>input_sequence_86011
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------------------------------------------------------------------------ATGAAGCT
AGTGATGTGCTTGTGCGTCTTCATCATTCTCGTCATCGCCTCGTCGCCCATCCCGGTCTCCGGCGACCGTCCGCTGATGC
TGGGCCGGCGGTGGCTGCAGGACGCCGTGGTCATCGGCGGCAGCCCGACCACGACAGCGGCGAGCACCACAGGGACGTTG
CCGCGTGACGCGGAGCCGGACATATCGGTTGATAGGTCGAAGAGGCTCAGCCCCGGGGGATCTAACCCCCAGCATCACTG
A-------------------------------------------------------------------------------
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>chr7B_1_TraesCS7B01G234800
AATCCTCTGATCAGTAGAAAGGACAGGCACACTTCATGAACCTCCATCCTAGAAATACCAGCTCTATACATGGGGTACGC
GCGCACGCACTCACTATCCCTACGAGCATATCTGAGAAAATGGGCCGGCAGATCATGAGAATCTACTAGAGATGCACTTA
TTAGTTACCCTTCGTATGTGTC-CCTCTAGGTCTTCACTTCC-----TTGCCTTGTCCTTCTCTA------TATTAAGCA
GGAGGATATATAAGAGGAACTAATGCCTAGTGTAAATGTGTCGACACTTGAAACGCATGGATGATGACATACGCGAAACC
CAATCGGTCAACACGTCGAAATGCCATGTGAGTCTGATAACACGCAGACGTAGATTAAGGTTTGCAATGCGCGATGACTT
GAAAAAGGATGTCGCTGAC--TGTATTATATCGGATGAAATGAAAGGAACATGCATGTGGAATAGGGTGGATTCCTGGAT
GTGTATATCCTTGTCTCCTTGATCATGTGTTGAGTTGACTTATACCGCATCAAGTAT----TAAGTTCCAATGACGATAA
ACTCCATCGTGAAGTCAACATCT------AAAACATGATAAATGCGAATACATAATATCATATCATGCCAAAATACCCAG
AAGCACACTTCAAAGGAAAGATGGATACATACGTAAGGTAACGGATGAGATGGAGCCATGGATGGTGAGTGTGAGAGGAC
GTACGTGTTGGAAAACCCTAAGTTTA-----AACTACCTAACTGGTGCCGAAAGCTCACGTACGTTGGCTAGACGCATAT
ATTTTTGCAATGTCTCTAAACAAATGACTGGCCAAATCAGTGGCAGCTGATCCCACTATATGCATACACAATTCAGTGTC
GGCAGAA--AAAACTCGCACGCTTGGCTTATAAATGCACGTACAAGCTGTAGGGTGCAGCTCATCATCACTGCAGATTAC
ACAGTATCAAGCAGCTCGACCGCTCCTCGCAGCG-AGCTAAGTGAGCAAAGCTAGACAGACCTGTATTAGCCATGAAGCT
AGTGATGTGCTTGTGCGTCTTCATCATTCTCGTCATCGCCTCGTCGCCCATCCCGGTCTCCGGCGACCGTCCGCTGATGC
TGGGCCGGCGGTGGCTGCAGGACGCCGTGGTCATCGGCGGCAGCCCGACCACGACAGCGGCGAGCACCACAGGGACGTTG
CCGCGTGACGCGGAGCCGGACATATCGGTTGATAGGTCGAAGAGGCTCAGCCCCGGGGGATCTAACCCCCAGCATCACTG
ATCTCATCATCGAGATCAG----CTGCATGCATGCCTATCTTATGCTGTCATTTGTCAACATTTCTCTACTCGACCTCCC
AAACTAGATTCCTAACAACGGTGAATGCTGGTCTGGAGATTAGT--TCTCTTTCTCTCTCCCTATTTTTGTTTCCTAATA
AATTGATGTCCTGCGTGTGTGCGGAGTGTCTTAACCACTATACACCTACGCGATGTGATCAATTTTTCTCCAATGTGAAA
GTGGATTTGAGTTTAAGTCCCTGGTCAATGATGCAAGTTTTTCGGCTGCAAATTTCTTA--TATGTATTGTCGCGCTCTT
TATCTTGTAAACGACACACATACCATAATGAGTGAGTGTATTAAAAAGACAAGAGAAGAGTTCCCTTGAATTTATCTTCA
ATTCTACATGTCTTGATTTCCTAATTTAGGCTTCGTTATTATTTACTCCCTCCGTTCCATAATATAAGAAAGTTTTTAAC
ACTACACTATGTAAATAACGTTCTTATATTATGGGACAGAGGGAGTATTTGCAATCTCATTCAGGTATGATCTTAGCGAG
ACTTTCTTCGTTCTAAAATACATGGCATTTTATAGCATTCAACATGC-AACATAATTTGACAATTACATTTCAAAAGATT
ACGTTG---------------------------------------------------------------CAAAAAAGACT
ACAAAAGTTACATCATGAAGCACTTTTCATGAAAAATATAC-----------------------TAATAATAGGTGTTAG
TTTTGTTTAACCAGTATCAACTAACTTTTAGATATTATTTGTCAAGTTGGAGAAGCATGTCTGCACGCTTTCTGTGCTGT
CATCTAATTTGACAGTATATAACAAGGAAGTCGAAATGGATATTGGACCACTAAAGATGCATATCTTAATGAAGTCAAAG
TAGTATATTGTGTTAACGAAAAAGGACCGTT----------------------------------GAATTAATTTAAGGT
ATGATAAAGGAAAGGAGGCCGTGCTTCAAAAAAAAAAAGGAGCTGAAGGCCAAAATGCAACCACACATACACTAATTAAA
AAACATGTTG
>chr7A_14
-------------GTAGAAAGGACATGCACATTCCATGAACCTCGGACCTACAAATTCCAGATCTATACATGGAGTACGT
GCACACGCACTTCCTACCCCTATGAGCACATCCGAGAGACTGGCCTCGTAGATCATGAGGATCTGCTAAAGATGCACTTA
---GTTGCCCCTTGTGTGTGTTTCCTCTAGGTCTTCACTTCACTTCTCTGCCTTGTCCTTCACTA------TATTAAGTA
GGAGGACATATAAGAGGCACTAATGGCAAGTGTAAAGGTGCCGACACTTGAAACACATGGATGATGATGTACGCGGAACC
CAATCGGTCAACAC-TCGAAATGCCATGTGAGTCTGATAACACGCAGAAGTAGATTAAGGTTTGCAATGCGCGATGACTT
GAAAA-GGATGTTGCTGACTGTGTATTGTATCGGATGAAATGAAATGAACATGCATGTGGATTAGGCTGCATGCGTGGAT
GTGTATA--------TCCTTGATCATGTGTTGAGTTGACTTATGCCGCATCAATTTT----TAAGTTCCAACGACGACAA
ACTCCATCGTGAAGTCAACATCT------AAAACATGATAAATGCAAACTC-----------------------ACCAAG
AAACACACTTCAAAGGAAAGATGGATACGTACGTAAGGTAAAGCATGAGATGGAGCCATGGATGGTGAGAGG--------
--ACGTGTTGGAAAACTCTAGGTTTAAAATTAACTACCTAACTGGTGCCG-AAGCTCACGTACGTCGGCTAGATGCATAT
ATTTTTGCAATGTCTCTAAACAAATAACTGGCCAAATCAGTGGCAACTGATCCCACTACATGTGTATACAATTCAGCGTG
GGCAG-AAAAAAACTTGCACGCTTGGCTTATAAATGCACGTACAAGCCGTAGGGTGCAGCTCATCATCACTGCAGATTCC
ACAATATCAAGTAGCTCGA-CGCTCCTCGCAGGGAAGCCAAGTGAGCAAAGGTAGACAGAGCTGTATTAGCCATGAAGCT
AGTGATGTGCTTGTGCATCTTCATCGTTCTCGTCATCACCTCCTCGCCTATCGCGGTCTCCGGCGACCGTCCGCTGATGC
TGGGCCGACGGTGCCTGCAGGACACCGTGGTCATCGGCGGCGGCCCAACCCCGACAGGGGCGAGCACCACAGGGACGTTG
CCGCGTGACGCGGCGCCGGACATATCTGTTGATAGGTCGAAGAGGCTCAGCCCCGGGGGATCTAACCCCCAGCATCACTG
ATCTCATCATCGATATCAGCTTTCTGCATGCATGCCTATCTTATGCTGTCATTTGCCAACATTTCTCTACCCGACTTTCC
AAACTAGATTCCTAACAACGGCGAAGT-----------------------------------------------------
---------------------------------------------------GATGTGATCCATTTTTCTCCAACGTGAAA
GTGGATTTGAGGTTAAGTCCCTGGTCAATAATGCACGTTTTCCGTCTGCAATTTCCTTTCTTATGTATTGCCGCGTACTT
TATCTTGTAAACGACACACATACCATAATGAGTATATTAAA--------------AAGAGTTCCCTTGAATTTATCTCCA
ATTGTACCTGTCTTGACTTCCTAATTTAGACTTTGTT----TT-------------------------------------
---------------------------------------------TATTTGCAATCTCCTTCAGGTCCGATCTCAGCGAT
ACTTTCTTCGTTCTAAAATAC-----------------TCAACATGCAAACGTAATTTCACAATTACATTTCATTAGATT
ACGTTACAGTGCATCCTAATGATGCAGAGGGCTGGGGTTTAAACCTCCTTTAAAAAACAGATCACGTCACAAAAAAGACT
ACAAA-GTTACATCATGAAGCACTTTCCATTCCCTAAGAAAAGCACTTTCCATGATGATATAAGTAACAGTATGTGTTAG
TTTTGTTGAACCAATATCAGTTAACCTTTAGATATCATTTGTTAGTTGGAG-----------------------------
-ATCTATTTTGACAGTATAAAACAAGAAAGTCGAAATGGATATTGGACCACTAAGGATGCATATCTTGATGAAGTCAAAG
TA------------------------------------------------------------------------------
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>chr7D_183
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-----------------------CCTCTGGCTCTTAACTGCC-----CTGCCTTGTCCTTCTCCGTACTACTATTAAGCA
GGAGGATATATAAGAGGCACTAATGCCTAGTGTAAAGGTGCCGACACTTGAAGCACATGGATGATGACATACGCGAAACC
CAATCGGTCAACATGTCGAAATGCCATGTGAGTCTGATAACACGCAGAAGTAGATTAAGGTTTGCAATGCGCGATGACTT
GAAAAAGGATTATGCTGAGTGTGTATTATATCGGATGAA-TGAAAGGAACATGCATGTGGATTAGGCTGGATGCCTGGAT
GTGTAGATCCTTGTCTCCTTGATCATGTGTTGAGTTGACTTATGCCACATCAATTAATTTCTAAGTTCCAACTACGACAA
ACTCCATCGTGAAGTCAACATCTAAATCCAAAACATGATAAATGTGAATACATAATATCATATCATGCCAAATCAACCAG
AAACACACTTCAAAGGAAAGATGGATACGTACGTAAGGTAAAGGATGAGATGGAGCCATGGATGGTGAGAGG--------
--ACGTGT----------------------------------------CG-AAGCTCACGTACGTCGGCTAGATGCACAT
ATTTTTGCAATGTCTCGAAACAAATAACTGGCCAAATCAGTGGCAGCTGATCCCACTACATGTATATACAATTCAGCGTG
GGCAG-A--AAAACTTGCACGCTTGGCTTATAAATGGACGTACAAGC---AGGCTGCAGCTCATCATCACTGCAGATTCC
ACAATATCAAGCAGCTCGACCGCTCCTCGCAGGGAAGCCAAGTGAGCAAAGCTAGACAGAGCTGTATTAGCCATGAAGCT
AGTGATGTGCTTGTGCATCTTCATCGTTCTCGTCATCACCGCGTCGCCTATCGCGGTCTCCGGTGACCGTCCGCTGATGC
TGGGCCGACGGTGCCTGCAGGACGCCGTGGTCATCGGCGGCAGCCCAACCCCAACAGGGGCGAGCACCACAGGGACGTTG
CCGCGTGACGCGGAGCCGGACATATCGGTTGATAGGTCGAAGAGGCTCAGCCCCGGGGGATCTAACCCCCAGCATCACTG
ATCTCATCATCGAGATCAG----CTGCATGCATGCCTATCTTATGGTGTCATTTGTCAACATTTCTCTACTCGACTTCCC
AAACTAGATTCCTAACAACGGTGAATGCTGGTCCGGAGATTAATTCTCTCTTTCTCTCTCCCTATTTTTGTTTCCTAATA
AATTGATGTTCTGCGTGTGTGCAGAGTGTCTTAACCACTATACACCTACGCGATGTGATCAATTTTTCTCCAATATGAAA
GTGGATTTGAGTTTAAGTCCCTGGTCAATAATGCAAGTTTTTCGTCTGCAATTTTCTTA--TATGTATTGCCGCGCTCTT
TATCTTGTAAACGACACACATACCATAATGAGTGAGTGTACTAAAAACAGGAGAGAAGAGTTCCCTTGAATTTATCTTCA
ATTCTACATGTCTTGATTTCCTAATCTAGACTTGGTTATTATT-------------------------------------
---------------------------------------------TATTTGCAATCTCCTTCAGGTATGATCTTAGCTAG
ACTTTCTTCGTTCTAAAATACATGGCATTTTATAGCATTCAACATGC-AACGTAATTTGACAATTACATTTCATAAGATT
ACGTTA---------------------------------------------------------------CAAAAAAGACT
ACAAA-GTTACATCATGAAGCACTTTTCATGAAAAATATAC-----------------------TAATAATATGTGTTAG
TTTTGTTTAACCAGTATCAACTAACTTTTAGAAATTGTTTGTCAAGTTGGAGAAGCATGTCTGCACGCTTTCTGTGCCGT
CATCTAACTTGACATTATATAACAAGAAAGTCGAAATAGATATTGGACCACTAAAGATGCATATCTTGATGAAGTCAAAG
T---ATATTGTGTTAACGAAAAAGGACCGTTCCCTGCCCAAAAAAAAAAACGAAAAAGGACCGTTGAATTAATTTAAGGC
ATGATAAAGGA------------------------------GCTGAAGGCCAAAATGCAACTACACATACAATAATTAAG
AAACATGTTG
>SNPs
SSSSSSSSSSSSS------------S-----S-S----------SSS----S----S----S-----------S-----S
--S--------SS---S-----S-----S---S----S-S---S-SS-S----------S----S---S-----------
SSS---S---S-S--S-----S-------------------------S--------------------------------
-----------------S------------------S---S-------------S-------------------------
------------------------------------------------S-------------------------------
------------S------------------------------------------------S----S-----S-------
-------------------------------------------S---------S-----------------S-----S--
------------------------------------------------------------------------SS------
--S-------------------------S------------S---------------------------S-SSSSSSSSS
SS--------------S---S-----------------------------S--------------S-------S------
-------------------------S--------------------------------S---S---S---------S--S
-----S---------S-------------------------------S------------------------------S-
---S----------------------------S-----S---------------------S-------------------
----------------S--------S-----------S----------S---S---------------------------
-------S-----S--------------------------------S---S------S----------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
---------------------------------S--------S-------------------------------------
---------S------------S---------------------------------------------------------
-----------------------------S--------------S------S------------------S---------
----------------------------------------S------S-SS-----------------------------
-----------------------------S---S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S---------------------
---------------------------------------------------S---------------------S------
-----S--------------------------------------------------------------------------
-----S------------------------------------------------------------------S-------
-----------------------------------------------------------------------------S--
--------------------------S----------------------------------------S------------
--SS---------------------------------------------------------------------------S
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S---------S-------S
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>forward_722
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--------------------------------------------------------------TGGTGAGTGTGAGAGGAC
GT------------------------------------------------------------------------------
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>reverse_2359
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--------------------------------------GGAGCTGAAGGCCAAAATGC----------------------
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