>input_sequence_85975
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-----------------------------------------ATGACAAACGTCCAAGTCGAGCTGGGCTGCCAAGTTCTG
GTGAAAGCATTGCAAGGTACCGAGTCCGACTTAGCTGCCGAAGGAATCTTGTTTAGAGAAATCCGTGAGTTTGCCAGGTT
GAACTTCAATTGCATTTCTTTCTCTTTTGCCCCGAGGGCTTGTAATGGGTTAGCGCACGAGTTAGTAGCCTTTGGTGCTC
GTCGTCCT------------GTGAGCCGGGAACTATGGTCTGAGGACCTCC-GAATGATGTAA-----------------
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>chr2D_1_TraesCS2D01G447700
TTGGTCCGATCCCTGGCTGAATAGAGAAGGAGTGCGAGTCCCAGGTACACCAAGAGGACGCTGCCTGTTGACCAAGGTTT
GCGAACTAGTTGATCCAGACACCCATAACCGGGATGAGAGGCTAGTGAGAGACATCTTCTCGGCAGAGGAAGCAAAAATT
ATTCTGGCTACACCAGTCCGAGAGGAGTATGGTGATTTCTATGCTTGGTTTCATGATAGCAAGGGCCAGTTCTCGGTTAA
GTCAACCTACAAACTGTATGTGCAGGGAAGAGATGCTGGAATATCGGAAACGTCTGATCCACAGCTAGCTGATTGGGAGT
GGAAAGAGATATGCTCTCTGCCTTGTCAACCCAAGATCCAGCAGTTTATGTGGCGTCTTGCCCACAATAGTCTCCCCC-T
GAAGCTGAATATAAAGCGAAGAGGCATCAACTGCGACACCCTATGTGTTTGCTGCAGAAGATTGGATGAAGATGGGGCAC
ACCTATTTCTGAAATGTAAGCAGGTGAGGAGAGTATGGCAATCTCTTCAGCTAGAGGCAGTGAGAGAAAGACTATGTGCA
TGCAACAACGCTAGTGATATGATGCATGCATTGCTCCGGCTGCCGGAGGATAAACGAATACTTGTTGCATGCCTGCTCTG
GAGATGGTGGACCTGGAGGAACAAGATAAATGCTGGAGAAAGTGTTGGAAGACTAGACAGCTTGCCTGCAGAGATTAATT
ATTGGGCTATTGAATCACTAACTCTGTGCAGGCCCCATCGTACGGTGCAGCGGCTACAGCCATCGCATGCTTGGAGAAGA
CCTGTGGAGGATGTGTTAAAAATCAACTGTGACGGGGCCTTTTCAGAACGGCAGGGCACAGGTGGATGGGGTTTCGTTGT
CAGAGACCATCTGGGAGATGTTCGAGGTTCAGGTGCGGGATTCCTGCGCAATGTCGCCTCTGCAGTACAGGCGGCAGCAG
AAGCATGTGCTGCTGCTCTTGAGGCGGCGACAAGCTGGGGAATGACAAACGTCCAAGTCGAGCTGGGCTGCCAAGTTCTG
GTGAAAGCATTGCAAGGTACCGAGTCCGACTTAGCTGCCGAAGGAATCTTGTTTAGAGAAATCCGTGAGTTTGCCAGGTT
GAACTTCAATTGCATTTCTTTCTCTTTTGCCCCGAGGGCTTGTAATGGGTTAGCGCACGAGTTAGTAGCCTTTGGTGCTC
GTCGTCCT------------GTGAGCCGGGAACTATGGTCTGAGGACCTCC-GAATGATGTAACTGTTCGTCGGGCCGGC
ACTATGGCTGGACCTGTGT--------GAGTCCATGTGTTCCATCTCAAAAAAAAAAGAGCCTGGGCCGCCAGCCCATGC
CGGGACGAGTTGAGCGAGCCAGCCGAACGGCGCCCAACGGAGCCGGAA-GCTGGCGCCGCGGATTTAGCGAAGCTGCCGA
TTTTTGGGGGTTTGCGAGAGC--AAAAAAACTGGCTGTCACACACCCGTGCCTGTCCTCCACTGCCGTCTGCCGCCGGCC
CCCT---CCCTCCCCCCTTGCTTCGTCCGTCCTACTCCTGAACCTGTCGCCGCCCAATCCGGCATCGCCT---------A
GCTTCATTCCCCCCCTCCTGCCGCCGGAGCGACCCTCGAAGCGGCCGGCGGATCTCAGGCGCCCTCCTCCCCTCCCCTCC
CCTCCCCTCCCCTCCGCTGGGCCGACACGCAGGCCGGGCGCGGCTTCTTCTCCTTGGGTAAGCAAGCCCTAGCTTTGCTC
TGCTTTGTTC-GGGTCACTGCCGTTACGTTTCTCTCCGGCCTACTTTTCTTCGCCGCGAATCAGTCGAACCCGACCAGAT
CCCTCTTCCTCGAGGCCTTTCCCCGCCGACCCCGGCCCCCGTTCCTAGGGC-----------CGTCAATCAGGACATCGC
TAATCGCAGGATTAGCGGCGCCGCTAGCTTCGCATTCTGATTTGTACGCTAGCTGCTAGTA-------TCAGATTTCACT
GTGAATAAGTGTTCTAAGGGTGCACAGAAGCTCAACCTCGTGTAAATTGTATCATATCCAGTCACTCGTATGAACATAGA
AAATAGTGAATTACATTCTAAAACTAGTAGGCATGGGTGCGACGTGCCAAGGTTGCCATTGATATTTTTCAACCATATTT
CGATTGCTCTTGAAAATACATGGCAGAAATGGCAA-----ACCAAACAGTCACAGTCACATAAATCTACAGCAAATTCTC
ACCATTGTCTCCCCAACTCATTCTGGAATACAT---------TTATGGTTAACAGATCACACATATATTTTAACCATTC
>chr3D_1
TTGGTCCGATCCCTGGCTGAATAGAGAAGGAGTGTGAGTCCCAGGTACACCAAGAGGACGCTGCCTGTTGACCAAGGTTT
GCGAGCTAGTTGATCCAGGCACCCATAACTGGGATGAGGGGCTAGTGAGAGACATCTTCTCGGCAGAGGAAGCAAAAATT
ATTCTGGCTACACCAGTCCGAGAGGAGTATGGTGATTTCTATGCTTGGTTTCATGATAGCAAGGGCCAATTCTTAGTTAA
GTCAGCCTACAAACTGTATGTGCAGGGAAGAGATGCTGGAATATCGGAAACATCTGATCCACAGCCAGCTGATTGGGAGT
GGAAAGAGATATGGTCTCTGCCTTGTCAACCCAAGATCCAACAGTTTATGTGGCGTCTTGCCCACAATAGTCTCCCCC-T
GAAGCTGAACATAAAGCGAAGAGGCATCAACTGCGACACCCTATGTGTTTGCTGCAGAAGATTGGATGAAGATGGGGCAC
ACCTATTTCTGAAATGTAAGTAGGTGAGGAGAGTATGTCAATCTCTTCAGCTAGAGGCAGTGAGAGAAAGACTCTATGCA
AGCGACAACGCCAGTGATATGATGCATGCATTGCTCCGGTTGCCAGAGGATAAAAGAATACTTGTTGCATGCCTTCTATG
GAGATGGTGGCCCTGGAGGAACAAGATAAATGCTGGAGAAAGCATTGGAAGACTAGACAGCTTGCCTACAGAGATCAATC
ACTGGGCTATTGATTCACTAACTCAGTGCAGGCCTCGGCGTTCGGTGCAGCGGATACAGCCAATGCATGCTTGGATAAGA
CCTGTGGAGGATGTGTTAAAAAATAACTGTCATGGGGCCTTTTCAGAACGGCAGGGCACATGTGGCTGGGGTTTCGTTGT
CAGAGACCACCTGGGAGATGTTCGACGTTCTGGCATGGGATTCCTGCGCAATGTCGCTTCTGCAGTACAGGCGGAAGCGG
AAGCATGTGTTGCTGCTCTGGGGGCGGCGACAAACTGGGGAATGACAAACGTCCAAGTCGAGTTGGACCGCCAAGTTCTG
GTGAAAGCATTGCAAGGCACCGAGTCCGATTTAGCTGCCGAAGAAATCCTGTTTAGAGAAATCCCTGAGTTTGCCCGGAT
GAACTTCAATTGTATTTCTTTCTCTTTTGCCCCGAGGGCTTGTAATGCGTTAGCACACGAATTAGCGGCCTTTGGTGCTT
GTCGTCCT------------GTGAGCCGGGAACTATGGTCTGAGGACCTCCCGAATGATGTAATTGTTCATCGGGCCAGC
AGTATGGCTGTACCTGTGTGATGTATGGAATCCATGTGTTCCATCTAAATAAAAAAGGCC--------------------
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>chr3B_88
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-------AGTTGATCTAGACACCCATAACTGGGATGAGGGGCTAGTGAGAGACTTCTTCTCGACAGAGGAAGCAAAAATT
ATTCTGGCTACACTAGTTCAAGAGGAGTATGGTGATTTCTATGCTTGGTTTCATGATAGGAAGGGCCAGCTCTCGGTTAA
GTCAGCCTACAAATTGTACGTGCAGGGAAGAGATGCTGGAATACCGGAAACTTCTGATCCACAACCAGCTGATTGGGAGT
GGAAAGAGATATAGTCTCTGCCTTGTCATCCCATGTTCCAGCATTTTATGTGGCGTCTTGCCCACAATAGTCTCCCCCCT
GAAGTTGAACATAAAGCAAAGAGGAATCAACTACGACACCCTATGCGTTTGTTGCAGAAGATTGGATGACAATGGGGCAC
ATCTATTTCTGAAATGTAAGCAGGTGAGGAGAGTATGGCAATCTCTTCAGCTAGAGGCGGTGAGAGAAAGACTCTGTGCA
TGCAACAACGCTAGTGATATGATGCATGCATTGCTCCGGCTGCCGGAGGATAAAAGAATACTTGTTGCATGTCTGCTCTA
GAGATGGTGGCCCTGGAGGAACAAGATAAATGCTGGAGAAAGCGTTGGAAGACTAGACAGCTTGCCTGCAGATATCAATC
ACTGGGCTATTGATTCACTAACTCAATGCAGGCCTCAGCGTCCGATGCAGCGGATACAACCAATGCATGCTTGGAGAAGA
CCTGTGGAGGATGTGTTAAAAATTAACTGTGATGGGGCCTTTTGAGAATGGCAGGGCACAGGTGGCTGGGGTTTCGTTGT
CAGAGACCACCTGGGAGATGTTCGAGGTTCTGGCGTGGGATTCCTATGCAATGTCACTTCTCCAGTACA-GCGGAAGCAG
AAGCATGTGCTGCTGCTCTGGAGGTGGCGACAAACTGGGGAATGACAAACGTCCAAGTCGAGTTGGACTGCCAAGTTCTG
GTGAAAGCATTGCAAGGCACCAAGTCTGATTTAGCTGCCGAAGGAATCCTGTTTAGAGAAATCCATGAGTTTCCCCGGAT
GAACTTCAATTGTATTTCTTTCTCTTTTGCCCCGAGGGCTTGTAATGCATTAGCACATGAATTAGCAGCCTTTGG-----
-------T------------GTGAGCTGGGAACTATGGCCTGAGGACCTCCCGAATGATAAAATTGTTTGTCGGGCCAGC
ACTATGGCTATAGTTGTGTGA-----------------------------------------------------------
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>chr2D_551
CTATTGCT------------------------------------------------------------------------
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TGCAACAACGCCAGTGATATGATGCATGCATTGCTCCGGCTGCCGGAGGATAAACAAATACTTGTTGCATGCCTGCTCTG
GAGATGGTGGACCTGGAGGAACAAGATAAATGCTGGAGAAAGTGTTGAAAGACTAGACAGCTTGTCTGTAGAGATTAATT
ACTGGGCTATTGAATCACTAACTCTGTGCAGGCCCCAGCGTACGGTGCAGCGGCTACAGCCATCGCATGTTTGGAGAAGA
CCTGTGGAGGATGTGTTAAAAAACAACTGTGACGGGGCCTTTTCAGAACGGCAGGGCGCAGGTGGATGGGGTTTCGTTGT
CAGAGACCACCTGGGAGATGTTCGAGATTCAGGTTGGGGATCCCTGCGCAATGTCGCCTCTGTAGTACAGGCGGAAGCAG
AAGCATGTGCTGCCGCTCTTGAGGCGGCGACAAGCTGGGGAATGACAAACGTCCAAGTCGAGCTGGACTGCCAAGTTCTG
GTGAAAGCACTGCAAGGTACCGAGTCCGACTTAGCTGCCGAAGGAATCCTGTTTAGAGAAATCCCTGAGTTTGCCAGGAT
GAACTTCAATTGCATTTCTTTCTCTTTTGCCCCGAGGGCTTGTAATGCGTTAGCGCACGAGTTAGCAGCCTTTGG-----
-------TGCTTGTCGTCCTGTGAGCCGGAAACTATGGTCTGAGGACCTCCCGGATGATGTAACTATTCATCAGGCCAGC
ACTATGGCTGGACCTGTGTGATGTATGGAATCCATGTGTTCCATCTCAAAAAAAAA------------------------
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>chr2B_1302
TCTCAAGAAAAAAA------------------------------------------------------------------
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------------------------------------------------------------CCTGGGCTGTCATCCCATGC
CGGGGAGCAGTTAGCGAGCCAGCCGA-----------CGGAGCCGGAA-GCTGGCGTCGCGGATTTAGCGAAGCTGCCGA
-TTTTTGGGGTTTGCGAGAGC--AAAAAA-CTGGCTGTCA----CCCGTGCCTGTCCTCCACTGCCGTCTGCCGCCGGCC
CCCTCCCCCCTCCCCCCTTGCTTCGTCCGTCCTACTCCTGAACCTGTCGCCGCCGAATCCGGCATCGCGGAGGCCGCCCA
GCTTCATT-CCCCCCTCCTGCCACCGGAGCGACCCTCGAAGCGGCCGGCAGACCTCTGACGCCCGCC-------------
-------TCCCCTCCGCTGGACCGACACCCAGGCCGGGCGCGGCTTCCTCTCCTTGGGTAAGGAAGCCCTAGCTTTGCTC
TGCTTTGTTCGGGGTTACTGCCGTTACGTTTCTCTCCAGCCTACTTTTCTTCGCCGCGAATCAGTCGAATCCGACCAGAT
CCCTCTTCCTCGAGGCCTTTCCCGGCCGACCCCGGCCCC-----------C-----------CGTCAACCAGGACAGCGC
TAATCGCAGGATTAGCGGCGCCGCTAGCTTCGCATTCTGATTTGTACGCTACCTGCTAGTCTACGCCTTCAGATTTCACT
GTGCATAATTGTTCTAAGGGCACACAGAAGCTCAACCTCATGTAAATTGCATCATATCCAGTCACTCATGTAAACATAGA
AAGTAGTGAATTACATTCAAGAACTGTCAGGCCGGCA-------TGCCCAGGTTGCTATTAATGTTTTTCAACCATATTT
CAATTGCTCTTGAAAATACATCGCAGAAATGGCAA-----AC-----AGTCACAACCACATAAGTCTACACTATATTTTC
ACCATT-TCTCCCCAACTCAATCTGGAATGTATTATACAATATTAGAGTTAACAGATCGCACATATGTTTTCACCATT-
>chr2A_1310
A------AAAAAAC------------------------------------------------------------------
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------------------------------------------------------------CCTGGGCTGCCAGCCCATGC
CGGGGATGAGTTAGCGAGCCAGCCGA-----------CGGAGCCGGAAAGCTGGCGCCGCGGATTTAGCGAAGC------
------GGGTTTTGCGAGAGCAAAAAAAA-CTGGCTGTCA----CCCGTGCCTGTCCTCCGCTGCCGTCTGCCGCCGGCC
CCCTCCCCCT--CCCCCTTGCTTCGTCCGTCCTACTCCTGAACCTGTCGCCGCCGAATCCGGCGTCGCCT---------A
GCTTCATT-CCCCCCTCCTGCCACCGGAGCGACCCTCGAAGCGGCCGGCGA-----------------------------
---------CCCTCCGCCGCACCGACACCCAGGCCGGCAA-GGCTTCTTCTCCTTGGGTAAGCAAGCCCTAGCTTTGCTC
TGCTTTGTTC-GGGTTACTGCCGTTACGTTTCTCTTTACCCTACTTTTCTCT-CCGCGAATCAATCGAATCCGGCCAGAT
CCCTCTTCCTCGAGGCCTTTCCCGGCCTACCCCGGCCCC-----------CGTTCCTAGGGCCGTCAATTGGGACAGCGC
TGGTCGCAGGATTACCACCGCCGCTAGCTTCGCATTCTGATTTGTACGCTAGCTGCTATTCA---CCTTCAGATTTCACC
ATGAATAATTATTCGAAGGGTACACAGAAGCTCAACCTCGTGTAAATTGTATCATATCCAGTCACTCGTATGAACATAGA
AAATAGTGAATTACATTCTAGAACTAGTAGGCATCGGTGTGACGTGCCCAGGTTGCCATTGATATTTTTCAACCATATTT
CGATTGCTCTTGAAAATACATGGCAGAAATGGCAAGCCAAAA-----AGTCACAGTCACATAAATCTACAGCATATTTTC
ACCATT-TCTCCCCAACTCAATCTGGAATGTAT--TACAATATTTTAGTTCACAGGTCACACATCTATTTTCAACATT-
>SNPs
----------------------------------S---------------------------------------------
----S------------------------S--------S-----------------------------------------
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----S----------------------------------------------S-------------S--------------
-------------S------------------------------------------------------------------
---------S----------------------------------------------------------------------
-------------------------------------------------------------------------S------
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-S-----------------------------------S------------------------------------------
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---------S-------------------------S--------------------------------------S-----
------------------------------------------------------------------S-------------
------------------------------------------------S---------------S-------------S-
-----------------------------------------------S-----------------S-------------S
-----------------------------------------------------------------------------S--
-----------------------------S--------------------------S-SS-------S------------
----SS-SSS-S--------------SSSSSSSSSSS-------------------------------------------
S----S-----------------------S----------SSSS------------------------------------
------------------------------------------------------S-------------------------
--------S-------------S-----------------------------S---S-S-----S--SSSSSSSSSSSSS
SSSSSSS-------------S-------S---------------------------------------------------
---------------S---------------------S-------------------------------S----------
-----------------------S---------------SSSSSSSSSSS--------------------------S---
------------------------------------------------------------S-------------------
--------S------------S----------------------------------------------------------
--------------------S------------------S--------S-------------------------------
------------------------------------------SSSSS--------------------------S---S--
------S-------------S--------SS---------------S------------------------S------S
>forward_410
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----------------------------------------------------------------------GTCTCCCCCT
GAAGCTGAAT----------------------------------------------------------------------
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>reverse_1885
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--------------------------------------------CTAGGGCCGTCAATCAGGAC----------------
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