>input_sequence_86000
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----------------------ATGGCAGGAACGAAGGGCGACGACGGACCGGCCATCGGCATCGACCTCGGGACGTCCT
ACTCCTGCGTGGCCGTGTGGCGGCCGGTGCACCAGCGCGTGGAGGTCATCGCCAACGACCAGGGCAACCTCACCACGCCT
TCCTGCGTCGCCTTCACCGACACCTGGCGTCTCATCGGCGACGCGGCCATGAACCAGGCCGCCATGAACCCCGTCAACAC
CGTCTTCGGTGAGAAGAGAACTACCAACTGA-------------------------------------------------
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>chr6A_1_TraesCS6A01G342600
CCTTTTCTGCTGCCGCTCTTTCTTTCTCCCTTTCCTTCCCTCTATTTCATCTCCATGCCTCCCTCTCGTAGGAACCAT--
CTCTGAAGCTGCCATGGCCACCGGGGAGCACCAGCGCGAACCTGCCGACAACCGCCATCTCCGGTCCGCTCTGCCGCCAG
TCGAGCTACCCCACCACTGCTCCCTCCCTTCATCTCGCTCCTCTCGTTGTGCTACTGCATATAACTATGCGGGGCTGAGC
TGTGCATCGCCGCCACCGCCCGAATATGCTCGTGCCCGACCTTTCTTCGCCACGTCGTTGTTCCTCTCGCATCGCCAGTG
TGCGTGCCACCGTCGTGGATCAGTTTGTCGCCTCACGCCAGTTGATCCTCTGCATCGCCTATAACCGAGAGAAGCCACCA
CCCCATGGGTTGCATCCTTGAA----AAAAAAATCTGCAATATCACCTCTATTGCAAATAAAAATAAAAATGCAACAAGA
CTTCTGTTAAAAAAAT-GTT-GCAAAAAATTTCCGTAACAAGATCTCTATTGCAATGGTGGAGACGCC----GGCTACTT
GAAGCACTAGATCTAACTGCTCGCAACCTGGCCGATCTTTTAAAAAGATGAGCCAGCAACGCGTAGCACACCCCTAAATA
TAATTGATTGAACACGTATACGTGTACAGAAGTCATAACGAAAAGAGCAATCAGTGAT-CAAATGCATTTTGTTATCTA-
-TTCCCTCTGAATTTACTATGAAATATGATGACCATCAATCTTGCACCTCCAATGGTGTGACGAGAACTCTACCGGATTC
AAATGCACG------------------------AACAACCCTTCATTTCACGGAGTACATGTACATTTGGCTT-GTGTAA
TTAC-----TGCTGAGGTTCGTTGGCCAGTGTAA----------------------------------------------
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--------------ACTTCTTCGGCTTCCGA------------------------------------AGTTACT------
--------------------------TTCCAGACTACGGCCCTCTCGCCTTCCTCCACTACGCGTTTAA-----------
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-------------------------------------ATAGAACCCAGCAATTCCCAAGCGTCACACTATTCCTTTTCCT
CTGCCT-TTTTGTTGCATGGAGATGGCAGGAACGAAGGGCGACGACGGACCGGCCATCGGCATCGACCTCGGGACGTCCT
ACTCCTGCGTGGCCGTGTGGCGGCCGGTGCACCAGCGCGTGGAGGTCATCGCCAACGACCAGGGCAACCTCACCACGCCT
TCCTGCGTCGCCTTCACCGACACCTGGCGTCTCATCGGCGACGCGGCCATGAACCAGGCCGCCATGAACCCCGTCAACAC
CGTCTTCGGTGAGAAGAGAACTACCAACTGACTGCCACCTACGAATATTTCCCTTTTTTAGTGGTAGCT---GTTCTGTT
CTTTAATTGAGTTTCTCAGGTTAGTGGGTTTGTGTGACGGCGTTTTGTGCGTGCGTTACATATATTGAATTATCAATTTG
TATAATTCACATCTAGATGTTTTTTTTAAGGATGTCACATCTAAACTCCCACAAATATATAATGTAGTAATAAAAAACAA
AAAAAACTAGGACAAAAGAAATAGATTACAAATAGAGTGGACATCAACTTAGATGTAACATAACTATGTCACATCTAGAT
GTCTCCTAGACAGACTCATTATTATTGACTATTGAGATGATCCCAGTAGTATCGACAAGATGGAGATGCATGCCCAAAGC
CTTAGATCCCTGACATCTCTTATATTCCTCAGTTGCCAAATGCTTACGCTGTTACGCAGCTAGCTATTCGATTCCAGCAT
CTTTTCTTCCAGACTTATTCATATTGTTCTGTGCCATTTACTGTTG----------------------------------
----------------------------------------------------------------TATTATTTAGTCACCC
TAAGAACCCTAGATAATGCTACCATGTTGTAAAACCTTCCAACTCACAAGCACTAAGAACCTCTTTAAGTAGCACGATT-
-------CTATATGCATGACTAAAAAATGTAGAATCAATTCCC----------------ATGT----------------G
ATTAAACTTGCGCAAAATGTTGTTTCATTACAGCATAGGAAAACACAAAAAATCAGCAAGTTTTAAGTCAGTGGAAAACT
TTTGGTGAAATCCGCAAACTAATATTTAGGAAAAGCAAGCTGCATGATACATTTCTCAAATCACACCAGCACATAAAAAG
TTATAGGAACCCAAAGCTCCTATGAAAAGTCTTGCAATCAATGTGGTCCGGAGAGGTTTCTTATGGAGGATATTGGGGTT
GATGTGTTGATAGTTAGGTATGTGCGAGTGCGACATGTTGCAATATCCATAGTTAATTATCTGGAAAGTATTTTCGGAAC
TTTAAACAAATACTTCATCCGTTCATAAATATAAGATGTTCTATCTTTTTCC
>chr6B_1
CCTTTTCTGTCGCCGCTCTTTCTTTCTCCCTTTCCTTCCCTCTATCTCGTCTCCATGCCTCCCTCTTGTAGGAACCACCG
CTCTGAAGCTGCCATGGCCACCGGAGAGCACCAGTGTGACCCTGCCGACAACCGCCGTCTCCGGGCCGCTCTGTCGCCAG
TCAAGGTACCCCACCACCGCTCCCTCCCTTCATCTCGCTCCTCTCACTGTGCTACCACATATGACTACGCGGGCCCGAGC
CGTACATCACCGCCACCGCCCGAATCTGCTCGTGCCCGACCTTTCTCCGCCACGTCATTGTTCCTCTCGCGTCGCCAGTG
TGCGTGCCACCGCCGTGGACTAGTTCGTCGCCTCACACCGGTTGATCCTCTGCATCGTGTGTTGCCGAGAGACGCCACTA
CCCCATGGGTTGCATCCTTGCCTGGGAAAAAAATCTGCAATATCACCTCTGTTACAAA--------AAAAAGCAACAAGA
CTTCTATAAAAAATATTGTT-GCAAAAAATTTCCGCAACAAGATCTCTATTGCAATGGTGGAGGCGTCGTTTGGCTACTC
GAAGTGCTAGATCTGACGGCTCGTGACCCAGCCGATCTTTTAAAAAGATGAGCCAGCAACGCATNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAACCCTTCATTTCACGGAGTACATC------TGGCTTTGTGTAA
TTACTACTGTACTGAGGTTCGTTGGCCAGTGTAAGGCTGGTCATAGTGGGAGTAACATAGCTAGTTCTAGGTCATCGATT
TGAGGAATTAAATATGTGTTATATGTCATGAAAAGTATATCACCAAATTTCTACACGGATGTAGTTCCTAAATATATATT
TTTTGTCACATATAATACATATTTAGATAGTTAAATCGTCAACCTAGAATTACGCGAATGACTTATTCACTCAGACGGAG
GTAGTAATATAGATGCCACATAAGCACAAATAATGATGTGTCAACTAGTTAATGAGGAGAAAGACAAATAGAGTAACATA
ATATGTTACCATCACATAGCGCTTCCCAATGTATAATGAGTCTACAAAGTAATTAATAAAGACATGTATATTACCACACC
TATGACATTATCCACTAGAAGGTACTCCCTCCGGTCCTCTATTCTCTGCGTATAACTTGAATCACGCATACCAAGGATAG
CTGCCCTCGTTTTTTTCTGGACAAAACTACCCTTGCGTAGATGCTACATGCATGGATTTAAATTTAAAAGCTGGGTTATT
ATAACCGTGCATGCAGCTGATTGGCTCTCCTCATGTCCCTCCCTGCATGCGCGCACACCTTCCTAGTTTTTCTGCATGCA
ACATTTTTCTCTCTGCGCATGGAAGGGAAGTAGACCAATACAGGCGTGGGAGGCGAGTAAATTAGGGAGATGAATTAACT
GCACGCACTGCATGCGAAGCGAGTTATTAGGGGCAGATTTGGTAAAGATCGCCAGAAGAGAGGAATGCGCAGACCATATG
GGGAAAAACGGAAAAAAGTTATGCGCAAAGAAAAAAGGACCGAAGGGAGTAATAACATAGACTAGTAAGTTACTCTCCAC
TATGACTAGCCTAAACTTCTTCAGCTTCCGA------------------------------------AGTTACTACTACT
ACCTCGTACTCCTAGCTATAGCTAGTTTCTAGCCTACGGCCCTCTCGCCTTCCTCCAATACGCGTTTAAGAGCAAGTACA
ATAGTCCTACTAAGCAGGCTATAAGGGATTCCACATCAGCAATATTCTGAGCTGGAGGAGAGTCAAGACAGGAGAGAGAA
GGTAGCGAGCGCTTCATCAAGCACCCGGCTACAACACAAGACGCGAGAAAGTTCCGCCTGCTTGCAGCCCGAAGCAAGCG
CTAGTGCTGCCGTTTTCTGTTCCCAGCGTCCCGCTGTCCAATGAACAGCGTTTTGCATGCATGCAAACATTGATTACTTT
AACTATCCAGCAGCGCGTATAGAGCCAGTCTTAGGCCCCTTCCAATGCTCCACCTTGTACAGGTGCTAAGCTTTCCACGT
AGGCAAAAAATCTGATGTGGCAAGTTATTTAAGAGGAGAGAGATGAGTGTGGTGACCCCAGGAAGAAACAGTGCTAAGCG
CGTGAACCTAGGCAAAACATTTAAATGAAGGAAGCCCACCAATACATGAAGAGATTTAGTTGCTAAATCATTAAATAAAG
CAAGCTTAGCAACCATTAGCTAAGCACCTATGCATTGGGGAGTATAGTTGCTAAGCTATTTAATGTGCTTAGCACCTCAT
CTAAGCACCCATGTATTGGCAGCAGCCTTATTGCACGAGATTTCTTTTATGAAGGCTACTGCTGACATGGAGCTCGTATA
CAGCTAGTAGCCGGCGCTTCTATTAACCATGCTCTAAATAGAACACTGCAATTCCCAAGCGTCACGCTATTCCTTTTCCT
CTGCCACTTTTGTCGCGTGGAGATGGCAGCAGGCGCGAAGGCCGACGGGCCGGCGATCGGCATCGACCTCGGGACGACCT
ACGCCTGCGTGGCCGTGTGGCGGCCAGTGCACCAACGCGTGGAGGTCATCGCTAACGACCAGGGCAACCTCACCACGCCG
TCCTGCGTCGCCTTCACCGACACCTGGCGGCTCATCGGCGACGCG---------------GCCATGAACCCCGTCAACAC
CGTCTTCGGTGAGAAGAGAACTATCAACTGATTGCCACCTAAGAATTTTTCCTCTTTTTAGTGATAACT---ATTCTGTT
CTTTAATTAAGTTTCTCAGGGTCGTTGGTTTGTGCGAGGGCGTTTTGTGCGTGTGTTACATATATTTAT-----------
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---------------------TTATTGATTATTGAGAT--------------------GATGGAGATGCATGCCCAAAGC
CTTAGATTCCTGACATCTCTTATATTCCTCAGTTGCCAAATGCTTAC----T----CAGCTAGCTACTCGATTCCAGCAT
CTTTTCTTCCGGGCTTATTCATATTGGTATGTCCCTTTTTTTTTGAAACGGAGGCAAAATTATTTGCCTCATCGATTAAT
TAAGAAGAAGAGAATTGCCCGGTTAATTTACGAAAAACCGGACGAAAACCGTGTCTGTCCCATTTATTATTTAGTCACCC
TAAGAACCCTAGATAATGCTACCACGTTGTAAAACCTTCCAACTCACAAGCACTAAGAACCTCTTTAAGAGCAGGAT---
------------------ACTAAAAAATGTAGATTCAATTCACATGTCCATTCAACCCTATGT----------------G
ATTAAACTTGTGCAAAATGTTGTTTGATTACAGCATAGAAAAACACAAAAAACAAT-AAGTTTTAAGTCAGTGGAAAACT
TTTGGTGAAAT---------------------------------------------------------------------
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>chr6B_79
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CTCTGGAGCTGCCATGGCCACCGGGGAGCACCAGTGCGACCCTGCCGAAAACCGCCGTCTCCCGCCCGCTCCGCTGCCAG
TCGAGGTACCCCACCACTGCCTCCTCCCTTCATCTTGCTCCTCTCGTTGTGCTACTGCATATTACTACGCGGGCCCAAGT
TGTGCCATCA--------CCCGGATCTGCTCATCCCCGACTTTTCTCCACCACGTCACCATTCCTCTCGCGTCACCAGTG
TGCGTGCCACCGCCGTGAACTAGTTTGTCGCGTCACGCCGGGTGATCCTCTGCACCGCCTGTAGCTGAGAGACACCACCA
CCCCATGGGTTGTATCCTTGTGTGGGAAAAAAATCTGCAATATCAACTTTGTTGCTAA--------AAAATGCAACAAGA
CCTCTATTGAAAAAAATGGACGCAAAAAATTTCTGCAACAAGATCTCTATTGCAATGATGGAGGCGTCGCTTAGCTACTC
GAAGCGCTAGATCTGATGGCTCCCGACCCGGCTGATTTTTAAAAAAGATGAGCCAGCAACGCGTAGCACACCCCTAAATA
TAATTGATTGAACACGTATACGTGTACAGAAGTCATAGCGAAAAGAGCAATCGGTGATACAAATGCATTTTGTTATACAT
TTTCCCTCTGAATTTACT------TATGATGACTATCAATCTTCCATCTCCA----------------------------
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>chr6A_520
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-----------------------------------------------TATTGCAATGATGGAGACGTC----GGCTACTC
GAAGCGCTAAATCTGACGGCTCGCGGCCCGGCAGATATTTTAAAAAGATCAGCTAGCGGACTGTAGAACGTCTCTACAAA
TAACCGATTGAACATGTATACGTGTACAGAAGTCATAGCGGAAAGAGCAATCAGTGATACAAATGCATTTTGTTATTT-T
TCCCCCTCTGAAATTACT------ACTTATGAAATAGGACAAAAACT--------------------CTCTACCGGATTC
AAATGCACG------------------------AACAACCCTTCATTTCACGGAGTACATC------TGGCTT-GTGTAA
TTAC-----TACTGAGGTTCGTTGGCCAGTGTAA----------------------------------------------
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--------------ACTTCTTCGGCTTCCGA------------------------------------AGTTACT------
--------------------------TTCCAGACTACGGCCCTCTCGCCTTCCTCCACTACGCGTT--------------
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----------------------------------TAAATAGAACCCTGCAATTCCCAAGCGTCACACTATTCCTTTTCCT
CTGCCACTTTTGTCGCGTGGAGATGGCAGCAGGCACGAAGGGCGACGGGCCGGCGATCGGCATCGACCTCGGGACGACCT
ACTCCTGCGTGGCCGTCTGGCGGCCGGTGCACCAGCGCGTGGAGGTCATCGCCAACGACCAGGGCAACCTCACCACGCCT
TCCTGCGTCGCCTTCACCGACACCTGGCGTCTCATCGGCGACGCG---------------GCCATGAACCCCGTCAACAC
CGTCTTCGGTGAGAAGAGAACTACCAACTGACTGCCACCTACGA-TATTTACTTTTTTTATTAATGTTAGTCGTTCTGTT
CGTTAATTAAGTTTCTCAGGTTAGTGGGTTTGTGTGACGGCGGTTTGTGCGTGTGTTACATATACTGAATTA--------
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------------------------TTGATTATTGAGATGATCCCAGTAGTATCGACAAGATGGAG----ATGCCCAAAGC
CTTAGATCCCTGACATCTCTTATATTCCTCAGTTGCCAAATGCTTAATTAAT----CAGCTAGCTATTCGATTCCAGCAT
CTTTTCTTCCAGGCTTATTCATATTGTTCTGTGCCATTTACCATTG----------------------------------
----------------------------------------------------------------TATTATTTAGTCACCC
TAAGAACCCTTGATAATGCTACCATGTTGTAAAGCCTTCTAACTTACAAGCACTAAGAACATCTTTAAGTAGCACGATAC
TATAATACTATATGCATGACTCAAAAATGCAGATTCAATTCCC----------------ATGTCCACTCAATCCTATGTG
ATTAAACTTGCACAAAATGTTGTTTGATTACAGCATAGGCAAACACAAAAAACAAGTT-GTTTTAAGTCAGTGGAAAACT
TTTGGTGAAATCTGCAAACTAATATTTAGGAAAAACAACCTGCATGATACATTTCTCAAATCACACAAGCACATAAAAAG
TTATAGGAATCCAAAGTTCCTACGAAAAATCTTGCAATCAATGTGGTCCTAAGAGGTTTTTTATGGAGGATATCGGGG--
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>chr6B_743
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-------------------------------------AATCTTTCATCTCCAATGGTGTGATAAAAACTCTACCGGATTC
AAATGCACG------------------------AACAACCCTTCAAATCACGGAGTACATC------TGGCTT-GTGTAA
TTAC-----TGCTGAGGTTCGTTGACCAGTGTAA----------------------------------------------
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--------------ACTTCTTCGGCTTCCGAGTACAACTACTACTCCTACCTCGTATTCCTAGCTATAGCTAGT------
--------------------------TTCCAGCCTACGGCCCTCTCGCCTTCCTCCACTACGCGTT--------------
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----------------------------------TAAATAGAACCCTGCAATTCCCAAGCGTCACACTATTCCTTTTCCT
CTGCCACTTTTGTCGCGTGGAGATGGCAGCAGGCGCGAAGGGCGACGGGCCGGCGATCGGCATCGACCTCGGGACGACCT
ACTCCTGCGTGGCCGTCTGGCGGAAGTCGCACAACCGTGTGGAGGTCATCGCCAACGACCAGGGCAACTTCACCACGCCG
TCCTGCGTTGCCTTCACCGACGCATGGAGGCTCATCGGCGACGCGGCTGTGAACCAGGCCGCCATGAACCCCGTCAACAC
CATCTTCGGTGAGA------------------------------------------------------------------
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>SNPs
---------SS----------------------------------S--S-----------------S----------S--
----------------------------------S----S----------------S-------S---------------
-----S--------------------------------------------------------S----S-----S-S----
--------S----------------S--------------------S---------S-------------S---------
------------S------SS------------------S--------------------S--S--------S-------
--------------------SS----------------------------S-------SSSSSSSS--------------
-----S-----------------------------S------------------------------S------------S
-----S--------S--S------S---S---------------------------------------------------
-------------------------------------S--------------------------------------S---
------------------SSSSSS---------S---------S--S--------------SS-S---------------
------------------------------------------------------------SSSSSSS-------------
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----------------------------------------------S---------------------------------
-----S-------S--S------------S-SSS-S-SSS-S------S-----S---------------------S---
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-----------------------------------------------SS-------------------------------
----------------------------------------------------S----------S--S-------------
--------S--------------------------------------------S------------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS-------S---------------------------------------------------
-----------------------------------------------SSSS-SSSS------------------------
------------S-----------------------------S-------------------------------------
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------------------------------------------------------------------------------S-
---------------------------------S----------------------------------------------
-------------------------S--------------------------SS--S-----------------------
------------S---------------------S---S---------------------------S-------------
---------S------S-----S-----S--------------------SS--------S-------------S----SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_785
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---------------------------------------------ACCTCCAATGGTGTGACGAG---------------
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>reverse_3935
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--------------TAGGTATGTGCGAGTGCGAC----------------------------------------------
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