>input_sequence_85974
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------------------------------------------------------------ATGGCTTTGGATTGCAGGGC
CTTGCCGCAGCCGGCGACCGCCTGCGTCGCCGCCGTCGAGGCGGCGAGGCCGTGGTTGGGGGCCTGCGGTGCTAAGTCGT
CTACGGATGGAAAGGA------CAAACTGCAGGGGAGCGCCGTTGAGG------TGGATGTGCCGCTGTTGTGGGACGAC
GAGGGGAGGATGAAGCGGGAGCTGGTCGCCTGGGCCAAGGCCGTGGCATCCATGGCCATCAGGGAATCGATGCGGTGCTA
A-------------------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G317200
GATAAAAAAAGGTAGGTTTATGTTATGACAGAGTTTTTCTGTTTCGCAGTAGAATCGTGCATGCTTACTAGTAGTATAGA
AATAATGAAACAAAAGGCGGCGGATCCGGGTGCTGAAAGTTGCCGAGTTTCCCCTTTTCTTTAGTTGCCGAGTTTCCTAA
CAGTGTGCGGATACGTGGGAAACCATTGTCCTCACGTTGTCGGTACCACGATCAGCATCGACCGAAACACCTACTCCCTT
ATTTCATCTATATAGGGCCTAATGCGTTTTCTAAAACCGTCTTTGACTATTGATAAGATTAATAGTACATGAGATATATA
ATGTGAAAATTATATCATTGAAAACTCCTTTCACATACTAATTTGACAGTATGTTTTGTGTAAGTTGCATGTCATATGCT
ATTGCTTTAATATTTGATCAAAATTAGCCTCAAAAAACACATCAGGCCCTATAAATGGAAGGAGGGAGTACCTCACTGCA
CACCGCGCTTGCTCCCGTCGATCGGGACGCGTAGTTCGGTGATGACAATGATCCATCATAGACACGCGCAAGTGAACCAC
AATTTAAAAACACAGGCCGGTGTGATCCCGCGTGACCAACGATGTTCCAGT-CCAACTACCCCGGCCGCCCGGCCAGTCA
CGAACATCATCGCACCTAGCACCTGAATGCACATGTCATAATCGACCCCGTCCTTCCGTCTAACCAACCAACCAACAGCT
TAATTTCAGCGTATGTTTCCCGGACACCTGTGGATCGAGGCAGTGCAGTGTCAACGTTGTGC---CAGTCGTCACGCACT
GGCGCGTACACGTACGAGACCCGTCGCCCATACTGGCTACTCGTGCGTCCCACGTCCGCGGCCCGCGTACGCGCCGCTGG
CCGGCCGGTGTATATATGGAGCGC----------------CCTCAACTCGACAGCAGCACCAGTCGAGCCCCAGCAAGCA
GATTCGACAACAAAATTCTTCTGCAGCAAGGGCTTCCAAGTCCAAACCGATCATCAGCTCATGGCTTTGGATTGCAGGGC
CTTGCCGCAGCCGGCGACCGCCTGCGTCGCCGCCGTCGAGGCGGCGAGGCCGTGGTTGGGGGCCTGCGGTGCTAAGTCGT
CTACGGATGGAAAGGA------CAAACTGCAGGGGAGCGCCGTTGAGG------TGGATGTGCCGCTGTTGTGGGACGAC
GAGGGGAGGATGAAGCGGGAGCTGGTCGCCTGGGCCAAGGCCGTGGCATCCATGGCCATCAGGGAATCGATGCGGTGCTA
AGGAGTACACGCGCAGCGCGAGGCGATGGAGGAGTCATGGGTCGATGCATTTCTTGTTTGCTTCGTGCACGCAGCTACAC
ACCCGCGGCACCGAGCGTGGCCGGTGGCCGCTGGCCTGCATTTCGTTTCCTCTGAATCCCTTTTTCACGGAGCGATCGGT
CATAGTACATCGATCATTCGGGATGTAAATGTTTCTGGAAAGGATGGAGGACTAATCCATAATACCTAAATAGTTGAACC
-CATTACTTTTAATTCTCTCAACATGCAAGCCATTCACCTCATCAAGTGTGCCACATCAGCATCCACTAACAATATTTTT
CAGCCCATGCAAACCTTATTCCGTTATCACTAA-TTCTCTCAACATGCAAGCATTCTACCTCACAATACACTACAATATT
TTTCAGCCCATGCAAACCATACCAATATGTTTATTTTTGTCACTGGACATATGTACTAGAATAGATAATTATTTAATTTA
TTTACTTCCTAAAGATTGTGAAATGCCCTAATTTACACAAAATGCAAGTACGGAATAGTTATATGTTAAAATTAGTAACT
TTTGATTTAGATCTGTTCCTTCATACTAGTCAATGTGTACATGCAATGCACGTTAATTTGAAAGTATGTTAAATGCATGC
GGATATTAAGTAAGATATTATTTGCGTGTTATTATGTGATTAGCACTATATTTGACATGAAATTAACTGCACGCTAAACG
TGTTGA---CTCGACATTGAAGCAGTCTAAGTCGTTGGATTGACATGATTTGATGGCCGAGATTAATTGGATCTG-CCCT
TTAGGTCTTTTTATATTGGTATAGATATAA------GTTATCTGTAATTAATCTTTACATTCCCGCAACAACGCGCGGGA
AAATTACCAAGTTATACTAGTATTAGATGTTTTCCATGATCTCTACCATATTCCATTGTGTCCGAGGAAGATGAAGGATC
ACATCTGTCATGCGCTAAGCAACAGTTCTTCAAAAGAATTGGAGCCCCAGCGT
>chr2D_541
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------------------------------------------------------------GACACGTGCAACTGAACCAT
AATTTAAAACC-CAGGCCGGTGTGATCCCGCGTGACCGACGATGTCCCAGTTCCAACCACCCCGGCCGCCCGACCAGTCA
GGAACACGATCGCAGCTAGCACCTGAATGCACAT----------ACCCCGTC---CCGTCGAACCAACCAACCAACCGCT
TAATTTCAGCGTGTGTTTCCCGGACACCTGTGCAGGCAGGGCA---AGTGTCAACGTTGTGTCGTCAGTCGTCAGGCACT
GGCGCGTACACGTGTGAGGCCCATCGCCCATAT--GCTACTTGTGCGTCCCACGTCCGCGGCCCGCGCACGCGCCGCTGG
CC-GCCGGTGTATATATAGAGCGC-------GCAGTGTGCCCTCGACTCCCCAGCAGCACCAACCGAGACATCGATCCGG
CCA---ACAGCAGAATTCCTCTGCAACGACGACTTCGAAACCCGAACTCATCATCCA-TCATGGCTTTGGATCGCAGGGC
CTTGCCGCAGCCGGCGGCCGCCTGCGTTCCCGCCGTCCAGGCGGCGAGGCCGTGGGCGGGGGACAGCGGTACTAATTCGT
CTACGGAGGGGAGGGAAAGGGACATACTGCAGGGGAGCGCCGTGGAGG------TGGATGTGCCGCTGCTGTGGGACGAC
GAGGGGAGGATGAAGCGGGAGCTGGTCGCCTGGGCCAAGGCCGTGGCGTCCATGGCCATCAGGGAGTCGATGCGGTGCTA
AGGTGCACGCGCGCGGCAGAGGCAATG-----------------------------------------------------
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>chr2B_541
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------------------------------------------------------------GACACGTGCAAGTGAACCAC
AATTTAAAACC-CAGGCCGGTGTGATCCCGCGTGACCAACGATGTCCCAGTTCCAACCACCCCGGCCGCCCGACCAGTCA
GGAACACGATCGCACCGAACACCTGAATGCACATATCATAATCGACCCCGTC---CCGTCGAACCAACCAACCAACCGCT
TAATTTCAGCGTGTGTTTCCCGGACACCTGTGCAAGCAGTGC-------------GTTGTGTCGTCAGTCGTCAGGCACT
GGCGCGTACACGTGTGAGGCCGATCGCCCATAT--GCTACTCGTGCGTCCCACGTCCGCGGCC-GCGCACGCGCCGCTGG
CCGGCCGGTGTATATATAGAGCGC-------GC-------GCTCACCTCCCCAGCAGCACCAACCGAGACATCCATCCGG
CCA---ACAGCAGAATTCCTCTGCAAGGACGACTTCGAAATCCGAACTCATCATCCG-TCATGGCTTTGGATGGCAGGGC
CTTGCCGCAGCCGGCGCCCGCGTGCGTTCCCGCCGTCCAGGCGGTGAGGCCGTGGGCGGGGGACAGCGGTGCTAATTCGT
CTACGGAGGGAAGGGAAAGGGGCATGCTGCAGGGGAGCGCCGTGGAGG------TGGATGTGCCGCTGCTGCGGGACGAC
GAGGGGAGGATGAAGCGGGAGCTGGTCGCCTGGGCCAAGGCCGTGGCGTCCATGGCCATCAGGGAGTCGATGCGGTGCTA
AGGTGCACGCGCGCGGCAGAGGCAATG-----------------------------------------------------
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>chr2A_541
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------------------------------------------------------------GACACGTGCAAGTG-ACCAT
AATTTAAAACC-TAGGCCGGTGTGATCCCGCGTGACTAACGATGTCCCAGTTCCAACTACCCCGGCCGCCCGACCAGTCA
GGAACACGATCGCGTCTAGCACCTGAATGCACAT----------ACCCCGTC---CCGTCGAACCAACCAACCAACCGGT
TAATTTCAGCGTGTGTTTCCCGGACACCTGTGCAGGCAGGGCA---AGTATCAACGTTGTGTTGTCAGTCGTCAGGCACT
GGCGCGTACACGTGTGAGGCCGATCGCCCATAT--GCTACTCGTGCGTCCCACGTCCGCGGCCCGCGCACGCGCCGCTGG
CCGGCCGGTGTATATATAGAGCGCGCAGTGTGC-------CCTCAACTCCCCAGCAGCACCAACCGAGACATCAATCCGG
CCA---ACAGCAGAATTCCTCTGCAACGACGGCCTCGAAATCCGAACTCATCATCCA-TCATGGCTTTGGATGGCAGGGC
CTTGCCTCAGCCGGCGGCTGCCTGCGTTCCCGCCGTCCAGGCGGCGAGGCCGTGGGCGGGGGACAGCGGTGCTAATTCGT
CTACGGAGGGGAGGGAAAGGGGCATACTGCAGAGGAGCGCCGTGGAGGTGGAGGTGGATGTGCGGCTGCTGTGGGACGAC
GAGGGGAGGATGAAGCGGGAGCTGGTCGCCTGGGCCAAGGCCGTGGCGTCCATGGCCATCAGGGAGTCGATGCGGTGCTA
AGGTGCACGCGCGCAGC---------------------------------------------------------------
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>chr7A_1461
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----------------------------------------------------TAATCTATAATACCTAAATAGTTGATCC
TCACTATTTCTAATTCTATCAACATACAAGCCCTCCACCTCATCAAGTGTGCGACATCAGCATCCACTAACAATATTTTT
CAGCCTATGCAAACCTTATTTCATTATCACTAAATTCTCTCAACATGCAAGCATCCCACTTCACCGTACAATATTTTTA-
TTTCAGCCCATGCAAACCATACCAATATGCTTATTTTCGTCACTGAACATATGTAGTATATTAGATAATTATTTAATTTA
TGTACTTCCTAAAGGTTGTGAAATGCCCTGATTTACACATAATGCAAGTACGGAATATTTATATGTTAAAATTAGTAGCT
TTTGATTTAGATCTTTTATTGCATACTAGTCAATGCGTACATGCAATGCACGTTAATTTGGAAGTATATTAAGTGCATGC
AGATATTAAATATGATACTATTTACGTGTCATTATGTGATTAACACTATTTTTGGCATGAAATTAACTACACGCTAAACG
CGTTGAGCGCTTGATATTGAAGCAGTCTACGTCGTTAGATTGACATGACTTAATGGCCGAGATTAATTGGATATGTCCCT
TTGAGTCTTTTTATATTGGTACAGATATAAATATAAGTCATTTGTAATTAATTTTTATATTCCCACAGCAACGCGCGGGT
AAATTACCTAGTT-------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-------------
---------S-S---------------------------------S--------------------------S-------
S-----SS--------------------------S-----------------SSS-----S---------------S---
------------S-------------------S-SSS---SSSSSS---------------S------------S-----
-------------SS---S---S---------SSS--------------------------------S------------
-----------------S-------------------------------SS-----------SS----S-SSS-SSSSSS
SSSSSS---S--S-----S------S-S-S------S--S---S---SS------S-S--------------S-------
----------------S----------SS--------S-----------------SS-----S-S----------S----
-------S----S-----------S------------------S------------------------S-----------
-----------------------------------------------S-----------------S--------------
---S-S--S--------SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-------------------S--
---S--S--S-------S-------S------S-S-----------------S---------------------------
-----S--------------S-S-------------------------------S-S--S----SS----S--SSS-SSS
-----------------------------S-------S-------S---------S--S-S-------------------
-S------------S--------------S---------S-----------------S-------------------S--
--------------S--SS-S--------------S------------------------S------S----S-------
S--------S--S----S-----S-----S------------S------S----S-------------S-----------
S----------S--S--------------S------S-----------S--S--------------------S-------
--SS-----------------S----------------S--S----------S----S------S--S-----------S
--------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_483
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---------------------------------------------------------------GGGAGTACCTCACTGCA
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>reverse_1391
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------------------------------CTGGCCTGCATTTCGTTTCC------------------------------
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