCCACACCGTAGTGCGCTTGTTGTGAT
ACCCAAGCTGAGCAGGACCATAAGCCAAGCTGAGCAGGACCATAAGCCACACAAGACCATAAACCACATCATTGTTGTGA
TAACCAAGCTGAGGAAAACCATGAGCCACCTCTCTTTGTCG-------------GCGACCCATGAATTCGTCTTCTCTCT
GTTGCTCCGGCGAGGAGAA-GAACCCGGTTGCCTGGTTTAGGTTATGAGTTTTTAGTTTA------------------CG
GACGGCGGCGCTTCTTATTCGAGTTTGTATTTCGACCTCTGATCTTTCTCGAGTTCGTTCATGGATGTACTTAACGGAGG
CCCGGCGTAGATTCGTGTAGTCTTCTTGGAGCGGTGAGATTTGGGTTTCTTGTTATGTGACAAGATTTGGTATCGGATAC
TTTAAATCTGTTTAAGGGTTCAACAATTGCGGCTTCAAGATATTGGTCCTTAGGGGCACGTACACGAAGACCTCCCAGCT
GTCATCAACAAGATCAAACCGGCTCCGATAGTGGCGGCAGTGGCATGTC
>chr1B_390
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---------------------------------------------------------------------TATCTTTTGAG
CTCACGAATTGAGCTCTTCTTCCTTATCGTCCGTGGTACTCAGCTCCAACGATTACGATGAGGGTCCGGGTTTTCATAAC
CACTGCTCCATCCATCTACCGGATATAT----------------------------------------------------
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------------------------------------------------------------------ATGCCCGTGGCTTG
GCCGTTTTCATAGGTATTTGTATACACGTCTCC----------GACGTACGTAGGTGCCACTGCCACCGCACCATCCCTA
GTTCCTGCCGTGTACCCCACGTGTCCCCGCCCACTGCCACACGCCGGCAGCTCCGACGTTCGAAAGACATGCCGCCGCTT
AAGCCCACTCTTCATATAGTCGCGCAGCGCACCCCCTACAGCCCCGTGCTCTGGCATACA----GTGTGGCCATAGTGGT
GAACTGAGAAGAGCTACGAGCATCGAGCAAGGCACGCCGGAGATCGAGATGGGCTGCGACGACAAGTGCGGGTGCGCCGT
GCCGTGCCCCGGCGGCACGGGCTGCAGGTGCACCTCGGCGAGGAGCGGCGCGGCGGCGGGGGAGCACACGACGTGCGGGT
GCGGCGAGCACTGTGGGTGCAACCCGTGCGCGTGCGGGCGCGAGGGGACGCCGTCCGGGCGGGCGAACAGGAGGGCCAAC
TGCTCCTGCGGCGCGGCCTGCAACTGCGCTTCATGCGGCTCGGCGACCGCCTGATCGGTGGCCGACGCGTCGACGCGCCA
CTAGTCGTGAACTGATGCACTAGTAGTAGAGCTAGCTACTGAGTTAGCCATAAATAAGTGCCGCTGAGCCGTCATGAGTC
ATATGTGGACGTGTCGTGTGTATTTACCTACCTACTCGCATCAGTGTGTAAGAACGAATAAATAGTTTATGTGTGCTATT
TTCTCCTTTCCTAAATGTACTTGAAGTCCTTTGGCTTGTTACAAGTTTTACTTGTTGCAAAATAATTGTAGTTCTACGAT
TTTCTTAAGAAAAATGGCCAAGTCTAAAGAAAAATCTATTGAGCTCTACAATATAAA--ATATATATAATATGAAAATAT
ATTTCTCACAGTAAATTTGATGTTACAGATGTCTATATATTTTTATATAGACTTAATAGAAAATGGACCCGATCTAAGCC
-----------------------------------------ACCC-GATCTAAGCCACGCCGTAGTGCGCTTGTTGTGAT
ACCCAA----------------------GCTGAGCGGGGCCATACGCCACACAAGACCATAA-CCACATCATTGTTGTGA
TAGCCAAGCTGAGGAAGACCATGAGCCACCTTTCTTTGTCGTCACTCTTTGTCGGCGACCCATGAATTCGTCTTTCCTCT
GTTGCTCCGGCGAGGAGAGGGAACCCGGTTGCCTGGTTTAGGTTATGAGTTTTTAGTTTCATAGATGCAACATTCAGGCG
GATGGCGATGCTTTTTATTCGAGTTTGTGTTTCGAGCTTTCATGTTTCTCGAGTTTGTTCATGGG---------------
------------------------------GCGGTGAGATTTGGGTTTCTTGTTATGTGACAAGGTTTGATGTCAGATAC
TTTAGATTTGTTTAAGGATTCAACAACCGCGACTTCAGGATACTGGTTTTTAGGGGCACGTACATGAAGACCTCCCAGCT
GTCATCAACAAGATCACACC-----------------------------
>chr1A_475
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---------------------------------------------------------------------------ATAAC
CACTGCTCCATCCATCTACCGGATATAT----------------------------------------------------
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------------------------------------------------------------------ATGCCCGTGGCTTG
GCCGTTTTCGTAGGTATTG---TACACGTCTCCGGCCGTGGCGAACGTACGTAGGTGCCACTGCCACCACATCATCCCTA
GTTCCTGCCGTGTACCCCACGTGTCCTTGTCCACTGCCACACGCCGGCAGCTCCGACGTCCGAAAGACATGCCACCGCTT
AAGCCCACTCTTCATATAGTCGCGCAGCGCACCCCCTACAGCTCCGTGCTCTGGCATACA----GTGTGGCCATAGTGGT
GAACTGACAAGAGCTACTG----CGAGCAAGGCACGCCGGAGATCCAGATGGGCTGCAACGACAAGTGCGGGTGCGCCGT
GCCGTGCCCCGGCGGCACGGGCTGCAGGTGCACCTCGGCGAGGAGCGACGCGGCGGCGGGGGAGCACACGACGTGCGGGT
GCGGCGAGCACTGTGGGTGCAACCCGTGCGCGTGCGGGCGCGAGGGGACGCCGTCCGGGCGGGCGAACAGGAGGGCCAAC
TGCTCCTGCGGCGCGGCCTGCAACTGCGCTTCGTGCGGCTCGACGACCGCCTGATCGATGGCCGACGCGTCGACGCGCCA
CTAGTCGTGAACTAATGCACTAGTAGTAGAGCTAGCTACTGAGTTAGCCATAAATAAGTGCCGCTGAGCCGTGATGAGTC
ATATGTGGGCGCGTCGTGTGTAT-TACCTACCCACTCGCATCAGTGTGTAAGAACGAATAAATAGTTTCTGTGAGTTATT
TTCTTCGTTCCTAAACGTACTTGAAGTCTTTTGGCTTGTTACAAGTTTTACTTGTTGCAAAATATTTGTACTTCTTCGAT
TTTCTTAAGAAAAATGACCAAGTCTAAACAAAAATCTATTGAGATCTACAATATAAAATATATATATAATATGAAAATAT
ATT-CTCATAATAAATTTGAGGTTATAGATGTC--TATATTTTTATATAGACTTAATAGAAAATGCAAGAATAAAAGATT
TCATTGCTTAACCATTGTGGTTGGACTACAGCGAATGAGGGACCC-GATCTAAGCCACATCGGAGTGCGCTTGTTGTGAT
ACCCAA----------------------ACTGAGCAGGACCGTAAGCCACACAAGACCATAAACCACATCATTGTTGTGA
TAACCAAGCTGAGGAAGACCATGAGCCACCTCTCTTTGTCG-------------GCGACCCATGAATTCGTCTTTCCTCT
GTTGCTCCAGCGAGGAGA-GGAACCCGGTTGCCTGGTTTAGGTTATGAGTTTTTCGTT----------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
----------------------------------------------------------S--------S------------
----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
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--------------S-----------------------------------------------------------------
------------------------------------------------------------SSSS------S---------
--------------------------S-----------------------------------------------------
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----------------S---------------------------------------------------------------
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----------S---------S------------------S--------------------------S--------S----
-------------------------------S------------------------------------------------
-------------------------------------------------------------------S------------
--------------------S----------------------S------------------------------------
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S---------------------S----------------------S----------------------------------
------SSSSSSSSSSSSSSSSSSSSSS----------------------------------------------------
----------------S---------------------------------------------------------SS----
------------------S----------------------------------------S--------------------
--S----SS----S--------------S------S--S-S--S-----------S--------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------S----S-S--S-----
----S--S---------S--------SS---S-----S----S----SS---------------S---------------
----------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_151
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---------------------------------------------------AGTGCATATACGAGCCACCG---------
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>reverse_1781
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--------------------TAAGCCAAGCTGAGCAGGAC----------------------------------------
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