>input_sequence_85986
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--------------------------------------------ATGGCGTCGCGGCCGTCGCTGAAGTCGAAGCCGAAG
GGCAAGGGTGGGAAGAGGGGCTCGTCCGCGGCCGAGGACGAGCAGTCCACCGCGGCGGTGGCGGTGCAGCTCGCCAAGGA
GTGGAGCACGTGGACGATGAAGACGGCGAAGGTGGTGGCGCACTGGGGCTTTATCCCGCTCATCATCGTCGTCGGCATGA
CTAAGGGAGACGAGCCCAAACCTAGCTTGCTCCAGCTTCTGTCCCCCGTCTGA---------------------------
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>chr3D_1_TraesCS3D01G226400
CTTCTATGTCTCCATCCTTGACCTTTTCACGAATGGAGTTGAAGCGTCTCTTGATGTGTTTGGTTCTCTTGTGAAACCTG
GATTCCTTCGCCAAGGCAATTGCTCCAGTGTTGTCACAAAAGATTTTCATTGGACCCGATGCACTAGGTATTACACCTAG
ATCGGATATGAACTCCTTCATCCATACTCCTTCAGGTGTTGCTTTCGAAGCAGCTATGTACTCTGCTTCACACACATAGA
TCCCGCCACTTCTCAAGGAACTGCTTCTAGAACTTTTTTAACATGTGAAGAAATTTTGAAAAACATGAACTTTTTTTGGA
ATTCAAGAAATTTTGAAACCACGAACATTTTTGGAAAGCTCCAAACATATTTTGAATTTGTGAACAAATTTCAGAAAAAG
AGAACTTGTTTTTTTAACCTTGAACCTTTTTTAAACGTAATTTTTTTTCTAAATTTGTGAACAAAGTTGAAAAAAGGAAC
A-TTTTTAAATTTTGGAATTCAAACTTTTATAAAATAAAAAATT-----------------GAAAAAGAATAGAAAAATA
AACAGAAAAAAT--ATAAAACTTGAAAAGGAAGAAAGAAGAAAAGAAACAGAAACAGAA---AAAAAGGGAAAATGTGAA
AAGCCAAAAAAGCAGTAAAAACCGCCTTGGGAACCAAATCGGGATCCTGTGGCATGGTAAATCGACCAGC----------
----------AGTGGGCCGGCCCATGTCGTTCGCTCGCACCTGTTCCCTGTTCGTTTCAACGAAAGTTTGTCGCAGTTAG
CGTAAAATAGAATATTCGATGTCCACAATGCCCAGCGCCTGGTTAGTTGGAAAGTTTGGCCCAATTCAAAGATAAACCTA
GCCCAATAGCATTTGAGGAGAGGT---------------------------------CTAGCCAAACACGAGAAGGACTG
GCCCAGGAAGCAGCCAATATTAACCGGAAACAACGCACCAGATCAAACGACAGATCAACACATCCCCAAAGG--------
CTAGGGTTTTCGTCCAGCGAATCGAAGAATCAAGAGGAGTCGCCATGGCGTCGCGGCCGTCGCTGAAGTCGAAGCCGAAG
GGCAAGGGTGGGAAGAGGGGCTCGTCCGCGGCCGAGGACGAGCAGTCCACCGCGGCGGTGGCGGTGCAGCTCGCCAAGGA
GTGGAGCACGTGGACGATGAAGACGGCGAAGGTGGTGGCGCACTGGGGCTTTATCCCGCTCATCATCGTCGTCGGCATGA
CTAAGGGAGACGAGCCCAAACCTAGCTTGCTCCAGCTTCTGTCCCCCGTCTGATCCAATCCCCGGCGAGCCCTAGACTGG
ATCGATCCATCTCCTTTTAGTTACTATACTAGTAGATGTTTTTGCTGTTTATTGAATCCTGGTGGTTGAGTTCTTGATCC
CTGGGTGGTGATCTTTTATCTGATCTGTGTCTAATAATGTTATGTGGTCGGATCGATCCTGGATTGGATCGGATCTTGTT
AGATACCTGAGATGCTACGGATCTGCTATTAATATATTGTACTATGTTGAACTTTCAGTGTTAGGTGTCTTGAGTTGTAT
TTCTCTGCCTGATGCGTGTGTATGTTTTAATTGAACTAATTGCTTTGATTGATTAAAAGTAAGCAGTACTGCTCATTATT
GCTGTGTTGGG-AATTTGGGTATTCTTGGTGCCTGAATGGTCATTCATTCAGTCTACAATGCTAGCAGGAGCTTTGCTGC
TTCAGCAGCCTAGATGGATTTATGGAACACCAGAATGCATGCCAGTT---------------------------------
-------------------------------------------GATTGAGGCCATGGC--ATTAGTTCGTTG---TGTTG
TTGGGACACACAGTTTATACCTGATATAAGG--------------------TTGTTCTGAAGAAACTGCAATGTTCTGAA
GAAGCTGTCATCCC------------------------------------------------------------AATATT
AAGGCACTTGCAAATAGTAAGACGTGATTAACGATTGCCACATTGAAATTTTGTGACGAGGACTACATAGACAACGTTTT
AACGTTGTATGGTGTCTAATTTCATACAG---ATTATGGTACTATTTGTTTACATCACTGTCTGTAAAGATTAATTGTTT
GAACTATTGTTATGATCTTAAGAAGTTGACGTTTAACTTTAACTTGCTGTGATCATCACACTTCTGTTTGTGTACATGTA
CTTCGATTGCCAACTTATACAAGTCGAATATACTCTTGCTTTATTGCACCCTGCAAACAAATTACAGGTATCCATCTATT
CTGACCACATCAACGGAGGTGATATCATGTCCAGTCCAGTAACAAGGTTACACACCATCTAAACCACCATAACCCTGAAG
AAATTAGCCGCTTCACAA
>chr3A_265
TTCTGGAACG----------------------------------------------------------------------
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---------------------------------TTTTCTAACCTGTGAACAAATTTTGAAAAACAGGAAAAA--TTTGGA
ATTCAAGAAAATTTGAAACCACGAACATTTTTGGAAAACTCTGAACATATTTTGAATTTGTGAATAAATTTCAGAAAAAG
GGAAC---TTTTTTTAACCCTGACCCTTTTTCAAAACGTATTTTTTTTCTAAATTTGTGAACAAAATTGAAAAAATGAAC
A-TTTTT-TAATTCAGAATTCAAAATTTTCTAAAATAAAAAATA-----------------GAAAAGGAA----------
-ACAGAAAAAAAAGATAAAACTTGAAAAGGAAGAAAGAAGAAAAGAAACAGAAACAGAAA-TAAAAAAGGAAAATCTGAA
AAGCCAAAAAACCAGTAAGAACCGCCTTGGGAACCAAACCGGGATCCTGTGACTCGGTAAATCGATCAGA----------
----------AGTGGGCCGGCCCATGTAGTTCGCTCGCACCTGTTCCCTGTGCGTTTCAATGAAAGTTTGTCGCAGTTAG
CGTCAAATAGAATATTCGGTGTCCACAATGCCCAGGTCCTGGCTACTTGGAAAGTTTGGCCCAATTCAAAGATAAACCTA
GCCCAA-AGCATTTGAGGACCCATGAGAGGTCTCCCAGAGAGATACTACTGTAGTTGCTAACCAAACACGAGAAGGACTG
GCCCAGGAAGCAGCCAATATTAACCGGAAACAACGCACCAGATCAAACGACAGATCAACACATCCCCAAAGGCCACGTCT
CTAGGGTTTTCGTCCAGCGAATCGAAGAATCAAGAGGAGTCGCCATGGCGTCGCGGCCGTCGCTGAAGCCGAAGCCGAAG
GGCAAGGGTGGGAAGAGGGGCTCGTCCGCGGCCGAGGACGAGCAGTCCACGGCGGCGGTGGCGGTGCAGCTCGCCAAGGA
GTGGAGCACGTGGACGATGAAGACGGCGAAGGTGGTGGCGCACTGGGGCTTCATCCCGCTCATCATCGTCGTCGGCATGA
CTAAGGGAGACGAGCCCAAACCTAGCTTGTTCCAGCTTCTGTCCCCCGTCTGATCCCATCCCCGGCGAGCCCTAGACTGG
ATCGATCCAGCTCCTTTTAGTTACTA--CTAGTAGATGTTTTTGCTGTTTATTGAATCCTGGTGGTTGAGTTCTTGATCC
CTGGGTGGTGATCTTCTATCTGATCTGTGTCGAATAATGTTATGTCGGTGGATCGATCCTGGATTGGATCGGATCTTGTT
AGATACCTGAGATGCTACGGATCTGCTATTAATATATTGTGCTATGTTGAACTTTCAGTGTTAGTTGTCT-GAATTGTAT
TTCTCTGCCTGATGCGTGTGTATGTTTTAATTGAACTAATTGCTTTGATTGATTAGAAGTAAGCAGTACTACTCATTATT
GCT-TGTTGCGTAATTTTGGTACTCTTGGTGCCTGACTGCTCATTCATTCAGTCTACAATGCTAGCAGAAGCTTTGCTGC
CTCAGCAGCCTAGATGGATTTATGGAACACCAGAATGCACGCCAGTT---------------------------------
-------------------------------------------CATTGAGGCCATGGCTAATTAGTTAGTTGTGTTGTTG
TTGAGT--CACAGTTTATACCTGATATAAGG--------------------TTGTTCTGAAGAAACTGCAATGTTCTGAA
GAAGCTGTCATCCC------------------------------------------------------------AATATT
AAGGCACTTCCAAATAGTAAGCCGTGTTAAACGATTGCCACATAGAAATTTTGTGACGAGGACTAGATAGACAACGTTTT
GCCAGTT---------------------G---ATTATGGTACGATTTGTCTACATCACTGTCTGTAAAGATTAATTGTTT
GACCTATTGTTATGATCTTAAGAAGTTGACGTTCAACTTTAACTTGCTGTGATCACCACACTTCTGTTTGTGTACATGTA
CTTCGAATGCCAACTTATACAAGTCGAATATACTCTTGCTTTATTGCACCCTGCAAACAAATTACAGGTATCCATCTATT
CTCACCACATCAACGGA------ATCATGTACAGTCCAGTAACAAGGTTACACACCATCTAAACCACCATAACCCTGAAC
AAATTAGCCGCTTCACAA
>chr3B_265
TTCTGGAACG----------------------------------------------------------------------
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---------------------------------TTTTTTAACCTGTGAACAAATTTTGAAAACCAGAACTTT--TTTGGA
ATTCAAGAAAATTTGAAACCACGAATATTTTTGGAAAACTCTGAACATATTTTGAATTTGTAAACAAATTTCAGAAAAAG
GGAAC---TTTTTTTAACCCTGAGCCTTTTTCAAAACGTA-TTTTTTTCTAAATTTGTGAACAAAATTGAAAAAAGGAAC
AGTTTTT-AAATTCGGAATTCAAATTTTTCTAAAATAAAAAAATTGAAAAAGACATGAATTGAAAAGGAA----------
-ACAGAAAAAAAACATAAAACTTGAAAAGGGAGAAAGAAGAAAAGAAATAGAAACAGAAATTAAAAAAGGAAAATCTGAA
AAGCCAAAA--CCAGTAAAAACCGCCTCGGGAACCAAACCGGGATCCTGTGGCACGGTAAATCGACCAGCAGAAAAGAAA
ATCGACCAGCAGTGGGCCGGCCCATGTCGTTCGCTCGCACCTGTTCCCTGT---------------------GCAGTTAG
CTTCAAATAGAA-------TGTCCACAATGCTCAGCGCCTGGTTACTTGGAAAGTTTGGCCCAATTCAAAGATAAGCCTA
GCCCAATAGCATTTGAGGACCCTTGAGAGGTCTCCCAGAGAGATACTACTGTAGTTGCTAACCAAACACGAGAAGGACTG
GCCCAGGAAGCAGCCAATATTAACCGGAAACAACGCACCAGATCAAACGA----TCAACGCATCCCCAAAGGCCACATCT
CTAGGGTTTTCGTCCAGCGAATCGAAGAATCAAGAGGAGTCGCCATGGCGTCGCGGCCGTCGCTGAAGCCGAAGCCGAAG
GGCAAGGGTGCGAAGAGGGGCTCGTCCGCGGCCGAGGACGAGCAGTCCACCGCGGCGGTGGCGGTGCAGCTCGCCAAGGA
GTGGAGCACGTGGACGATGAAGACGGCGAAGGTGGTGGCGCACTGGGGCTTCATCCCGCTCATCATCGTCGTCGGCATGA
CTAAGGGAGACGAGCCCAAACCTAGCTTGCTCCAGCTTCTGACCCCCGTCTGATCCAATCCCCGGCGAGCCCTAGACTGG
ATCGATCCATCTCCTTTTAGTTACTA--CTAGTAGATGTTTTTGCTGTTTATTGAATCCTGGTGGTTGAGTTCTTGATCC
CTGGGTGGTGATCTTTTATCTGATCTGTGTCTAATAATGTTATGTGGTCGGATCGATCCTGGATTGGATCGGATCTTGTT
AGATACCTGAGATGCTACAGATCTGCTATTAATATATTGTGCTATGTTGAACTTTCAGTGTTAGTTGTCT-GAGTTGTAT
TTCTCTGCCTGATGCGTGTGTATGTTTTAAGTGAACTAATTGCTTTGATTGATTAACAGTAAGCAGTACTGCTCATTATT
GCTGTGTTGCGTAATTTTGGTACTCTTGGTGCCTGACTGCTCGTTCATTCAGTCCACAATGCTAGCAGAAGCTTTGCTGT
TTCAGCAGCCTAGATGGATTTATGGAACACCAGAATGCATGCCAGTTGATTGAGGCCATGGCTAATTAGTTAGTCGTGAA
ACAGCCTAGATGGATTTATGGAACACCAGAATGCATGCCAGTTGATTGAGGCCATGGCTAATTAGTTAGTCGTGTTGTTG
TTGGGACACACAGTTTATACCTGATATATAAGGTTGTTCTAAAGAATTGTCTTCTTGTAAAGGAACTGCAATGTTGTT--
-AAGCTGTCATCCCCTCGCAACTGTGAAATCATTTGTCACCCTCCAAGCGAACATTCACCAGCTAAGGGTCCTTAATATT
AAGGCACTTACAAATAGTAAGCCGTGTTTAACGATTGCCACAGA-AATTTTTGCGATGAGGACTAGACAGACAACGTTTT
GCCGTTGTATGGTGTCTAATTTCATACTACAAATTATGATATGATTTGTCTACATCACTGTATGTAAAGATTAATTGTCT
GAACTATTGTTATGTCCTTAAGAAGTTGACGTTTAACTTTAACTTGCTGTGATCATCACACTTCTGTTTGTGTACATGTA
TTTCGAATTCCAACTTATACAAGTCGAATATACTCTTGCTTTATTGCACCCTGCAAACAAATTACAGGTGTCCATCTATT
CTCATCAACA-----GAGGTGATATCATGTCCAGTCCAGTAACAAGGTTACACACCATCTAAACCACCATAACCCTGAAG
AAATTAGCCGCATCAC--
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S------S---------------S---S--SS------
----------S--------------------------S---SS-------------------------------------
S----SSS-----------S---S-------S---SSSS--------------------------S--------------
-------S--S--S----------S----S------------------------------------S---SSSSSSSSSS
S----------S-------------------------------------------------------S-------S----
-----------S--------------------------S---------------S-------------------------
---------------------------------------------------S--------S-------------------
---S--------------S--------------------------S----------------------------------
-------------------SSSS-------------------------------------S-------------------
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--------------------------------------------------------------------S-----------
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---------------------------------------------------S----------------------------
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--------------------------SS----------------------------------------------------
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----------------------------------------S-----------------------S-----S---------
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---------S-------S----S-------------S--S----------------------------S-----------
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-------------------------------------------------------------------S------------
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---------S-----------S----S----------------S---------------------S--------------
SS-------------------------S--------------S------S------------------------------
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------S-------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
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>forward_150
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--------------------------------------------------TGGACCCGATGCACTAGGTA----------
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>reverse_1252
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---------------------------------------------------TATCCCGCTCATCATCGTCG---------
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>forward_248
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--------------------------------------------------------------------CACACACATAGA
TCCCGCCA------------------------------------------------------------------------
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>reverse_2403
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--GACCACATCAACGGAGGTGA----------------------------------------------------------
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